genome.fa.s1702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001702.1 Hibiscus syriacus cultivar Beakdansim tig00003411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113141

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178--202	12	2.1	12	100	0	50	64	0	8	28	1.22
178--217	14	3.0	13	86	13	55	65	0	7	27	1.20
14052--14118	34	1.9	34	82	14	84	50	19	8	20	1.74
15200--15337	60	2.3	60	85	0	177	42	12	8	36	1.73
15200--15357	60	2.6	59	81	3	172	43	13	9	34	1.76
22891--22960	29	2.4	29	83	4	88	28	0	2	68	1.04
22915--22988	28	2.5	29	84	6	87	22	1	6	68	1.20
22983--23034	26	2.0	26	88	0	77	32	0	5	61	1.20
23052--23130	29	2.7	29	76	7	79	26	11	7	54	1.63
30794--30880	42	2.1	42	80	4	95	33	22	9	34	1.86
30812--30894	42	2.0	41	83	2	103	38	18	6	37	1.75
35324--35382	24	2.4	23	81	10	64	52	3	0	44	1.17
36307--36399	21	4.6	20	78	4	96	40	18	23	17	1.90
36307--36399	41	2.3	41	98	0	177	40	18	23	17	1.90
36385--36522	41	3.4	41	75	13	133	34	23	17	25	1.96
36430--36502	20	3.7	20	92	0	119	26	28	19	26	1.98
36690--36733	22	2.0	22	95	0	79	20	45	15	18	1.85
36977--37040	20	3.2	20	84	4	76	14	18	23	43	1.86
38362--38406	18	2.5	18	85	0	63	28	42	15	13	1.85
38887--38932	20	2.3	20	88	0	65	36	26	21	15	1.93
38927--38995	32	2.1	33	94	2	122	39	21	18	20	1.93
40873--40908	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41025--41092	19	3.8	19	85	14	101	47	17	22	13	1.82
41111--41168	20	2.9	20	89	0	89	17	24	20	37	1.93
42225--42278	24	2.2	24	90	0	81	24	16	20	38	1.92
42453--42477	12	2.1	12	100	0	50	72	0	28	0	0.86
44764--44894	19	7.7	19	66	23	94	42	19	22	14	1.88
44764--44890	33	3.8	33	88	4	202	42	19	22	14	1.88
44765--44897	66	2.0	66	97	0	248	41	19	22	16	1.90
44890--44928	20	2.0	20	85	5	53	15	17	20	46	1.84
45073--45109	14	2.6	14	91	0	65	45	24	0	29	1.53
46506--46585	42	1.9	42	84	0	106	23	17	37	21	1.94
48593--48651	20	3.0	19	78	9	64	44	18	23	13	1.86
48618--48711	47	2.0	48	87	2	136	39	25	23	11	1.88
48702--48810	19	5.7	19	91	2	173	47	21	19	11	1.81
48806--48850	19	2.4	19	88	0	72	6	15	24	53	1.66
49403--49455	20	2.7	20	90	0	79	26	18	28	26	1.98
49464--49517	20	2.7	20	97	0	99	25	18	24	31	1.97
49404--49538	61	2.2	61	80	2	146	22	19	24	33	1.97
49588--49628	21	2.0	21	85	0	55	34	31	17	17	1.93
53655--53689	15	2.3	15	90	9	54	31	5	2	60	1.35
54025--54252	21	11.0	21	74	13	129	22	19	21	35	1.96
54029--54252	42	5.4	42	78	9	217	23	19	21	35	1.96
54043--54224	63	2.9	61	88	4	265	21	18	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54338--54374	6	6.5	6	96	3	60	29	54	16	0	1.43
55440--55500	23	2.7	23	86	0	86	26	26	26	21	1.99
55516--55836	103	3.1	103	98	0	606	36	23	13	25	1.92
57016--57059	21	2.1	21	91	0	70	15	25	27	31	1.96
60793--60844	23	2.3	23	82	0	59	28	26	23	21	1.99
60801--60851	23	2.2	23	92	0	84	25	25	27	21	1.99
60869--61086	103	2.1	103	94	0	382	36	23	14	25	1.93
62263--62306	21	2.1	21	91	0	70	15	25	27	31	1.96
66052--66104	23	2.3	23	83	0	79	26	24	26	22	2.00
66120--66337	103	2.1	103	94	0	382	36	23	13	25	1.92
68379--68416	6	6.5	6	93	3	60	2	15	50	31	1.58
68505--68603	21	4.8	19	69	16	63	35	20	19	25	1.95
68509--68603	42	2.3	42	92	0	154	36	21	18	23	1.95
68517--68579	21	3.0	21	69	17	67	38	20	19	22	1.94
68520--68594	23	3.5	22	71	14	66	36	18	21	24	1.95
68647--68694	21	2.3	21	96	0	87	29	31	18	20	1.97
68726--68779	21	2.6	21	87	0	72	22	20	25	31	1.98
73287--73317	16	1.9	16	100	0	62	58	22	12	6	1.58
73387--73464	16	4.9	16	90	0	111	50	24	17	7	1.73
73696--73724	11	2.6	11	100	0	58	27	27	20	24	1.99
76247--76294	2	24.0	2	95	0	87	47	0	0	52	1.00
76800--76844	23	2.0	23	90	0	72	17	26	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77750--77805	14	4.3	14	71	17	57	51	21	14	12	1.74
77743--77804	24	2.6	24	84	0	88	53	20	12	12	1.72
79308--79340	5	6.6	5	92	0	57	21	3	0	75	0.93
82239--82312	36	2.0	38	92	5	125	45	10	10	32	1.74
85053--85155	45	2.3	45	85	8	129	30	18	20	31	1.96
93721--93756	18	2.1	18	89	5	56	25	19	22	33	1.97
93716--93826	45	2.4	45	85	8	136	30	18	18	31	1.96
93767--93892	65	2.0	64	85	4	173	26	17	22	33	1.96
95220--95264	23	2.0	23	82	8	56	53	13	13	20	1.72
96817--96885	33	2.1	33	88	0	102	49	18	24	7	1.73
96994--97057	23	2.7	23	90	2	92	31	20	9	39	1.84
98487--98529	20	2.1	20	82	4	50	34	18	13	32	1.90
100823--100875	26	2.0	26	96	0	97	30	11	22	35	1.89
101456--101511	26	2.2	25	93	3	94	42	0	50	7	1.30
101931--101968	14	2.9	14	88	7	53	28	0	26	44	1.54
103542--103584	22	2.0	22	95	0	77	48	2	0	48	1.14
103525--103611	30	3.0	28	82	11	104	51	1	0	47	1.08
103567--103623	22	2.7	21	76	15	55	57	0	0	42	0.98
104481--104630	60	2.5	59	79	4	156	38	21	4	36	1.72

Tables:   1

The End!