genome.fa.s1703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001703.1 Hibiscus syriacus cultivar Beakdansim tig00003413_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104302

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1308--1403	32	3.0	32	78	7	106	46	0	5	47	1.24
2141--2176	8	4.5	8	100	0	72	11	11	0	77	0.99
2995--3190	9	21.2	9	69	19	63	71	2	4	21	1.16
2995--3108	5	24.2	5	68	16	57	77	2	6	14	1.07
2994--3097	27	3.7	27	75	13	84	76	2	6	13	1.09
3000--3102	29	3.6	28	77	13	86	76	2	6	13	1.10
2995--3106	19	5.9	19	73	13	79	77	2	6	13	1.06
2994--3104	14	7.6	15	66	14	63	77	2	6	13	1.07
2995--3108	18	6.1	18	71	17	79	77	2	6	14	1.07
3121--3193	3	24.7	3	79	18	82	67	1	0	31	1.00
3111--3194	23	4.2	19	76	19	59	65	2	1	30	1.13
3277--3376	38	2.7	33	77	15	83	72	1	4	23	1.08
3316--3355	21	1.9	21	100	0	80	67	0	2	30	1.04
3310--3424	30	3.8	30	73	16	87	66	0	4	28	1.17
3822--3863	20	2.1	20	86	8	59	38	16	7	38	1.76
5328--5593	85	3.1	86	84	5	344	27	16	20	35	1.94
5964--6266	109	2.8	109	91	1	473	26	14	23	35	1.93
6242--6468	64	3.5	64	90	2	350	29	13	20	36	1.91
7419--7564	76	1.9	76	91	0	238	31	17	19	31	1.95
9786--9810	10	2.5	10	100	0	50	36	0	0	64	0.94
16105--16162	23	2.5	23	91	0	89	25	25	27	20	1.99
16181--16501	103	3.1	102	96	1	579	36	23	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21496--21553	23	2.5	23	91	0	89	25	25	27	20	1.99
21572--21892	103	3.1	103	97	0	597	36	23	13	26	1.91
25690--25754	3	21.0	3	78	12	69	35	0	4	60	1.18
25700--25751	20	2.5	20	93	3	86	32	0	5	61	1.20
28269--28426	21	7.8	20	72	7	86	38	25	17	18	1.92
28393--28586	20	9.6	20	81	5	221	35	25	19	19	1.95
28393--28586	60	3.2	60	83	0	253	35	25	19	19	1.95
28967--29037	33	2.2	33	89	0	106	11	23	16	47	1.79
29117--29221	19	5.6	20	68	18	82	44	19	25	10	1.82
29116--29192	40	1.9	41	91	2	129	44	16	27	11	1.83
29118--29191	21	3.6	21	75	14	82	45	17	27	9	1.79
29179--29232	14	3.5	14	73	22	54	42	24	25	7	1.80
29168--29237	33	2.1	33	97	0	131	47	20	25	7	1.75
29174--29248	33	2.3	33	92	0	123	46	24	22	6	1.75
29244--29341	19	5.7	19	70	22	81	10	24	22	42	1.84
29266--29355	14	5.7	14	74	23	81	8	25	23	42	1.83
29249--29363	33	3.5	33	95	0	212	9	24	20	45	1.81
31062--31525	92	5.0	92	98	1	892	21	12	19	46	1.83
31058--31525	185	2.5	185	99	0	918	22	12	19	45	1.83
31058--31529	93	5.1	93	98	1	912	22	12	19	46	1.83
31573--31701	19	7.3	19	75	17	125	45	28	17	8	1.77
31609--31701	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31573--31701	52	2.5	52	74	14	140	45	28	17	8	1.77
31697--31831	19	7.6	19	73	16	119	11	18	23	46	1.81
31719--31775	14	3.7	14	77	20	60	10	21	22	45	1.82
31702--31794	33	2.8	33	93	0	159	10	19	21	48	1.79
33753--33788	14	2.6	14	95	0	63	33	0	22	44	1.53
33895--33992	19	5.4	19	84	13	143	45	17	22	14	1.84
33895--34011	53	2.2	53	98	1	227	44	17	23	13	1.85
36329--36353	12	2.1	12	100	0	50	0	28	0	72	0.86
36528--36574	24	2.0	24	87	8	69	38	21	14	25	1.92
37257--37506	20	12.5	20	87	1	268	19	18	24	37	1.94
37493--37575	21	4.0	21	73	6	78	25	16	24	33	1.96
37473--37571	42	2.4	43	77	11	100	21	18	23	37	1.94
57232--57291	23	2.6	23	81	0	75	33	25	20	21	1.97
60550--60748	104	1.9	104	89	2	312	24	16	29	30	1.96
63712--63808	24	4.1	24	82	2	115	27	23	23	24	2.00
63712--63808	47	2.0	48	86	2	133	27	23	23	24	2.00
65972--66025	22	2.6	21	76	5	56	24	20	22	33	1.97
66416--66913	133	3.8	131	81	5	540	31	21	16	30	1.95
66416--66913	266	1.9	262	82	3	633	31	21	16	30	1.95
67203--67243	13	3.2	13	80	19	59	36	34	21	7	1.82
67205--67249	12	3.7	12	79	5	54	40	31	20	8	1.83
67705--67784	33	2.4	32	82	10	90	60	6	20	13	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67770--67813	18	2.4	18	88	0	70	86	0	9	4	0.70
67769--67813	9	5.0	9	80	0	54	84	0	11	4	0.76
68952--68996	2	24.0	2	82	13	60	51	0	0	48	1.00
70254--70280	13	2.1	13	100	0	54	37	0	14	48	1.45
75377--75567	90	2.1	90	94	0	328	38	17	11	31	1.86
76496--76547	19	2.7	20	72	6	52	26	30	17	25	1.97
81773--81832	20	2.9	21	90	7	95	30	25	26	18	1.98
81866--81910	23	2.0	22	82	4	54	31	26	26	15	1.96
83204--83413	103	2.0	103	94	0	366	26	12	24	36	1.92
83433--83484	23	2.3	23	89	0	77	19	28	26	25	1.98
85526--85623	23	4.5	23	79	11	100	25	27	18	28	1.98
87897--87935	19	2.1	19	95	0	69	35	5	7	51	1.53
88306--88367	22	3.0	21	75	13	65	29	32	17	20	1.96
89571--89600	12	2.5	12	94	0	51	30	56	0	13	1.37
90873--90915	23	2.0	21	86	9	59	13	0	23	62	1.31
91301--91327	13	2.1	13	100	0	54	37	0	14	48	1.45
91521--91598	21	3.6	21	71	21	70	30	26	19	23	1.98
91498--91602	45	2.3	45	95	0	183	28	28	17	25	1.97
91498--91577	24	3.5	24	69	22	80	27	27	17	27	1.98
92458--92609	69	2.2	69	92	1	250	29	3	9	57	1.46
94745--94990	30	8.3	29	72	9	151	56	8	15	19	1.64
96442--96483	3	14.0	3	89	0	57	66	7	0	26	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96442--96483	12	3.5	12	90	0	66	66	7	0	26	1.17
99863--99908	23	2.0	23	87	8	67	34	26	21	17	1.95
101727--102181	226	2.0	228	94	1	808	41	12	9	37	1.74

Tables:   1

The End!