genome.fa.s1704.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001704.1 Hibiscus syriacus cultivar Beakdansim tig00003418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79354

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3863--3892	15	2.0	15	93	0	51	50	13	10	26	1.73
6172--6213	15	2.6	16	81	7	50	73	0	11	14	1.09
8485--8809	6	56.3	6	87	12	486	32	0	17	49	1.47
10480--10539	29	2.0	30	84	9	79	28	13	8	50	1.70
10667--10699	7	4.9	7	96	3	59	15	27	12	45	1.81
10793--10847	17	3.3	17	69	5	58	36	5	12	45	1.66
10865--10909	17	2.6	17	79	6	56	28	0	17	53	1.44
10939--10982	15	2.7	17	79	13	56	29	9	20	40	1.83
11622--11763	15	9.5	15	66	9	83	43	20	18	17	1.88
11622--11752	30	4.4	31	85	6	153	44	20	18	16	1.87
11589--11687	45	2.2	45	81	0	117	44	16	18	21	1.87
11589--11768	75	2.4	75	77	4	184	44	19	17	18	1.87
13663--13745	26	3.2	25	86	6	87	26	12	12	49	1.75
13663--13752	13	6.9	13	70	9	58	26	11	12	50	1.73
14483--14565	16	5.3	15	65	13	51	16	4	15	62	1.49
14508--14564	16	3.6	15	75	15	53	19	5	15	59	1.55
14488--14564	32	2.5	31	82	2	91	18	5	16	59	1.55
16059--16133	18	3.9	18	80	13	96	20	21	30	28	1.98
16054--16133	40	2.0	40	95	0	142	21	21	28	28	1.98
16711--16756	22	2.1	22	91	0	74	17	23	34	23	1.96
16800--16843	22	2.0	22	90	0	70	20	15	15	47	1.82
20160--20258	50	2.0	50	95	0	180	42	7	20	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21151--21196	20	2.2	20	88	3	65	39	10	15	34	1.82
22420--22465	24	1.9	24	90	0	74	32	13	15	39	1.85
23235--23279	22	2.0	22	91	0	72	22	20	20	37	1.94
23239--23286	22	2.2	22	84	0	60	22	22	16	37	1.94
23939--23972	18	1.9	17	88	5	50	23	8	11	55	1.63
27659--27684	11	2.4	11	100	0	52	15	0	0	84	0.62
27658--27697	18	2.3	17	86	4	53	12	5	0	82	0.82
38046--38102	2	28.5	2	100	0	114	49	0	0	50	1.00
38773--38955	42	4.4	42	77	4	192	28	18	19	33	1.95
38774--38979	41	5.0	42	78	7	161	28	18	19	33	1.96
47054--47186	54	2.4	54	91	2	212	34	17	17	30	1.93
56038--56088	20	2.5	21	83	3	59	27	1	7	62	1.33
57859--58292	229	1.9	228	95	0	778	38	8	12	40	1.74
63567--63624	3	19.7	3	92	3	100	32	1	0	65	1.03
65123--65312	30	6.5	30	73	10	126	19	12	8	59	1.58
65130--65326	29	6.8	29	73	10	125	20	13	8	56	1.63
66301--66344	22	2.1	20	91	8	70	47	11	22	18	1.80
67423--67569	69	2.1	68	96	2	267	58	8	2	30	1.41
68313--68386	21	3.4	21	64	10	58	24	17	29	28	1.97
68314--68410	45	2.2	45	100	0	194	27	15	25	30	1.96
68335--68414	24	3.5	24	66	10	76	31	13	22	32	1.93
68477--68554	21	3.6	21	75	21	88	21	19	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68498--68577	24	3.5	24	71	22	80	26	16	28	28	1.97
68473--68577	45	2.3	45	96	0	192	24	16	30	28	1.96
68749--68775	13	2.1	13	100	0	54	48	14	0	37	1.45
71717--71776	20	2.9	21	78	12	70	21	16	35	26	1.95
74449--74507	20	2.7	22	82	12	77	25	20	32	22	1.98
74499--74549	21	2.3	21	80	6	57	29	17	25	27	1.98

Tables:   1

The End!