Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001705.1 Hibiscus syriacus cultivar Beakdansim tig00003420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31129

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
329--477
75
2.0
76
89
4
230
30
20
16
32
1.95
1424--1635
63
3.4
64
84
3
279
36
20
11
31
1.89
1424--1647
64
3.6
63
82
6
242
36
20
12
30
1.90
1623--1922
109
2.8
109
88
3
437
35
23
14
27
1.93
2285--2527
84
2.9
84
85
4
319
34
21
17
26
1.95
4512--4784
21
13.2
21
66
22
93
23
4
3
68
1.22
4690--4735
3
15.7
3
82
13
60
30
0
2
67
1.03
4748--4860
5
24.2
5
72
13
64
14
6
2
76
1.08
4721--4790
24
2.8
24
77
14
61
22
2
2
71
1.13
4748--4810
29
2.2
28
91
2
99
15
3
1
79
0.94
4760--4822
14
4.5
13
78
20
56
12
7
1
77
1.05
4751--4861
32
3.6
30
77
16
86
13
6
2
77
1.07
4519--4860
9
37.8
9
66
18
76
20
5
3
70
1.22
4814--4869
27
2.1
27
86
0
76
12
8
5
73
1.24
5686--5730
8
5.5
8
94
2
72
80
0
11
8
0.92
5695--5741
16
3.1
15
87
9
60
78
0
12
8
0.95
6494--6596
32
3.2
31
82
6
118
48
3
0
46
1.27
8885--8932
25
1.9
25
91
0
78
50
8
18
22
1.74
14232--14271
2
20.0
2
100
0
80
50
0
0
50
1.00
15483--15536
20
2.7
20
94
0
90
51
18
18
11
1.74
15571--15801
20
11.4
20
88
2
300
35
17
25
20
1.94
15790--15833
20
2.2
20
91
0
70
54
15
18
11
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15467--15821
60
5.8
60
76
5
228
39
18
23
19
1.92
16453--16527
6
12.5
6
100
0
150
0
16
50
33
1.45
16601--16898
20
14.6
20
76
7
179
19
23
19
38
1.93
16603--16794
40
4.7
40
85
5
258
21
25
17
35
1.95
16611--16794
83
2.2
83
94
0
314
21
26
16
35
1.95
16848--16898
19
2.6
20
90
3
77
15
17
23
43
1.88
18235--18361
60
2.1
60
84
5
159
33
23
6
37
1.80
18488--18605
60
2.0
60
83
6
150
38
4
24
32
1.75

Tables:   1

The End!