Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001706.1 Hibiscus syriacus cultivar Beakdansim tig00003424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53729

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7231--7262
16
2.0
16
93
0
55
56
21
12
9
1.64
7221--7269
10
5.3
10
74
18
52
55
20
12
12
1.68
7211--7269
26
2.3
26
90
0
100
55
20
11
11
1.67
8297--8337
14
2.9
14
85
0
55
56
17
12
14
1.68
8578--8656
26
3.1
25
66
23
65
32
16
7
43
1.76
8592--8672
25
3.2
24
66
22
58
32
14
8
44
1.76
8568--8709
51
2.8
51
86
1
194
35
13
7
44
1.71
12810--12890
26
3.2
25
64
22
60
35
14
8
40
1.77
12802--12902
51
2.0
51
96
0
184
36
13
8
40
1.76
13100--13174
31
2.4
31
100
0
150
10
14
41
33
1.81
13398--13475
38
2.1
38
97
0
147
14
10
34
41
1.79
14324--14410
40
2.2
38
89
4
129
49
0
0
50
1.00
23201--23226
10
2.6
10
100
0
52
7
23
26
42
1.81
25441--25480
21
1.9
21
94
0
71
30
15
7
47
1.72
25475--25573
33
3.0
33
94
1
164
32
7
15
45
1.73
25559--25613
13
4.2
13
75
13
58
34
3
12
49
1.59
25810--25866
21
2.7
21
91
0
96
19
26
26
28
1.99
26052--26085
18
1.9
18
88
5
52
41
11
8
38
1.73
26033--26089
15
3.7
15
77
9
51
35
12
10
42
1.77
26180--26211
16
2.0
17
88
11
50
43
21
21
12
1.86
29092--29143
27
1.9
26
85
14
70
34
7
9
48
1.65
32725--32796
30
2.4
30
90
2
108
33
16
15
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33966--34040
30
2.5
30
84
0
96
38
12
16
33
1.85
34129--34161
14
2.2
16
89
10
52
42
0
0
57
0.98
36128--36182
20
2.7
20
81
18
69
54
0
0
45
0.99
36321--36362
21
2.0
22
95
4
77
57
2
0
40
1.12
38492--38552
18
3.6
16
74
17
52
32
3
0
63
1.10
39153--39435
112
2.6
105
80
8
266
36
18
16
29
1.92
39264--39463
106
1.9
106
84
4
269
36
17
16
30
1.91
39697--39988
123
2.4
124
83
2
367
38
17
15
28
1.90
39697--39998
121
2.5
122
79
6
344
37
17
14
30
1.90
40140--40229
8
11.2
8
71
0
54
37
25
3
33
1.73
40167--40230
24
2.6
25
80
7
69
40
25
4
29
1.76
43086--43144
29
2.1
29
87
9
86
55
27
1
15
1.49
45790--45858
23
3.0
23
82
0
84
31
26
20
21
1.98
45873--46085
103
2.1
98
94
4
372
36
23
13
26
1.92
47125--47173
21
2.4
20
82
3
53
36
14
0
48
1.44
47145--47193
20
2.5
20
86
0
62
38
12
4
44
1.61
50921--50962
15
2.7
15
88
3
57
57
11
21
9
1.63

Tables:   1

The End!