Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001707.1 Hibiscus syriacus cultivar Beakdansim tig00003427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92961

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3566--3591
7
3.7
7
100
0
52
61
0
0
38
0.96
4266--4299
14
2.3
15
90
5
52
47
2
0
50
1.16
5004--5029
5
5.2
5
100
0
52
19
19
38
23
1.93
6559--6611
19
2.8
19
76
0
61
24
15
26
33
1.95
9610--9690
23
3.6
23
75
8
78
27
22
25
24
2.00
15521--15573
19
2.8
19
82
0
70
24
16
26
32
1.97
16029--16072
16
2.6
17
75
7
54
43
0
0
56
0.99
16794--16950
50
3.1
50
74
9
133
19
30
29
20
1.97
17031--17071
10
4.1
10
84
12
57
31
29
0
39
1.57
21410--21472
3
21.0
3
86
0
54
53
0
1
44
1.10
21630--22343
76
9.4
76
97
0
1302
34
22
19
23
1.97
22347--22652
167
1.8
168
91
0
506
39
11
13
35
1.80
23188--23242
22
2.5
23
85
8
87
41
12
9
36
1.75
23609--23762
54
2.9
54
96
0
281
22
25
15
35
1.94
25842--26067
114
2.0
114
92
0
380
30
20
15
33
1.94
31100--31138
14
2.8
14
85
11
53
58
7
17
15
1.59
35382--35438
3
19.0
3
88
0
51
54
0
0
45
0.99
36006--36133
64
2.0
67
89
7
201
27
19
18
34
1.95
36018--36178
64
2.5
63
82
5
180
27
21
17
34
1.95
39255--39375
49
2.4
51
89
5
176
28
22
23
25
1.99
41196--41237
22
1.9
22
90
0
66
23
23
23
28
2.00
42278--42342
2
32.5
2
100
0
130
49
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47072--47105
16
2.1
16
94
0
59
32
8
26
32
1.87
55789--55822
16
2.1
17
94
5
61
0
14
5
79
0.91
56222--56331
3
37.7
3
87
5
163
63
0
0
35
1.01
56463--57328
76
11.4
76
98
0
1662
36
22
20
21
1.95
58002--58056
22
2.5
22
90
0
92
38
14
12
34
1.84
60514--60807
83
3.5
83
95
1
518
36
23
13
26
1.92
68998--69031
16
2.1
17
94
5
61
0
14
5
79
0.91
69431--69551
3
39.7
3
86
6
172
64
0
0
34
1.00
69683--70592
76
12.0
76
98
0
1727
36
22
20
20
1.95
69683--70592
303
3.0
303
97
1
1718
36
22
20
20
1.95
69683--70592
379
2.4
378
98
1
1743
36
22
20
20
1.95
72364--72397
16
2.1
17
94
5
61
0
14
5
79
0.91
72797--72914
3
38.7
3
86
6
166
64
0
0
34
1.00
75162--75195
12
2.8
12
100
0
68
50
14
8
26
1.72
78509--78539
13
2.4
13
100
0
62
32
0
19
48
1.49
79602--79634
3
11.0
3
93
0
57
63
0
3
33
1.10
80309--80609
101
3.0
101
94
1
514
17
28
11
42
1.84
85018--85093
31
2.5
31
88
0
116
25
9
15
50
1.74

Tables:   1

The End!