genome.fa.s1708.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001708.1 Hibiscus syriacus cultivar Beakdansim tig00003430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120919

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357--1399	3	14.0	3	86	13	61	34	0	0	65	0.93
1358--1399	18	2.3	19	87	4	68	35	0	0	64	0.94
1679--1757	40	2.0	40	82	4	99	56	10	11	21	1.63
6284--6313	15	2.0	15	93	0	51	23	16	26	33	1.96
6249--6372	38	3.3	38	90	1	187	31	19	21	27	1.97
6322--6350	15	1.9	15	100	0	58	24	20	20	34	1.97
13514--13613	38	2.6	38	96	0	182	33	7	25	35	1.83
21530--21584	23	2.3	25	78	9	62	67	5	0	27	1.12
21630--21684	28	2.0	26	86	6	74	52	5	0	41	1.24
23002--23047	3	15.0	3	95	4	83	65	0	0	34	0.93
23245--23965	124	5.8	124	93	1	1178	25	19	13	41	1.88
23907--24003	40	2.4	40	98	0	185	20	22	7	49	1.73
24441--24495	22	2.5	22	81	0	65	36	10	14	38	1.81
27106--27335	115	2.0	114	94	2	408	29	21	14	35	1.93
28035--28089	28	2.0	26	86	6	74	52	5	0	41	1.24
29408--29462	3	18.0	3	92	3	83	61	3	0	34	1.13
32078--32106	6	4.8	6	100	0	58	34	31	17	17	1.93
32622--32660	20	1.9	21	94	5	71	35	17	17	28	1.94
34380--34411	2	16.0	2	100	0	64	50	0	0	50	1.00
38645--38673	3	9.7	3	100	0	58	68	0	0	31	0.89
42465--42509	24	1.9	24	82	13	58	40	17	11	31	1.85
46023--46069	25	1.9	24	83	12	60	65	6	6	21	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68852--68889	17	2.3	16	86	13	51	71	0	0	28	0.87
70657--70704	20	2.3	20	82	3	60	47	0	6	45	1.27
71798--71852	18	3.1	18	94	2	94	34	5	0	60	1.20
71798--71852	6	9.3	6	90	4	76	34	5	0	60	1.20
72358--72430	3	24.3	3	86	10	105	64	2	0	32	1.08
80971--81018	24	2.0	23	88	11	71	4	43	0	52	1.20
80976--81026	24	2.1	24	82	13	61	3	47	0	49	1.20
82118--82176	28	2.1	28	96	0	109	52	15	0	32	1.43
82382--82439	30	1.9	31	85	3	82	39	6	1	51	1.39
82611--82643	16	2.0	17	88	5	50	42	6	0	51	1.26
87279--87388	39	2.8	38	82	9	141	35	15	0	49	1.45
94602--94729	42	3.0	42	88	6	136	38	17	21	22	1.93
95781--95939	52	3.1	52	95	0	291	33	7	16	42	1.76
96066--96163	43	2.3	43	82	7	119	26	20	19	33	1.96
99366--99405	21	1.9	21	89	0	62	22	2	25	50	1.62
99534--99624	45	2.0	45	80	4	103	30	15	21	31	1.94
99611--99786	43	4.1	43	87	0	226	28	22	21	28	1.99
101644--101680	19	1.9	19	88	0	56	32	27	16	24	1.96
101976--102048	22	3.3	22	88	0	110	24	42	10	21	1.85
102433--102488	14	3.6	14	74	21	58	14	21	25	39	1.91
102426--102508	33	2.5	34	88	2	132	19	19	24	37	1.94
102481--102528	20	2.4	20	89	0	69	20	14	25	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102496--102538	20	2.2	20	82	0	50	16	13	20	48	1.80
104021--104070	21	2.4	21	79	0	55	22	16	32	30	1.95
104322--104383	31	2.0	31	87	9	90	22	8	17	51	1.71
104502--104661	20	8.6	19	69	19	115	36	23	20	19	1.95
104513--104657	74	2.0	74	95	0	263	36	22	20	20	1.95
104666--104702	19	1.9	19	94	0	65	8	16	27	48	1.74
104705--104812	20	5.4	20	87	1	137	22	17	24	36	1.95
104705--104812	40	2.7	40	86	1	155	22	17	24	36	1.95
104799--104842	20	2.2	20	100	0	88	13	11	22	52	1.72
105322--105420	21	4.7	21	72	3	83	22	35	18	24	1.96
105329--105410	42	2.0	42	87	0	119	20	40	15	23	1.91
106804--106869	30	2.2	30	97	0	123	30	3	12	54	1.52
106842--106956	54	2.1	54	87	3	169	31	3	17	47	1.64
106985--107235	34	6.9	34	69	15	135	22	19	21	35	1.96
107009--107160	73	2.1	74	89	1	234	23	20	22	34	1.97
107019--107255	20	12.4	20	74	12	194	22	19	21	35	1.96
107019--107255	95	2.5	92	82	6	273	22	19	21	35	1.96
107473--107507	18	1.9	18	94	0	61	17	5	25	51	1.67
114272--114330	20	3.0	20	73	9	57	30	23	18	27	1.98
116109--116165	20	2.8	21	83	5	80	57	22	8	10	1.59
116803--116871	21	3.3	21	76	11	88	17	15	26	40	1.89
116818--116931	20	5.6	20	72	12	88	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116803--116931	41	3.1	41	86	3	170	24	16	25	34	1.95

Tables:   1

The End!