Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001709.1 Hibiscus syriacus cultivar Beakdansim tig00003435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1326839
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 8
Found at i:285 original size:21 final size:20
Alignment explanation
Indices: 254--320 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
244 ATAAAATGAA
*
254 ATATAATAATATATATAAAT
1 ATATAAAAATATATATAAAT
* *
274 ACTATAAAAATATGTATATAT
1 A-TATAAAAATATATATAAAT
*
295 ATATAAAAATTATAAATTAAAT
1 ATATAAAAA-TATATA-TAAAT
317 ATAT
1 ATAT
321 GAAATTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 9 0.24
21 21 0.55
22 8 0.21
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (20 bp):
ATATAAAAATATATATAAAT
Found at i:1880 original size:14 final size:14
Alignment explanation
Indices: 1857--1895 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
1847 CCTCGGTAAG
*
1857 TTTCTCTTCTTTCT
1 TTTCTTTTCTTTCT
1871 TTTCTTTTCTTTCT
1 TTTCTTTTCTTTCT
1885 TTTCTGTTTCT
1 TTTCT-TTTCT
1896 GCTGCTGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (14 bp):
TTTCTTTTCTTTCT
Found at i:2391 original size:3 final size:3
Alignment explanation
Indices: 2383--2477 Score: 165
Period size: 3 Copynumber: 32.0 Consensus size: 3
2373 TTAATATATT
*
2383 TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
2431 TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2478 ATCAATATGG
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
2 2 0.02
3 85 0.98
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3303 original size:2 final size:2
Alignment explanation
Indices: 3296--3343 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
3286 AGTAAATAAG
3296 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3338 TA TA TA
1 TA TA TA
3344 CTTAGAGTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3505 original size:2 final size:2
Alignment explanation
Indices: 3498--3528 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
3488 ACTAAAGTAA
*
3498 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3529 AGCATGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:5333 original size:39 final size:39
Alignment explanation
Indices: 5278--5392 Score: 153
Period size: 39 Copynumber: 2.9 Consensus size: 39
5268 AGGTTGAATA
5278 AGTTCTTCAGACTATGAACTTCTTCTTCTTCTTCAGATG
1 AGTTCTTCAGACTATGAACTTCTTCTTCTTCTTCAGATG
* * *
5317 AGTTCTTCAGATTATGAAC-TCATT-TTTTCTCTTCATATG
1 AGTTCTTCAGACTATGAACTTC-TTCTTCT-TCTTCAGATG
* *
5356 AGTTCTTCAGACTATGAACTCCTTCTTCCTCTTCAGA
1 AGTTCTTCAGACTATGAACTTCTTCTTCTTCTTCAGA
5393 CTATGAACTC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
38 5 0.08
39 56 0.88
40 3 0.05
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.43
Consensus pattern (39 bp):
AGTTCTTCAGACTATGAACTTCTTCTTCTTCTTCAGATG
Found at i:5389 original size:65 final size:65
Alignment explanation
Indices: 5320--5458 Score: 215
Period size: 65 Copynumber: 2.1 Consensus size: 65
5310 TCAGATGAGT
* * * * *
5320 TCTTCAGATTATGAACTCATTTTTTCTCTTCATATGAGTTCTTCAGACTATGAACTCCTTCTTCC
1 TCTTCAGACTATGAACTCATTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCCTTCTTCC
* *
5385 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCCTTCTTTC
1 TCTTCAGACTATGAACTCATTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCCTTCTTCC
5450 TCTTCAGAC
1 TCTTCAGAC
5459 GAGTTCTTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.22, C:0.28, G:0.09, T:0.41
Consensus pattern (65 bp):
TCTTCAGACTATGAACTCATTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCCTTCTTCC
Found at i:5395 original size:26 final size:26
Alignment explanation
Indices: 5359--5416 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
5349 TCATATGAGT
5359 TCTTCAGACTATGAACTCCTTCTTCC
1 TCTTCAGACTATGAACTCCTTCTTCC
5385 TCTTCAGACTATGAACTCCTTCTTCC
1 TCTTCAGACTATGAACTCCTTCTTCC
5411 TCTTCA
1 TCTTCA
5417 AACGAGTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.34, G:0.07, T:0.40
Consensus pattern (26 bp):
TCTTCAGACTATGAACTCCTTCTTCC
Found at i:5428 original size:39 final size:39
Alignment explanation
Indices: 5385--5485 Score: 175
Period size: 39 Copynumber: 2.6 Consensus size: 39
5375 TCCTTCTTCC
5385 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGT
1 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGT
* *
5424 TCTTCAGACTATGAACTCCTTCTTTCTCTTCAGACGAGT
1 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGT
*
5463 TCTTCAGATTATGAACTCCTTCT
1 TCTTCAGACTATGAACTCCTTCT
5486 CGCTCTTTGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.39
Consensus pattern (39 bp):
TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGT
Found at i:5492 original size:104 final size:104
Alignment explanation
Indices: 5281--5485 Score: 320
Period size: 104 Copynumber: 2.0 Consensus size: 104
5271 TTGAATAAGT
* * * * * *
5281 TCTTCAGACTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCAGATTATGAACTCATTTTTTC
1 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCATTCTTTC
* *
5346 TCTTCATATGAGTTCTTCAGACTATGAACTCCTTCTTCC
66 TCTTCAGACGAGTTCTTCAGACTATGAACTCCTTCTTCC
*
5385 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCCTTCTTTC
1 TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCATTCTTTC
*
5450 TCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCT
66 TCTTCAGACGAGTTCTTCAGACTATGAACTCCTTCT
5486 CGCTCTTTGT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
104 91 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.41
Consensus pattern (104 bp):
TCTTCAGACTATGAACTCCTTCTTCCTCTTCAAACGAGTTCTTCAGACTATGAACTCATTCTTTC
TCTTCAGACGAGTTCTTCAGACTATGAACTCCTTCTTCC
Found at i:5958 original size:19 final size:20
Alignment explanation
Indices: 5936--5981 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
5926 AAATTAGATT
* *
5936 ATATTAAATTATT-AAATAC
1 ATATTAAAATATTAAAATAA
5955 ATATTAAAATATTAAAATAA
1 ATATTAAAATATTAAAATAA
5975 ATATTAA
1 ATATTAA
5982 TTTTCATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
ATATTAAAATATTAAAATAA
Found at i:8283 original size:6 final size:6
Alignment explanation
Indices: 8272--8296 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8262 CACCAAACGT
8272 CCCACA CCCACA CCCACA CCCACA C
1 CCCACA CCCACA CCCACA CCCACA C
8297 AAGCAACAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCACA
Found at i:12642 original size:20 final size:21
Alignment explanation
Indices: 12617--12668 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
12607 TTTTCCCAAT
*
12617 TCGCAATGCGAATAAG-TAAA
1 TCGCAATGCGAATAAGAAAAA
* **
12637 TCGCAACGCGAATTGGAAAAA
1 TCGCAATGCGAATAAGAAAAA
12658 TCGCAATGCGA
1 TCGCAATGCGA
12669 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATAAGAAAAA
Found at i:12682 original size:20 final size:20
Alignment explanation
Indices: 12657--12710 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
12647 AATTGGAAAA
12657 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
12677 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
12697 ATCGCAATGCGATA
1 ATCGCAATGCGATA
12711 ATACAAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:12701 original size:61 final size:61
Alignment explanation
Indices: 12654--12770 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
12644 GCGAATTGGA
* * * * * *
12654 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCACAACGCGATACTGACTATCGCAACGCGATAATAC
* * * *
12715 AAAATCGCAACGAGATATTGACTTTCACAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCACAACGCGATACTGACTATCGCAACGCGAT
12771 TTACATAGCG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCACAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:12756 original size:20 final size:20
Alignment explanation
Indices: 12733--12771 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
12723 AACGAGATAT
12733 TGACTTTCACAACGCGATTC
1 TGACTTTCACAACGCGATTC
*
12753 TGACTTTCGCAACGCGATT
1 TGACTTTCACAACGCGATT
12772 TACATAGCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (20 bp):
TGACTTTCACAACGCGATTC
Found at i:13374 original size:19 final size:19
Alignment explanation
Indices: 13327--13368 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
13317 ACGAGAGAAT
*
13327 CGCAACGCGAAATAAAAAA
1 CGCAACGCGAAACAAAAAA
*
13346 CGCAACGCGAAACAAAAAT
1 CGCAACGCGAAACAAAAAA
13365 CGCA
1 CGCA
13369 TTGCGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.52, C:0.26, G:0.17, T:0.05
Consensus pattern (19 bp):
CGCAACGCGAAACAAAAAA
Found at i:13410 original size:20 final size:19
Alignment explanation
Indices: 13364--13529 Score: 127
Period size: 20 Copynumber: 9.1 Consensus size: 19
13354 GAAACAAAAA
*
13364 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
13383 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
13402 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
13422 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* * **
13438 T-G-GTCGTGATAGTCATT
1 TCGCGTTGCGATTTTCATT
13455 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
13469 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
13488 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
13508 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
13528 TC
1 TC
13530 AACCAAAAGA
Statistics
Matches: 117, Mismatches: 17, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
14 19 0.16
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 40 0.34
20 49 0.42
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:13459 original size:33 final size:33
Alignment explanation
Indices: 13417--13504 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
13407 GTTGCGATTT
* * *
13417 TCATTTCGCGTTGCGATTGTCTGGTCGTGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
13450 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
13483 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
13505 ATTATCTCGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 35 0.70
34 15 0.30
ACGTcount: A:0.11, C:0.24, G:0.25, T:0.40
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:15609 original size:21 final size:21
Alignment explanation
Indices: 15585--15651 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
15575 TCATTCCTCG
15585 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
15606 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
15627 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
15648 AGAG
1 AGAG
15652 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:15609 original size:42 final size:42
Alignment explanation
Indices: 15558--15651 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
15548 CAACTCCTAT
* *
15558 CGTTGAAGAGGCCCCTATCATTCCTCG-AGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCA-TCCTCGAAGAGGT-CCCTCCCAC
* * *
15600 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCAC
*
15642 CATTCAAGAG
1 CGTTCAAGAG
15652 CCCGATTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.21
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCAC
Found at i:17028 original size:14 final size:14
Alignment explanation
Indices: 17008--17044 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
16998 GATTGTTTAA
17008 TTGATTTGTAAAA-
1 TTGATTTGTAAAAG
17021 TGTGATTTGTAAAAG
1 T-TGATTTGTAAAAG
17036 TTGATTTGT
1 TTGATTTGT
17045 TTAATTGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 20 0.91
15 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:17190 original size:20 final size:19
Alignment explanation
Indices: 17161--17208 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
17151 ATCGCAATGT
*
17161 GAAATGAAAATCACAACGC
1 GAAATTAAAATCACAACGC
*
17180 GAAAATTAAAATCGCAACGC
1 G-AAATTAAAATCACAACGC
17200 GAAATTAAA
1 GAAATTAAA
17209 TTCGCGTTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.54, C:0.17, G:0.15, T:0.15
Consensus pattern (19 bp):
GAAATTAAAATCACAACGC
Found at i:17206 original size:19 final size:19
Alignment explanation
Indices: 17151--17213 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
17141 AAAAAGTACT
* * *
17151 ATCGCAATGTGAAATGAAA
1 ATCGCAACGCGAAATTAAA
*
17170 ATCACAACGCGAAAATTAAA
1 ATCGCAACGCG-AAATTAAA
17190 ATCGCAACGCGAAATTAAA
1 ATCGCAACGCGAAATTAAA
*
17209 TTCGC
1 ATCGC
17214 GTTGCGATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.46, C:0.19, G:0.16, T:0.19
Consensus pattern (19 bp):
ATCGCAACGCGAAATTAAA
Found at i:17255 original size:33 final size:31
Alignment explanation
Indices: 17212--17372 Score: 205
Period size: 33 Copynumber: 4.9 Consensus size: 31
17202 AATTAAATTC
*
17212 GCGTTGCGATTTTCATTTCGCATTGCGATTCCC
1 GCGTTGCGATTTTCATTTCGCATTGCGATT--A
*
17245 TCGTTGCGATTTTCATTTCGCATTGCGAAATTA
1 GCGTTGCGATTTTCATTTCGCATTGCG--ATTA
*
17278 GCGTTGCGATTTTCAATTCGCATTGCGAAATTA
1 GCGTTGCGATTTTCATTTCGCATTGCG--ATTA
*
17311 GCGTTGCGATTTTCATTTCGCATTGCGATTCTC
1 GCGTTGCGATTTTCATTTCGCATTGCGA-T-TA
*
17344 TCGTTGCGATTTTCATTTCGCATTGCGAT
1 GCGTTGCGATTTTCATTTCGCATTGCGAT
17373 AGTAATTTCC
Statistics
Matches: 117, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
31 1 0.01
32 2 0.02
33 111 0.95
35 3 0.03
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (31 bp):
GCGTTGCGATTTTCATTTCGCATTGCGATTA
Found at i:17302 original size:66 final size:64
Alignment explanation
Indices: 17206--17372 Score: 228
Period size: 66 Copynumber: 2.5 Consensus size: 64
17196 ACGCGAAATT
**
17206 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATT--AGCGTTGCGATTTTCATTTCGCATTGC
17271 G
64 G
* *
17272 AAATTAGCGTTGCGATTTTCAATTCGCATTGCGAAATTAGCGTTGCGATTTTCATTTCGCATTGC
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG--ATTAGCGTTGCGATTTTCATTTCGCATTGC
17337 G
64 G
* *
17338 -ATTCTCTCGTTGCGATTTTCATTTCGCATTGCGAT
1 AAAT-TCGCGTTGCGATTTTCATTTCGCATTGCGAT
17373 AGTAATTTCC
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
64 2 0.02
65 2 0.02
66 83 0.92
68 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.41
Consensus pattern (64 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTAGCGTTGCGATTTTCATTTCGCATTGCG
Found at i:19892 original size:24 final size:24
Alignment explanation
Indices: 19858--19904 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
19848 CTGAAACATC
*
19858 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAT
*
19882 ATCAAAGTCCGGGTATTGACCAA
1 ATCAAAATCCGGGTATTGACCAA
19905 GACCAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAT
Found at i:19911 original size:24 final size:24
Alignment explanation
Indices: 19860--19911 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
19850 GAAACATCAT
* * *
19860 CAAAATCCGTGTATTGACCAATAT
1 CAAAATCCGGGTATTGACCAAGAC
*
19884 CAAAGTCCGGGTATTGACCAAGAC
1 CAAAATCCGGGTATTGACCAAGAC
19908 CAAA
1 CAAA
19912 TTTCGAATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.21
Consensus pattern (24 bp):
CAAAATCCGGGTATTGACCAAGAC
Found at i:20991 original size:20 final size:20
Alignment explanation
Indices: 20966--21026 Score: 122
Period size: 20 Copynumber: 3.0 Consensus size: 20
20956 ATTCATTTGA
20966 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
20986 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
21006 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
21026 C
1 C
21027 AATGCGAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.26, G:0.25, T:0.15
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:21066 original size:14 final size:16
Alignment explanation
Indices: 21046--21119 Score: 66
Period size: 19 Copynumber: 4.5 Consensus size: 16
21036 TGAAAATCGC
21046 ATTGCGATTTTC-TCG
1 ATTGCGATTTTCTTCG
21061 -TTGCGATTTTCATTTCG
1 ATTGCGATTTTC--TTCG
21078 CATTGCGATTTTCATTTCG
1 -ATTGCGATTTTC--TTCG
21097 CATTGCGATTTTC-TCG
1 -ATTGCGATTTTCTTCG
21113 -TTGCGAT
1 ATTGCGAT
21120 AGCCATTTCG
Statistics
Matches: 54, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
14 18 0.33
16 3 0.06
17 3 0.06
19 30 0.56
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTGCGATTTTCTTCG
Found at i:21083 original size:19 final size:19
Alignment explanation
Indices: 21042--21109 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
21032 GAAATGAAAA
21042 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
21058 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
21075 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
21094 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
21110 TCGTTGCGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.23
16 3 0.06
17 3 0.06
19 30 0.64
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:21245 original size:14 final size:14
Alignment explanation
Indices: 21226--21262 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
21216 CATCAATTAA
21226 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
21240 ACAAATCATCTTTT
1 ACAAATCAACATTT
21254 ACAAATCAA
1 ACAAATCAA
21263 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:23150 original size:20 final size:20
Alignment explanation
Indices: 23127--23169 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23117 CTTAAAATCA
23127 CAACGCGAAAATGACTATCG
1 CAACGCGAAAATGACTATCG
* * *
23147 CAACGTGGAAATGGCTATCG
1 CAACGCGAAAATGACTATCG
23167 CAA
1 CAA
23170 TACGAAATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
CAACGCGAAAATGACTATCG
Found at i:23198 original size:14 final size:14
Alignment explanation
Indices: 23179--23236 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
23169 ATACGAAATG
23179 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
23193 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
23209 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
23225 AAAATCGCAACG
1 AAAATCGCAACG
23237 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:23221 original size:32 final size:33
Alignment explanation
Indices: 23163--23241 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
23153 GGAAATGGCT
**
23163 ATCGCAATACGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
23196 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
23228 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
23242 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 30 0.68
33 14 0.32
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:23292 original size:14 final size:14
Alignment explanation
Indices: 23270--23327 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
23260 TTTCATTTCG
23270 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
23284 CGTTACGATTTCATTT
1 CGTTGCGATTT--TGT
23300 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
23316 CGTTGCGATTTT
1 CGTTGCGATTTT
23328 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 20 0.56
16 8 0.22
18 8 0.22
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:23334 original size:33 final size:33
Alignment explanation
Indices: 23257--23343 Score: 149
Period size: 32 Copynumber: 2.7 Consensus size: 33
23247 ATCGCATTGT
*
23257 GATTTTCATTTCGCGTTGCGATTTTGTCGTTAC
1 GATTTTCATTTCGCATTGCGATTTTGTCGTTAC
*
23290 GA-TTTCATTTCGCATTGCGATTTTGTCGTTGC
1 GATTTTCATTTCGCATTGCGATTTTGTCGTTAC
23322 GATTTTCATTTCGCATTGCGAT
1 GATTTTCATTTCGCATTGCGAT
23344 AGCCATTTCC
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
32 30 0.59
33 21 0.41
ACGTcount: A:0.14, C:0.18, G:0.21, T:0.47
Consensus pattern (33 bp):
GATTTTCATTTCGCATTGCGATTTTGTCGTTAC
Found at i:23362 original size:20 final size:19
Alignment explanation
Indices: 23328--23382 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
23318 TTGCGATTTT
*
23328 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
23347 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
23367 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
23383 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:23884 original size:18 final size:18
Alignment explanation
Indices: 23858--23902 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
23848 GTCGATCAGA
*
23858 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
23876 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
23894 TGATGGCTC
1 TGATGGCTC
23903 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:25229 original size:20 final size:20
Alignment explanation
Indices: 25204--25242 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25194 GAATAGTTTC
25204 TGAAAATGAAAATCGCAACA
1 TGAAAATGAAAATCGCAACA
**
25224 TGAAAATGACTATCGCAAC
1 TGAAAATGAAAATCGCAAC
25243 GAGAGAATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.18, G:0.15, T:0.18
Consensus pattern (20 bp):
TGAAAATGAAAATCGCAACA
Found at i:25741 original size:20 final size:20
Alignment explanation
Indices: 25715--25787 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
25705 GATTATGTAT
25715 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
25735 AATCGCGTTGTGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
25755 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
*
25775 TATCTCGTTGCGA
1 TATCGCGTTGCGA
25788 TTTTGTATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:27354 original size:19 final size:20
Alignment explanation
Indices: 27331--27375 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
27321 TATAAATATA
* *
27331 AAAAAATTACAAAAAATTAC
1 AAAAAATCAAAAAAAATTAC
27351 AAAAAATC-AAAAAAATTAC
1 AAAAAATCAAAAAAAATTAC
27370 AAAAAA
1 AAAAAA
27376 ATTAGTATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAAATCAAAAAAAATTAC
Found at i:27361 original size:8 final size:10
Alignment explanation
Indices: 27331--27375 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
27321 TATAAATATA
27331 AAAAAATTAC
1 AAAAAATTAC
27341 AAAAAATTAC
1 AAAAAATTAC
*
27351 AAAAAATCA-
1 AAAAAATTAC
27360 AAAAAATTAC
1 AAAAAATTAC
27370 AAAAAA
1 AAAAAA
27376 ATTAGTATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAATTAC
Found at i:29263 original size:22 final size:24
Alignment explanation
Indices: 29244--29287 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
29234 CATACAATAT
*
29244 AATTGTTAAAA-G-AAATCAATTA
1 AATTCTTAAAAGGAAAATCAATTA
29266 AATTCTTAAAAGGAAAATCAAT
1 AATTCTTAAAAGGAAAATCAAT
29288 CGATAAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 1 0.05
24 8 0.42
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.30
Consensus pattern (24 bp):
AATTCTTAAAAGGAAAATCAATTA
Found at i:35164 original size:4 final size:4
Alignment explanation
Indices: 35157--35186 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
35147 TAAACTAACT
35157 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
35187 TAATGTGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:42588 original size:50 final size:50
Alignment explanation
Indices: 42529--42628 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
42519 TTGCTTGCAG
42529 GGAATATTGAGTTGCTGAAGCATATACTGGCCAAGGGTGTTGAGGTTGAT
1 GGAATATTGAGTTGCTGAAGCATATACTGGCCAAGGGTGTTGAGGTTGAT
**
42579 GGAATATTGAGTTTTTGAAGCATATACTGGCCAAGGGTGTTGAGGTTGAT
1 GGAATATTGAGTTGCTGAAGCATATACTGGCCAAGGGTGTTGAGGTTGAT
42629 TCGCAAAGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.26, C:0.09, G:0.33, T:0.32
Consensus pattern (50 bp):
GGAATATTGAGTTGCTGAAGCATATACTGGCCAAGGGTGTTGAGGTTGAT
Found at i:58753 original size:29 final size:29
Alignment explanation
Indices: 58711--58769 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
58701 TTTTTCACCT
58711 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
58740 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
58769 A
1 A
58770 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:62802 original size:29 final size:29
Alignment explanation
Indices: 62760--62818 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
62750 ATTTTCACCT
62760 AACTAAATTAATGTAAGCAATGACATCAA
1 AACTAAATTAATGTAAGCAATGACATCAA
*
62789 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTAATGTAAGCAATGACATCAA
62818 A
1 A
62819 TTAATTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.24
Consensus pattern (29 bp):
AACTAAATTAATGTAAGCAATGACATCAA
Found at i:63314 original size:29 final size:29
Alignment explanation
Indices: 63282--63338 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
63272 AATATTTTAA
*
63282 AAAAAGATCC-TAATTTTTTCTAAAATATT
1 AAAAAGATCCATAAATTTTT-TAAAATATT
*
63311 AAAAATATCCATAAATTTTTTAAAATAT
1 AAAAAGATCCATAAATTTTTTAAAATAT
63339 CATAAAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (29 bp):
AAAAAGATCCATAAATTTTTTAAAATATT
Found at i:63325 original size:20 final size:19
Alignment explanation
Indices: 63302--63345 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
63292 TAATTTTTTC
63302 TAAAATATTAAAAATATCCA
1 TAAAATATTAAAAATAT-CA
* * *
63322 TAAATTTTTTAAAATATCA
1 TAAAATATTAAAAATATCA
63341 TAAAA
1 TAAAA
63346 CCCCCTAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAATATTAAAAATATCA
Found at i:63853 original size:20 final size:20
Alignment explanation
Indices: 63828--63869 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
63818 TTGATGAGAG
63828 TTGAGATTAGGGTTAGGGAT
1 TTGAGATTAGGGTTAGGGAT
63848 TTGAGATTAGGGTTAGGGAT
1 TTGAGATTAGGGTTAGGGAT
63868 TT
1 TT
63870 AAGTTTAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (20 bp):
TTGAGATTAGGGTTAGGGAT
Found at i:63877 original size:20 final size:20
Alignment explanation
Indices: 63831--63877 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
63821 ATGAGAGTTG
*
63831 AGATTAGGGTTAGGGATTTG
1 AGATTAGGGTTAGGGATTTA
63851 AGATTAGGGTTAGGGATTTA
1 AGATTAGGGTTAGGGATTTA
*
63871 AGTTTAG
1 AGATTAG
63878 AGATTTATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (20 bp):
AGATTAGGGTTAGGGATTTA
Found at i:74038 original size:3 final size:3
Alignment explanation
Indices: 74030--74056 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
74020 GTATATTCTT
74030 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
74057 TATTACTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:77047 original size:30 final size:30
Alignment explanation
Indices: 77011--77068 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
77001 TGGAAAAAAC
77011 AAAAT-AAACAAAATTAAT-AAAACAAATAAT
1 AAAATAAAAC-AAA-TAATAAAAACAAATAAT
77041 AAAATAAAACAAATAATAAAAACAAATA
1 AAAATAAAACAAATAATAAAAACAAATA
77069 TATATTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 4 0.15
30 18 0.69
31 4 0.15
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (30 bp):
AAAATAAAACAAATAATAAAAACAAATAAT
Found at i:77048 original size:17 final size:17
Alignment explanation
Indices: 77026--77061 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
77016 AAACAAAATT
77026 AATAAAACAAATAATAA
1 AATAAAACAAATAATAA
77043 AATAAAACAAATAATAA
1 AATAAAACAAATAATAA
77060 AA
1 AA
77062 ACAAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAACAAATAATAA
Found at i:77257 original size:36 final size:36
Alignment explanation
Indices: 77117--77390 Score: 204
Period size: 38 Copynumber: 7.4 Consensus size: 36
77107 AACCTTTTTC
* *
77117 AAACTATATA--ATATATACTTTCAAAAATGCTTTGAA
1 AAACTATATATTATATATATTTTC-AAAATG-TTTTAA
* * * * *
77153 AAAATATGTA-T-TATATGTTTCCAAAATATTTTAA
1 AAACTATATATTATATATATTTTCAAAATGTTTTAA
*
77187 AAA-T-TATATAATATATATTTTCAAAAATGTTTTAA
1 AAACTATATATTATATATATTTTC-AAAATGTTTTAA
*
77222 AAACTATATATTATATTTATTTTCAAAATGTTTTAA
1 AAACTATATATTATATATATTTTCAAAATGTTTTAA
* * *
77258 AAATTATATAATATATAAATATTTTCAAACATGTTTTCA
1 AAACTATAT-AT-TATATATATTTTCAAA-ATGTTTTAA
* *
77297 AAACTATATATTATATATATATTTAAAAATGGTTTCAA
1 AAACTATATATTATATATAT-TTTCAAAAT-GTTTTAA
* *
77335 AAA-TCATATAATATACT-TATTTTCGAAAACTGATTTTTTA
1 AAACT-ATATATTATA-TATATTTTC-AAAA-TG--TTTTAA
* *
77375 AAATTATATACTATAT
1 AAACTATATATTATAT
77391 TTTTCTAAAA
Statistics
Matches: 192, Mismatches: 28, Indels: 33
0.76 0.11 0.13
Matches are distributed among these distances:
32 3 0.02
33 1 0.01
34 17 0.09
35 19 0.10
36 37 0.19
37 32 0.17
38 47 0.24
39 19 0.10
40 16 0.08
41 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (36 bp):
AAACTATATATTATATATATTTTCAAAATGTTTTAA
Found at i:77306 original size:75 final size:74
Alignment explanation
Indices: 77127--77390 Score: 256
Period size: 75 Copynumber: 3.6 Consensus size: 74
77117 AAACTATATA
* * * * *
77127 ATATATACTTTCAAAAATGCTTTGAAAAA--ATAT-GTAT-TATATGTTTCCAAAATATTTTAAA
1 ATATATATTTTCAAAAATG-TTTTAAAAACTATATATTATATATATATTT-CAAAATGTTTTAAA
77188 AATTATAT-A-
64 AATTATATAAT
*
77197 ATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATTTAT-TTTCAAAATGTTTTAAAAA
1 ATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATATTTCAAAATGTTTTAAAAA
77261 TTATATAAT
66 TTATATAAT
* * * *
77270 ATATAAATATTTTCAAACATGTTTTCAAAACTATATATTATATATATATTTAAAAATGGTTTCAA
1 ATAT--ATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATATTTCAAAAT-GTTTTAA
*
77335 AAATCATATAAT
63 AAATTATATAAT
* * * *
77347 ATACT-TATTTTCGAAAACTGATTTTTTAAAATTATATACTATAT
1 ATA-TATATTTTC-AAAAATG--TTTTAAAAACTATATATTATAT
77391 TTTTCTAAAA
Statistics
Matches: 164, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
69 8 0.05
70 18 0.11
71 25 0.15
72 7 0.04
73 8 0.05
75 45 0.27
76 13 0.08
77 20 0.12
78 20 0.12
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (74 bp):
ATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATATTTCAAAATGTTTTAAAAA
TTATATAAT
Found at i:77438 original size:2 final size:2
Alignment explanation
Indices: 77433--77464 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
77423 TACGTGTATG
77433 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77465 AGCAAACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:78240 original size:28 final size:29
Alignment explanation
Indices: 78175--78243 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
78165 AGGTTTTGTG
* **
78175 TTTCAAGAGAAACATTTTCAAATTTTTTT
1 TTTCAAGAGAAACAATTTCAAATGGTTTT
78204 TTTCAAGAGAAACAATTTCAAA-GGTTTT
1 TTTCAAGAGAAACAATTTCAAATGGTTTT
78232 TTTCAAGAGAAA
1 TTTCAAGAGAAA
78244 TTGTCTCAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (29 bp):
TTTCAAGAGAAACAATTTCAAATGGTTTT
Found at i:78348 original size:37 final size:36
Alignment explanation
Indices: 78297--78374 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
78287 CAAAGATTGG
* *
78297 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAATT
1 TGTTTAAAGAGAAACTATCTCAAGAGAGAC-AAAATT
* *
78334 TGTTTAAAGGGAAACTATCTCAAGAGAGACGAAATT
1 TGTTTAAAGAGAAACTATCTCAAGAGAGACAAAATT
78370 TGTTT
1 TGTTT
78375 CAAGTGAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 10 0.27
37 27 0.73
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.28
Consensus pattern (36 bp):
TGTTTAAAGAGAAACTATCTCAAGAGAGACAAAATT
Found at i:78440 original size:36 final size:36
Alignment explanation
Indices: 78384--78659 Score: 356
Period size: 36 Copynumber: 7.7 Consensus size: 36
78374 TCAAGTGAAC
* * *
78384 AGACAAAATGTATTTCAAGGGAAACTGTCTTAAGAG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
* *
78420 AGACAAAATTTGTTTTAAGGGAAACTGTCTCAAGGG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
* * * *
78456 AGACGACATTTGTTTCAAGGGAAACTGTCTTAAGGG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
* * * *
78492 AGACAAAATTGGTTTAAAGGGAAACTATCTCAAGGG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
* * *
78528 AGAC-GAATTTTTTTTAAGGGAAACTGTCTCAAGAG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
* *
78563 AGACAAAATTTGTTTTAAGGGAAACTATCTCAAGAG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
* *
78599 AGACAAAATTTGTTTCAAGAGAAACTATCTCAAGAG
1 AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
*
78635 AGACAAAATTTGTTTCAAGAGAAAC
1 AGACAAAATTTGTTTCAAGGGAAAC
78660 AATCTCAAAA
Statistics
Matches: 213, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
35 29 0.14
36 184 0.86
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.26
Consensus pattern (36 bp):
AGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAG
Found at i:78467 original size:96 final size:97
Alignment explanation
Indices: 78299--78474 Score: 291
Period size: 96 Copynumber: 1.8 Consensus size: 97
78289 AAGATTGGTG
78299 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAAATTTGTTTAAAGGGAAACTATCTCAAGAGAGAC
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAAATTTGTTTAAAGGGAAACTATCTCAAGAGAGAC
78364 GAAATTTGTTTCAAGTGAACAGACAAAATGTA
66 GAAATTTGTTTCAAGTGAACAGACAAAATGTA
* * * * *
78396 TTTCAAGGGAAACTGTCTTAAGAGAGAC-AAAATTTGTTTTAAGGGAAACTGTCTCAAGGGAGAC
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAAATTTGTTTAAAGGGAAACTATCTCAAGAGAGAC
*
78460 GACATTTGTTTCAAG
66 GAAATTTGTTTCAAG
78475 GGAAACTGTC
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
96 47 0.64
97 26 0.36
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (97 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAAATTTGTTTAAAGGGAAACTATCTCAAGAGAGAC
GAAATTTGTTTCAAGTGAACAGACAAAATGTA
Found at i:78574 original size:107 final size:108
Alignment explanation
Indices: 78400--78659 Score: 360
Period size: 107 Copynumber: 2.4 Consensus size: 108
78390 AATGTATTTC
* * * * *
78400 AAGGGAAACTGTCTTAAGAGAGACAAAATTTGTTTTAAGGGAAACTGTCTCAAGGGAGACGACAT
1 AAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAAT
* * *
78465 TTGTTTCAAGGGAAACTGTCTTAAGGGAGACAAAATTGGTTTA
66 TTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTGGTTTA
* * *
78508 AAGGGAAACTATCTCAAGGGAGAC-GAATTTTTTTTAAGGGAAACTGTCTCAAGAGAGACAAAAT
1 AAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAAT
* * *
78572 TTGTTTTAAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTC
66 TTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTGGTTTA
* * *
78615 AAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGAGAAAC
1 AAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAAC
78660 AATCTCAAAA
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
107 94 0.72
108 37 0.28
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (108 bp):
AAGGGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAAT
TTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTGGTTTA
Found at i:78618 original size:21 final size:21
Alignment explanation
Indices: 78592--78661 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 21
78582 GGAAACTATC
78592 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
* * *
78613 TC-A-AGAG---AAA-CTATC
1 TCAAGAGAGACAAAATTTGTT
78628 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
*
78649 TCAAGAGAAACAA
1 TCAAGAGAGACAA
78662 TCTCAAAAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 12
0.65 0.13 0.22
Matches are distributed among these distances:
15 4 0.11
16 4 0.11
17 4 0.11
19 4 0.11
20 4 0.11
21 16 0.44
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:78659 original size:143 final size:143
Alignment explanation
Indices: 78400--78667 Score: 419
Period size: 143 Copynumber: 1.9 Consensus size: 143
78390 AATGTATTTC
* * * * *
78400 AAGGGAAACTGTCTTAAGAGAGACAAAATTTGTTTTAAGGGAAACTGTCTCAAGGGAGACGACAT
1 AAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTATCTCAAGAGAGACAAAAT
* * * * * *
78465 TTGTTTCAAGGGAAACTGTCTTAAGGGAGACAAAATTGGTTTAAAGGGAAACTATCTCAAGGGAG
66 TTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTGGTTTAAAGAGAAACAATCTCAAGGGAG
78530 ACGAATTTTTTTT
131 ACGAATTTTTTTT
78543 AAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTATCTCAAGAGAGACAAAAT
1 AAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTATCTCAAGAGAGACAAAAT
* *
78608 TTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAA
66 TTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTGGTTTAAAGAGAAACAATCTCAA
78668 AAGTTTTTGT
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
143 112 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (143 bp):
AAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGGGAAACTATCTCAAGAGAGACAAAAT
TTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTGGTTTAAAGAGAAACAATCTCAAGGGAG
ACGAATTTTTTTT
Found at i:78874 original size:84 final size:84
Alignment explanation
Indices: 78672--79628 Score: 1013
Period size: 84 Copynumber: 11.6 Consensus size: 84
78662 TCTCAAAAGT
* * * * * * *
78672 TTTTGTTGACAGATAACTCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGGAGCTGAG
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAG
* * **
78737 TGTAATCGAACTCGGGGGTC
65 CGTAGTCGAACTCGAAGGTC
* * * *
78757 ---T-TTGGCAGATAGCCCTTCTCAACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGC
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
* *
78818 ATAGTCGAACTTGAAGGTC
66 GTAGTCGAACTCGAAGGTC
*
78837 TTTTGTTGGCAGATAACCC-TCATCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAG
1 TTTTGTTGGCAGATAACCCTTC-TCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAG
* *
78901 CGGAGTCAAACTCGAAGGTC
65 CGTAGTCGAACTCGAAGGTC
* ** * * * * ***
78921 TTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCACGAGGCTGAG
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGA-GCTGAG
* * *
78986 TGTAATCAAACTCG-AGG--
65 CGTAGTCGAACTCGAAGGTC
* * * *
79003 TTCT-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGC
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
*
79067 GTAGTCGAACTCAAAGGTC
66 GTAGTCGAACTCGAAGGTC
* * ** * * *
79086 TTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATATTGCAAATGATATGCCCTCGAAGCTGAG
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAG
* * *
79151 TGTAATCGAACTCGAGGGTC
65 CGTAGTCGAACTCGAAGGTC
* * *
79171 ---T-TTGCCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
*
79232 GTAGTCGAACTCAAAGGTC
66 GTAGTCGAACTCGAAGGTC
* * *
79251 TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAG
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAG
* *
79316 TGTAATCGAACTCGAAGGTC
65 CGTAGTCGAACTCGAAGGTC
* *
79336 ---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
*
79397 GTAGTCGAACTCAAAGGTC
66 GTAGTCGAACTCGAAGGTC
* ** * * * * *
79416 TTTGGTAAG-AGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCTTGGAGCTGAGC
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
*
79480 GGAGTCGAACTCGAAGGTC
66 GTAGTCGAACTCGAAGGTC
* * * *
79499 TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAG
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAG
* *
79564 TGTAATCGAACTCGAAGGTC
65 CGTAGTCGAACTCGAAGGTC
* *
79584 ---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
1 TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATG
79629 GTTTAAAAAA
Statistics
Matches: 720, Mismatches: 129, Indels: 50
0.80 0.14 0.06
Matches are distributed among these distances:
80 97 0.13
81 205 0.28
82 4 0.01
83 77 0.11
84 235 0.33
85 102 0.14
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (84 bp):
TTTTGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
GTAGTCGAACTCGAAGGTC
Found at i:79013 original size:165 final size:165
Alignment explanation
Indices: 78705--79627 Score: 1096
Period size: 165 Copynumber: 5.6 Consensus size: 165
78695 AGCCTTGAGT
* * * * ***
78705 TATGCTGTAAATGATGTGCCCTCGGAGCTGAGTGTAATCGAACTCGGGGGTCTTT-G-G-CAGAT
1 TATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAGAT
* * * * * * ** * *
78767 AGCCCTTCTCAACTTAAGCTATGCTGCAAATGATGTGCCTTAG-AGCTGAGCATAGTCGAACTTG
65 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG
* * *
78831 AAGGTCTTTTGTTGGCAGATAACCC-TCATCGACTTAAGT
130 AAGG--TTCT-TTGGCAGATAGCCCTTC-TCGACTTAAGC
* * * * *
78870 TATGCTGCAAATGATATGCCTTGGAGCTGAGCGGAGTCAAACTCGAAGGTCTTTTGGTCACAGAT
1 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGGTGACAGAT
* * * * * * * *
78935 AACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCACGAGGCTGAGTGTAATCAAACTCG
65 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG
79000 -AGGTTCTTTGGCAGATAGCCCTTCTCGACTTAAGC
130 AAGGTTCTTTGGCAGATAGCCCTTCTCGACTTAAGC
*
79035 TATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAGAT
1 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGG-TGACAGAT
**
79100 AACCCTTCTCGACTTAAGTTATATTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG
65 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG
* *
79165 -AGGGTCTTTGCCAGATAGCCCTTCTCGACTTAAGC
130 AAGGTTCTTTGGCAGATAGCCCTTCTCGACTTAAGC
*
79200 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGAT
1 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGG-TGACAGAT
*
79265 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGAACTCG
65 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG
79330 AAGG-TCTTTGGCAGATAGCCCTTCTCGACTTAAGC
130 AAGGTTCTTTGGCAGATAGCCCTTCTCGACTTAAGC
* *
79365 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTAAGAGATA
1 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAGATA
* * * * * * * * *
79430 ACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATG-CCTTGGAGCTGAGCGGAGTCGAACTCGA
66 ACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGA
* * *
79494 AGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGT
131 AGGT-TCT--TTGGCAGATAGCCCTTCTCGACTTAAGC
* * * * * *
79532 TATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTT-G-G-CAGAT
1 TATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAGAT
* *
79594 AGCCCTTCTCGACTTAAGCTATGCTGCAAATGAT
65 AACCCTTCTCGACTTAAGTTATGCTGCAAATGAT
79628 GGTTTAAAAA
Statistics
Matches: 664, Mismatches: 81, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
163 27 0.04
164 69 0.10
165 428 0.64
166 9 0.01
167 44 0.07
168 72 0.11
169 15 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (165 bp):
TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAGATA
ACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGA
AGGTTCTTTGGCAGATAGCCCTTCTCGACTTAAGC
Found at i:79118 original size:249 final size:246
Alignment explanation
Indices: 78680--79627 Score: 1144
Period size: 249 Copynumber: 3.8 Consensus size: 246
78670 GTTTTTGTTG
* *
78680 ACAGATAACTCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGGAGCTGAGTGTAATCG
1 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTC-GAGCTGAGCGTAATCG
** * * *
78745 AACTCG-GGGGTCT-TTGGCAGATAGCCCTTCTCAACTTAAGCTATGCTGCAAATGATGTGCCTT
65 AACTCGAGGTCTCTGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTT
* * * *
78808 AG-AGCTGAGCATAGTCGAACTTGAAGGTCTTTTGTTGGCAGATAACCC-TCATCGACTTAAGTT
130 AGAAGCTGAGCGTAATCGAACTCGAAGGTC---T-TTGGCAGATAACCCTTC-TCGACTTAAGCT
* *
78871 ATGCTGCAAATGATATGCCTTGGAGCTGAGCGGAGTCAAACTCGAAGGTCTTTTGGTC
190 ATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTC
* * *
78929 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCACGAGGCTGAGTGTAATCA
1 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA-GCTGAGCGTAATCG
* *
78994 AACTCGAGGT-TCT-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT
65 AACTCGAGGTCTCTGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTT
* * *
79057 AG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTA
130 AGAAGCTGAGCGTAATCGAACTCGAAGGTCTTT-G--G-CAGATAACCCTTCTCGACTTAAGCTA
** * * * * *
79121 TATTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTT-G-C
191 TGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTC
* * * * * * * * *
79176 -CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
1 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAGCTGAGCGTAATCGA
* * *
79240 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCC
66 ACTC-GAGGTCTCT-GTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATG-CC
* *
79305 TT-GAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATG
128 TTAGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATG
* * *
79369 CTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTA
193 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTC
* * * * * *
79423 AGAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCTTGGAGCTGAGCGGAGTCGA
1 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAGCTGAGCGTAATCGA
* * *
79488 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCC
66 ACTCG-AGGTCTCT-GTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCT
* * *
79553 TCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
129 TAGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGC
79618 TGCAAATGAT
194 TGCAAATGAT
79628 GGTTTAAAAA
Statistics
Matches: 620, Mismatches: 60, Indels: 39
0.86 0.08 0.05
Matches are distributed among these distances:
245 48 0.08
246 84 0.14
247 7 0.01
248 192 0.31
249 228 0.37
250 61 0.10
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (246 bp):
ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAGCTGAGCGTAATCGA
ACTCGAGGTCTCTGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTA
GAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
CAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTC
Found at i:80687 original size:84 final size:89
Alignment explanation
Indices: 80593--80816 Score: 257
Period size: 95 Copynumber: 2.5 Consensus size: 89
80583 GGCTAGCTAA
*
80593 ATCCATAAAGCCG-GAGCGTTTAACCAATTGCTCTAGAGGGATAACCCAA-TA-TGTA-A-A-AA
1 ATCCATAAAGCCGAG-GCGTTTAACCAATTGCTCTAGAGGGACAACCCAATTATTGTATAGACAA
* *
80652 T-CTTTATCAGGTTAGCTGAAATCTT
65 TCCTTTATCAGGCTAGCTG-AATATT
* *
80677 ATCCATAAAGCCGAGGCGTTTAACCAATTGC-CTTAGAGGGACAGCTCAAGCTTTATTGTATAGT
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTC-TAGAGGGACAACCCAA---TTATTGTATAG-
80741 ACAATCACCTTTATCAGGCTAGCTGAATATT
61 ACAAT--CCTTTATCAGGCTAGCTGAATATT
*
80772 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGACAAC
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTCTAGAGGGACAAC
80817 TCAAGCTTTA
Statistics
Matches: 118, Mismatches: 7, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
83 1 0.01
84 42 0.36
85 1 0.01
88 2 0.02
89 4 0.03
90 1 0.01
92 1 0.01
93 3 0.03
95 47 0.40
96 16 0.14
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (89 bp):
ATCCATAAAGCCGAGGCGTTTAACCAATTGCTCTAGAGGGACAACCCAATTATTGTATAGACAAT
CCTTTATCAGGCTAGCTGAATATT
Found at i:80820 original size:95 final size:96
Alignment explanation
Indices: 80653--80833 Score: 319
Period size: 95 Copynumber: 1.9 Consensus size: 96
80643 ATGTAAAAAT
* *
80653 CTTTATCAGGTTAGCTGAAATCTTATCCATAAAGCCGAGGCGTTTAACCAATTGCCTTAGAGGGA
1 CTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGAGGCGTTTAACCAATTGCCTTAGAGGGA
*
80718 CAGCTCAAGCTTTATTGTATAGTACAATCAC
66 CAACTCAAGCTTTATTGTATAGTACAATCAC
*
80749 CTTTATCAGGCTAGCTG-AATATTATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGA
1 CTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGAGGCGTTTAACCAATTGCCTTAGAGGGA
80813 CAACTCAAGCTTTATTGTATA
66 CAACTCAAGCTTTATTGTATA
80834 TATAATAGTA
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
95 65 0.80
96 16 0.20
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (96 bp):
CTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGAGGCGTTTAACCAATTGCCTTAGAGGGA
CAACTCAAGCTTTATTGTATAGTACAATCAC
Found at i:86010 original size:12 final size:12
Alignment explanation
Indices: 85993--86043 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
85983 TAAACAAAAT
*
85993 TAATAAAACGAA
1 TAATAAAACAAA
86005 TAATAAAA-ATAA
1 TAATAAAACA-AA
*
86017 AAATAAAACAAA
1 TAATAAAACAAA
86029 TAATAAAAACAAA
1 TAAT-AAAACAAA
86042 TA
1 TA
86044 TATATTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 22 0.67
13 11 0.33
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.18
Consensus pattern (12 bp):
TAATAAAACAAA
Found at i:86232 original size:36 final size:36
Alignment explanation
Indices: 86092--86333 Score: 210
Period size: 37 Copynumber: 6.7 Consensus size: 36
86082 AACCTTTTTC
* *
86092 AAACTATATA--ATATATACTTTCAAAAATGCTTTGAA
1 AAACTATATATTATATATATTTTC-AAAATG-TTTTAA
* * * * *
86128 AAAATATGTA-T-TATATGTTTCCAAAATATTTTAA
1 AAACTATATATTATATATATTTTCAAAATGTTTTAA
*
86162 AAA-T-TATATAATATATATTTTCAAAAATGTTTTAA
1 AAACTATATATTATATATATTTTC-AAAATGTTTTAA
*
86197 AAACTATATATTATATTTATTTTCAAAATGTTTTAA
1 AAACTATATATTATATATATTTTCAAAATGTTTTAA
* * *
86233 AAATTATATAATATATAAATATTTTCAAACATGTTTTCA
1 AAACTATAT-AT-TATATATATTTTCAAA-ATGTTTTAA
* * *
86272 AAACTATATATTATATATATATTTAAAAATGGTTTCA
1 AAACTATATATTATATATAT-TTTCAAAATGTTTTAA
*
86309 AAACTCATATAATATACT-TATTTTC
1 AAACT-ATATATTATA-TATATTTTC
86334 GAAACTGATT
Statistics
Matches: 170, Mismatches: 24, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
32 3 0.02
33 1 0.01
34 17 0.10
35 19 0.11
36 37 0.22
37 42 0.25
38 34 0.20
39 17 0.10
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (36 bp):
AAACTATATATTATATATATTTTCAAAATGTTTTAA
Found at i:86281 original size:75 final size:74
Alignment explanation
Indices: 86102--86333 Score: 246
Period size: 75 Copynumber: 3.2 Consensus size: 74
86092 AAACTATATA
* * * * *
86102 ATATATACTTTCAAAAATGCTTTGAAAAA--ATAT-GTAT-TATATGTTTCCAAAATATTTTAAA
1 ATATATATTTTCAAAAATG-TTTTAAAAACTATATATTATATATATATTT-CAAAATGTTTTAAA
86163 AATTATAT-A-
64 AATTATATAAT
*
86172 ATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATTTAT-TTTCAAAATGTTTTAAAAA
1 ATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATATTTCAAAATGTTTTAAAAA
86236 TTATATAAT
66 TTATATAAT
* * * *
86245 ATATAAATATTTTCAAACATGTTTTCAAAACTATATATTATATATATATTTAAAAATGGTTTCAA
1 ATAT--ATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATATTTCAAAAT-GTTTTAA
* *
86310 AACTCATATAAT
63 AAATTATATAAT
86322 ATACT-TATTTTC
1 ATA-TATATTTTC
86334 GAAACTGATT
Statistics
Matches: 139, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
69 8 0.06
70 18 0.13
71 25 0.18
72 7 0.05
73 8 0.06
75 45 0.32
76 8 0.06
77 19 0.14
78 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (74 bp):
ATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATATTTCAAAATGTTTTAAAAA
TTATATAAT
Found at i:86357 original size:75 final size:73
Alignment explanation
Indices: 86150--86398 Score: 215
Period size: 75 Copynumber: 3.4 Consensus size: 73
86140 ATATGTTTCC
* * * * *
86150 AAAATATTTTAAAAATTATATAAT--ATATATTTTCAAAAATGTTTTAAAAACTATATATTATAT
1 AAAATGTTTCAAAAATCATATAATATATATATTTTCAAACATGTTTTCAAAACTATATATTATAT
* *
86213 TTATTTTC
66 ATATTTTA
* *
86221 AAAATGTTTTAAAAATTATATAATATATAAATATTTTCAAACATGTTTTCAAAACTATATATTAT
1 AAAATGTTTCAAAAATCATATAATATAT--ATATTTTCAAACATGTTTTCAAAACTATATATTAT
86286 ATATATATTTA
64 ATATAT-TTTA
* * * *
86297 AAAATGGTTTCAAAACTCATATAATATACT-TATTTTCGAAAC-TGATTTCTGAAAATTATATAC
1 AAAAT-GTTTCAAAAATCATATAATATA-TATATTTTC-AAACATG-TTT-TCAAAACTATATAT
86360 TATAT-T-TTTCTA
61 TATATATATTT-TA
* * *
86372 AAACAT-TTTCAAAGATTATATTATATA
1 AAA-ATGTTTCAAAAATCATATAATATA
86399 CGTATATACA
Statistics
Matches: 151, Mismatches: 15, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
71 23 0.15
73 2 0.01
74 19 0.13
75 53 0.35
76 18 0.12
77 35 0.23
78 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (73 bp):
AAAATGTTTCAAAAATCATATAATATATATATTTTCAAACATGTTTTCAAAACTATATATTATAT
ATATTTTA
Found at i:86406 original size:2 final size:2
Alignment explanation
Indices: 86388--86442 Score: 58
Period size: 2 Copynumber: 28.0 Consensus size: 2
86378 TTTCAAAGAT
** * *
86388 TA TA T- TA TA TA CG TA TA TA CA TA TG TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
86429 TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA
86443 AAGCAAACAA
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:86417 original size:12 final size:12
Alignment explanation
Indices: 86388--86442 Score: 74
Period size: 12 Copynumber: 4.5 Consensus size: 12
86378 TTTCAAAGAT
*
86388 TATATTATATACG
1 TATA-TATATATG
*
86401 TATATACATATG
1 TATATATATATG
*
86413 TATATATATATA
1 TATATATATATG
86425 TATATATATATG
1 TATATATATATG
86437 TATATA
1 TATATA
86443 AAGCAAACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
12 33 0.89
13 4 0.11
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (12 bp):
TATATATATATG
Found at i:88937 original size:4 final size:4
Alignment explanation
Indices: 88928--90517 Score: 3159
Period size: 4 Copynumber: 398.2 Consensus size: 4
88918 TTAAAATATT
88928 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
88976 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89024 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89072 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89120 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89168 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89216 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89264 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89312 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89360 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89408 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89456 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89504 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89552 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89600 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89648 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89696 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89744 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89792 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89840 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89888 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89936 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
89984 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90032 ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90079 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90127 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90175 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90221 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90269 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90317 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90365 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90413 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90461 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
90509 ATAC ATAC A
1 ATAC ATAC A
90518 CGGTTTCCAT
Statistics
Matches: 1583, Mismatches: 0, Indels: 6
1.00 0.00 0.00
Matches are distributed among these distances:
2 2 0.00
3 3 0.00
4 1578 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:92262 original size:426 final size:426
Alignment explanation
Indices: 91455--92304 Score: 1400
Period size: 426 Copynumber: 2.0 Consensus size: 426
91445 TTATATGCCT
* * *
91455 TTTTTGGAATTTATAGGAAAATCCAGGGACTTAAACCCAAATTTACCCATTTTTATTACCAAGTG
1 TTTTAGGAAGTTACAGGAAAATCCAGGGACTTAAACCCAAATTTACCCATTTTTATTACCAAGTG
* *
91520 AAAAATTTAACCCCTCCCTTGAGCAATCTGATTTTCCCCAAAAATTAAACCCAAAATTCATCATC
66 AAAAATTTAACCCCTCCCCTGAGCAATCTGATTTTCCCAAAAAATTAAACCCAAAATTCATCATC
*** * * *
91585 TTTGTCAGCCACCTTTACTGCCTTAATCCGTCGCCGTCCAGCTACCGTTCGTCGCTCTAACACCA
131 TACATCAACCACCTTTACTGCCTTAATCCGTCACCGTCCAGCCACCGTTCGTCGCTCTAACACCA
* * * *
91650 CCAATAGACTCATCGTTGAATGGTGAACAAAATCTGACCCCCATGTCATCGTGAATCGACGCCAT
196 CCAATAGACTCACCGTCGAACGGTGAACAAAATCTGACCCCCATGTCATCATGAATCGACGCCAT
91715 TCACCGTAAAACTTGACGTGAAACTTCATCATTTTTAACCCGACCGCCGCATGGTTTCCGTCGAT
261 TCACCGTAAAACTTGACGTGAAACTTCATCATTTTTAACCCGACCGCCGCATGGTTTCCGTCGAT
* * * *
91780 TTCGGTCGATCAACCGGTCTGTTCACCTCACAGCATGCACCATTGGACTTACCATCACTGTGCGC
326 TCCGGTCGATCAACCCGTCTGTTCACCTCACAGCATGCACCATTGGACTCACCATCACCGTGCGC
91845 TCAAAACCCGACCGAAATCGTCATGATGTTGTTGTC
391 TCAAAACCCGACCGAAATCGTCATGATGTTGTTGTC
* * *
91881 TTTTAGGAAGTTACAGGAAAATCCAGGGACTTAAACTCGAATTTACCCATTTTTATTACCCAGTG
1 TTTTAGGAAGTTACAGGAAAATCCAGGGACTTAAACCCAAATTTACCCATTTTTATTACCAAGTG
91946 AAAAATTTAACCCCTCCCCTGAGCAATCTGATTTTCCCAAAAAATTAAA-CCACAAATTCATCAT
66 AAAAATTTAACCCCTCCCCTGAGCAATCTGATTTTCCCAAAAAATTAAACCCA-AAATTCATCAT
92010 CTACATCAACCACCTTTA-TCGCCTTAATCCGTCACCGTCCAGCCACCGTTCGTCGCTCTAACAC
130 CTACATCAACCACCTTTACT-GCCTTAATCCGTCACCGTCCAGCCACCGTTCGTCGCTCTAACAC
* *
92074 CACCAATAGACTCACCGTCGAACGGTGAACAAAATCTGACCCCTATGTCGTCATGAATC-AGCGC
194 CACCAATAGACTCACCGTCGAACGGTGAACAAAATCTGACCCCCATGTCATCATGAATCGA-CGC
* *
92138 CATTCACCGTAAAACTTGACGTGAAACTTCATCATTTTTAACCTGACCGCCGCATGTTTTCCGTC
258 CATTCACCGTAAAACTTGACGTGAAACTTCATCATTTTTAACCCGACCGCCGCATGGTTTCCGTC
*
92203 GATTCCGGTCGATCAACCCGTCTGTTCACCTCACCGCATGCACCATTGGACTCACCATCACCGTG
323 GATTCCGGTCGATCAACCCGTCTGTTCACCTCACAGCATGCACCATTGGACTCACCATCACCGTG
*
92268 CGCTCAAAACCCGACCGAAATCGTCGTGATGTTGTTG
388 CGCTCAAAACCCGACCGAAATCGTCATGATGTTGTTG
92305 CTCTATCGTC
Statistics
Matches: 393, Mismatches: 28, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
425 5 0.01
426 388 0.99
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (426 bp):
TTTTAGGAAGTTACAGGAAAATCCAGGGACTTAAACCCAAATTTACCCATTTTTATTACCAAGTG
AAAAATTTAACCCCTCCCCTGAGCAATCTGATTTTCCCAAAAAATTAAACCCAAAATTCATCATC
TACATCAACCACCTTTACTGCCTTAATCCGTCACCGTCCAGCCACCGTTCGTCGCTCTAACACCA
CCAATAGACTCACCGTCGAACGGTGAACAAAATCTGACCCCCATGTCATCATGAATCGACGCCAT
TCACCGTAAAACTTGACGTGAAACTTCATCATTTTTAACCCGACCGCCGCATGGTTTCCGTCGAT
TCCGGTCGATCAACCCGTCTGTTCACCTCACAGCATGCACCATTGGACTCACCATCACCGTGCGC
TCAAAACCCGACCGAAATCGTCATGATGTTGTTGTC
Found at i:94325 original size:24 final size:23
Alignment explanation
Indices: 94293--94346 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 23
94283 TATAAATTGC
94293 ACCGAAGTGCCACGTAGAATATGT
1 ACCGAAGTGCCACGTAGAA-ATGT
94317 ACCGAAGTGCCACGTAGAAATGT
1 ACCGAAGTGCCACGTAGAAATGT
*
94340 CCCGAAG
1 ACCGAAG
94347 GACCGCGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17
Consensus pattern (23 bp):
ACCGAAGTGCCACGTAGAAATGT
Found at i:94344 original size:23 final size:23
Alignment explanation
Indices: 94294--94369 Score: 91
Period size: 23 Copynumber: 3.3 Consensus size: 23
94284 ATAAATTGCA
*
94294 CCGAAGTGCCACGTAGAATATGTA
1 CCGAAGTGCCACGTAGAA-ATGTC
94318 CCGAAGTGCCACGTAGAAATGTC
1 CCGAAGTGCCACGTAGAAATGTC
* *
94341 CCGAAG-GACCGCGTATAAATGTC
1 CCGAAGTG-CCACGTAGAAATGTC
*
94364 TCGAAG
1 CCGAAG
94370 GACCATGTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
22 1 0.02
23 28 0.60
24 18 0.38
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (23 bp):
CCGAAGTGCCACGTAGAAATGTC
Found at i:94370 original size:23 final size:23
Alignment explanation
Indices: 94305--94427 Score: 113
Period size: 23 Copynumber: 5.3 Consensus size: 23
94295 CGAAGTGCCA
* *
94305 CGTAGAATATGTACCGAAGTG-CCA
1 CGTAGAA-ATGTCCCGAAG-GACCG
94329 CGTAGAAATGTCCCGAAGGACCG
1 CGTAGAAATGTCCCGAAGGACCG
* * *
94352 CGTATAAATGTCTCGAAGGACCA
1 CGTAGAAATGTCCCGAAGGACCG
* * **
94375 TGTAGAATTGTTTCGAAGGACCG
1 CGTAGAAATGTCCCGAAGGACCG
* *
94398 CGTAGAATTTTCCCGAAGGACCG
1 CGTAGAAATGTCCCGAAGGACCG
*
94421 CATAGAA
1 CGTAGAA
94428 TCCCCGACTC
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
22 1 0.01
23 75 0.90
24 7 0.08
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (23 bp):
CGTAGAAATGTCCCGAAGGACCG
Found at i:94565 original size:14 final size:14
Alignment explanation
Indices: 94504--94612 Score: 58
Period size: 14 Copynumber: 7.4 Consensus size: 14
94494 TTATAACATT
*
94504 TCACATAGCTTGTA
1 TCACATAGCTTATA
***
94518 TCACATAGAAAAATAA
1 TCACATAG-CTTAT-A
* * *
94534 TCACATAGATCATG
1 TCACATAGCTTATA
94548 TCACATAGCTTATA
1 TCACATAGCTTATA
* *
94562 TCACATATTCATATAA
1 TCACATA-GCTTAT-A
*
94578 TCACGTAG-TTAAGTA
1 TCACATAGCTT-A-TA
*
94593 TCACATAACTTATA
1 TCACATAGCTTATA
94607 TCACAT
1 TCACAT
94613 TTTCGCATAA
Statistics
Matches: 71, Mismatches: 17, Indels: 14
0.70 0.17 0.14
Matches are distributed among these distances:
14 35 0.49
15 17 0.24
16 19 0.27
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (14 bp):
TCACATAGCTTATA
Found at i:94578 original size:44 final size:44
Alignment explanation
Indices: 94504--94645 Score: 140
Period size: 44 Copynumber: 3.2 Consensus size: 44
94494 TTATAACATT
* *** *
94504 TCACATAGCTTGTATCACATAGAAAAATAATCACATAGATCATG
1 TCACATAGCTTATATCACATATTCAAATAATCACATAGATCATA
* * * *
94548 TCACATAGCTTATATCACATATTCATATAATCACGTAGTTAAGTA
1 TCACATAGCTTATATCACATATTCAAATAATCACATAGATCA-TA
* * ** * *
94593 TCACATAACTTATATCACATTTTCGCATAATCCCATAGACCATA
1 TCACATAGCTTATATCACATATTCAAATAATCACATAGATCATA
94637 TCACATAGC
1 TCACATAGC
94646 ATGAAATATA
Statistics
Matches: 78, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 44 0.56
45 34 0.44
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (44 bp):
TCACATAGCTTATATCACATATTCAAATAATCACATAGATCATA
Found at i:102207 original size:20 final size:20
Alignment explanation
Indices: 102101--102429 Score: 207
Period size: 20 Copynumber: 16.2 Consensus size: 20
102091 GATTTTCAAG
** *
102101 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
* **
102121 AATTGCAACGCGAA-CATATA
1 AATCGCAACGCGAATC-CGTA
* *
102141 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCCGTA
* *
102160 CTATCGCAACGCGTATCCGTAAA
1 -AATCGCAACGCGAATCCGT--A
*
102183 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
102203 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
**
102224 AATCGCAACGCGTGTCCGTA
1 AATCGCAACGCGAATCCGTA
** *
102244 AATCGCAACAAGAATACGTA
1 AATCGCAACGCGAATCCGTA
* *
102264 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCCGTA
* * * *
102283 TTATCGCAATGGGAATACGTA
1 -AATCGCAACGCGAATCCGTA
* * * *
102304 AATCGTAATGCGTATCTGTA
1 AATCGCAACGCGAATCCGTA
* * *
102324 ATTCGCAACGAGAATACGTAA
1 AATCGCAACGCGAATCCGT-A
* *
102345 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
*
102365 AATCGCAACGAGAATCCGTA
1 AATCGCAACGCGAATCCGTA
* ** *
102385 AATCGCAATGATAATCAGTA
1 AATCGCAACGCGAATCCGTA
* *
102405 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
102425 AATCG
1 AATCG
102430 TAACACTGAA
Statistics
Matches: 241, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
19 2 0.01
20 185 0.77
21 35 0.15
22 18 0.07
23 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:102242 original size:41 final size:40
Alignment explanation
Indices: 102101--102429 Score: 265
Period size: 40 Copynumber: 8.1 Consensus size: 40
102091 GATTTTCAAG
* * * * * * **
102101 AATCGCAACGCGAATATGAAAATTGCAACGCGAACATATA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
* * * *
102141 AATCGCAACGCG-ATTCTG-ACTATCGCAACGCGTATCCGTAAA
1 AATCGCAACGCGTA-TCTGTA-AATCGCAACGAGAATACGT--A
* *
102183 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
* * *
102224 AATCGCAACGCGTGTCCGTAAATCGCAACAAGAATACGTA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
* * *
102264 AATCGCAACGCG-ATTCTG-ATTATCGCAATGGGAATACGTA
1 AATCGCAACGCGTA-TCTGTA-AATCGCAACGAGAATACGTA
* * *
102304 AATCGTAATGCGTATCTGTAATTCGCAACGAGAATACGTAA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
* * *
102345 AATCGCAACGAGAATCTGTAAATCGCAACGAGAATCCGTA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
* * *
102385 AATCGCAATG-ATAATCAGTAAATCGCAACGAGAAT-CTGTA
1 AATCGCAACGCGT-ATCTGTAAATCGCAACGAGAATAC-GTA
102425 AATCG
1 AATCG
102430 TAACACTGAA
Statistics
Matches: 237, Mismatches: 39, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
39 4 0.02
40 127 0.54
41 74 0.31
42 30 0.13
43 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (40 bp):
AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
Found at i:102366 original size:121 final size:122
Alignment explanation
Indices: 102139--102392 Score: 348
Period size: 121 Copynumber: 2.1 Consensus size: 122
102129 CGCGAACATA
* *
102139 TAAATCGCAACGCGATTCTGACTATCGCAACGCGTATCCGTAAAAATCGCAACGCGTATCCGTAA
1 TAAATCGCAACGCGATTCTGACTATCGCAACGCGAATACGT-AAAATCGCAACGCGTATCCGTAA
* **
102204 ATCGCAACGACAATACGTAAAATCGCAACGCGTGTCCGTAAATCGCAACAAGAATACG
65 ATCGCAACGACAATACGTAAAATCGCAACGAGAATCCGTAAATCGCAACAAGAATACG
* * * * * * *
102262 TAAATCGCAACGCGATTCTGATTATCGCAATGGGAATACGT-AAATCGTAATGCGTATCTGTAAT
1 TAAATCGCAACGCGATTCTGACTATCGCAACGCGAATACGTAAAATCGCAACGCGTATCCGTAAA
* * * *
102326 TCGCAACGAGAATACGTAAAATCGCAACGAGAATCTGTAAATCGCAACGAGAATCCG
66 TCGCAACGACAATACGTAAAATCGCAACGAGAATCCGTAAATCGCAACAAGAATACG
102383 TAAATCGCAA
1 TAAATCGCAA
102393 TGATAATCAG
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 79 0.69
123 36 0.31
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (122 bp):
TAAATCGCAACGCGATTCTGACTATCGCAACGCGAATACGTAAAATCGCAACGCGTATCCGTAAA
TCGCAACGACAATACGTAAAATCGCAACGAGAATCCGTAAATCGCAACAAGAATACG
Found at i:102410 original size:121 final size:121
Alignment explanation
Indices: 102182--102433 Score: 301
Period size: 121 Copynumber: 2.1 Consensus size: 121
102172 GTATCCGTAA
* * **
102182 AAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTGTCCGTAAAT
1 AAATCGTAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGAGAATCCGTAAAT
* * * * * *
102247 CGCAACAAGAATACGTAAATCGCAACGCGATTCTGATTATCGCAATGGGAATAC-GT
66 CGCAACAAGAATACGTAAATCGCAACGAGAATCAGATAATCGCAACGAGAAT-CTGT
* * * * *
102303 AAATCGTAATGCGTATCTGTAATTCGCAACGAGAATACGTAAAATCGCAACGAGAATCTGTAAAT
1 AAATCGTAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGAGAATCCGTAAAT
* * * *
102368 CGCAACGAGAATCCGTAAATCGCAATGATAATCAG-TAAATCGCAACGAGAATCTGT
66 CGCAACAAGAATACGTAAATCGCAACGAGAATCAGAT-AATCGCAACGAGAATCTGT
102424 AAATCGTAAC
1 AAATCGTAAC
102434 ACTGAAATTT
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
120 2 0.02
121 107 0.98
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.21
Consensus pattern (121 bp):
AAATCGTAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGAGAATCCGTAAAT
CGCAACAAGAATACGTAAATCGCAACGAGAATCAGATAATCGCAACGAGAATCTGT
Found at i:102555 original size:22 final size:22
Alignment explanation
Indices: 102530--102586 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
102520 ACTCTCTCCG
102530 ACGACATCCGTTCCTATATCCA
1 ACGACATCCGTTCCTATATCCA
102552 ACGACATCCGTTCCTATATCCA
1 ACGACATCCGTTCCTATATCCA
102574 ACGACATCC-TTCC
1 ACGACATCCGTTCC
102587 CCATCCGACA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 4 0.11
22 31 0.89
ACGTcount: A:0.26, C:0.39, G:0.09, T:0.26
Consensus pattern (22 bp):
ACGACATCCGTTCCTATATCCA
Found at i:105890 original size:33 final size:34
Alignment explanation
Indices: 105851--105927 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 34
105841 CGGAAATTAC
* *
105851 AATCGCAACGAGAGAATCGCAATGCGAA-AAGAA
1 AATCGCAACGAGAAAATCGCAACGCGAATAAGAA
* *
105884 AATCGCAACGTGAAAATCGCAACGCGAATATGAA
1 AATCGCAACGAGAAAATCGCAACGCGAATAAGAA
*
105918 TATCGCAACG
1 AATCGCAACG
105928 CATAAATGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
33 25 0.66
34 13 0.34
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.13
Consensus pattern (34 bp):
AATCGCAACGAGAAAATCGCAACGCGAATAAGAA
Found at i:105900 original size:14 final size:14
Alignment explanation
Indices: 105881--105907 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105871 AATGCGAAAA
105881 GAAAATCGCAACGT
1 GAAAATCGCAACGT
105895 GAAAATCGCAACG
1 GAAAATCGCAACG
105908 CGAATATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.11
Consensus pattern (14 bp):
GAAAATCGCAACGT
Found at i:105994 original size:33 final size:33
Alignment explanation
Indices: 105957--106157 Score: 181
Period size: 33 Copynumber: 5.9 Consensus size: 33
105947 GCGAAATGAA
* *
105957 AATCGCAACGCGAAATGAAAATTGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
*
105990 AATCGCAATGCGAAAAGAAAATCGCAACGA-AGG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGA-G
* * * *
106023 AATCGCAATGCGAAATTAAAATAGCAACGTGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* ** *
106056 AATCGCAACGCGAATATGAGTATCGCAACGCGGAAATG
1 AATCGCAATGCGAA-ATGAAAATCGCAA--C-GAGA-G
*
106094 ACTATCGCAATGCGAAATGAAAATTGCAACGATG-G
1 A--ATCGCAATGCGAAATGAAAATCGCAACGA-GAG
* *
106129 AATCGCAATGTGAAATTAAAATCGCAACG
1 AATCGCAATGCGAAATGAAAATCGCAACG
106158 CGAATTTAGT
Statistics
Matches: 134, Mismatches: 24, Indels: 20
0.75 0.13 0.11
Matches are distributed among these distances:
32 1 0.01
33 92 0.69
34 10 0.07
35 2 0.01
36 3 0.02
37 3 0.02
38 1 0.01
39 10 0.07
40 12 0.09
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:106122 original size:19 final size:19
Alignment explanation
Indices: 105865--106161 Score: 149
Period size: 19 Copynumber: 16.7 Consensus size: 19
105855 GCAACGAGAG
*
105865 AATCGCAATGCGAAAAGAA
1 AATCGCAATGCGAAATGAA
105884 AATCGCAA--CG---TGAA
1 AATCGCAATGCGAAATGAA
*
105898 AATCGCAACGCGAATATGAA
1 AATCGCAATGCGAA-ATGAA
* * * *
105918 TATCGCAACGCATAAATGAC
1 AATCGCAATGC-GAAATGAA
* *
105938 TATCGCATTGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
105957 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
105976 AATTGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
*
105990 AATCGCAATGCGAAAAGAA
1 AATCGCAATGCGAAATGAA
*
106009 AATCGCAA--CG-AA-G-G
1 AATCGCAATGCGAAATGAA
*
106023 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
106042 AATAGCAA--CG---TGAA
1 AATCGCAATGCGAAATGAA
* *
106056 AATCGCAACGCGAATATGAG
1 AATCGCAATGCGAA-ATGAA
* * *
106076 TATCGCAACGCGGAAATGAC
1 AATCGCAATGC-GAAATGAA
*
106096 TATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
106115 AATTGCAA--CG--ATG-G
1 AATCGCAATGCGAAATGAA
* *
106129 AATCGCAATGTGAAATTAA
1 AATCGCAATGCGAAATGAA
*
106148 AATCGCAACGCGAA
1 AATCGCAATGCGAA
106162 TTTAGTTTTG
Statistics
Matches: 214, Mismatches: 35, Indels: 58
0.70 0.11 0.19
Matches are distributed among these distances:
14 45 0.21
15 5 0.02
16 11 0.05
17 12 0.06
18 3 0.01
19 79 0.37
20 54 0.25
21 5 0.02
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.16
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:106161 original size:158 final size:158
Alignment explanation
Indices: 105832--106124 Score: 444
Period size: 158 Copynumber: 1.8 Consensus size: 158
105822 CTTAATGACT
** * *
105832 ATCGCAACGCGGAAATTACAATCGCAACGAGAGAATCGCAATGCGAAAAGAAAATCGCAACGTGA
1 ATCGCAACGC-GAAAAGAAAATCGCAACGAGAGAATCGCAATGCGAAAAGAAAATAGCAACGTGA
* *
105897 AAATCGCAACGCGAATATGAATATCGCAACGCATAAATGACTATCGCATTGCGAAATGAAAATCG
65 AAATCGCAACGCGAATATGAATATCGCAACGCAGAAATGACTATCGCAATGCGAAATGAAAATCG
*
105962 CAACGCGAAATGAAAATTGCAACGAGAGA
130 CAACGCGAAATGAAAATTGAAACGAGAGA
* **
105991 ATCGCAATGCGAAAAGAAAATCGCAACGA-AGGAATCGCAATGCGAAATTAAAATAGCAACGTGA
1 ATCGCAACGCGAAAAGAAAATCGCAACGAGA-GAATCGCAATGCGAAAAGAAAATAGCAACGTGA
* * *
106055 AAATCGCAACGCGAATATGAGTATCGCAACGCGGAAATGACTATCGCAATGCGAAATGAAAATTG
65 AAATCGCAACGCGAATATGAATATCGCAACGCAGAAATGACTATCGCAATGCGAAATGAAAATCG
106120 CAACG
130 CAACG
106125 ATGGAATCGC
Statistics
Matches: 121, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
157 1 0.01
158 111 0.92
159 9 0.07
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.15
Consensus pattern (158 bp):
ATCGCAACGCGAAAAGAAAATCGCAACGAGAGAATCGCAATGCGAAAAGAAAATAGCAACGTGAA
AATCGCAACGCGAATATGAATATCGCAACGCAGAAATGACTATCGCAATGCGAAATGAAAATCGC
AACGCGAAATGAAAATTGAAACGAGAGA
Found at i:106222 original size:33 final size:33
Alignment explanation
Indices: 106174--106242 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
106164 TAGTTTTGCG
* * * *
106174 TTGCGATTTTGTCGTTGTGATTTTCGTTTCGCA
1 TTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
106207 TTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
106240 TTG
1 TTG
106243 TGATAGTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.10, C:0.19, G:0.22, T:0.49
Consensus pattern (33 bp):
TTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:106372 original size:14 final size:14
Alignment explanation
Indices: 106353--106389 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
106343 CATCAATTAA
106353 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
106367 ACAAATCATCTTTT
1 ACAAATCAACTTTT
106381 ACAAATCAA
1 ACAAATCAA
106390 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:108256 original size:19 final size:19
Alignment explanation
Indices: 108215--108285 Score: 97
Period size: 19 Copynumber: 3.6 Consensus size: 19
108205 AAAAATGACT
*
108215 ATCGCAACGACAGAATCGAAA
1 ATCGCAACG-C-GAAACGAAA
* *
108236 ATCGTAACGCGAAATGAAA
1 ATCGCAACGCGAAACGAAA
108255 ATCGCAACGCGAAACGAAA
1 ATCGCAACGCGAAACGAAA
108274 ATCGCAACGCGA
1 ATCGCAACGCGA
108286 TTATAGTTTC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
19 36 0.80
20 1 0.02
21 8 0.18
ACGTcount: A:0.45, C:0.24, G:0.21, T:0.10
Consensus pattern (19 bp):
ATCGCAACGCGAAACGAAA
Found at i:108304 original size:19 final size:20
Alignment explanation
Indices: 108290--108383 Score: 102
Period size: 19 Copynumber: 4.8 Consensus size: 20
108280 ACGCGATTAT
108290 AGTTTCGCGTTGCGATTTT-
1 AGTTTCGCGTTGCGATTTTC
*
108309 GGTTTCGCGTTGCGATTTTC
1 AGTTTCGCGTTGCGATTTTC
**
108329 A-TTTCGCGTTGCGATAGTC
1 AGTTTCGCGTTGCGATTTTC
* * *
108348 ATTTTTCACGTTGCGATTTTA
1 A-GTTTCGCGTTGCGATTTTC
*
108369 AGTTTCGTGTTGCGA
1 AGTTTCGCGTTGCGA
108384 AAGTAAACTA
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
19 35 0.57
20 11 0.18
21 15 0.25
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.45
Consensus pattern (20 bp):
AGTTTCGCGTTGCGATTTTC
Found at i:108692 original size:94 final size:93
Alignment explanation
Indices: 108431--108713 Score: 437
Period size: 94 Copynumber: 3.1 Consensus size: 93
108421 ATGGATTGCA
* *
108431 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGTT
1 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
* *
108496 TAGCAGAATTAGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAATAAAT
*
108524 TTACTTCCAACCAAAAGACAAAACAAAGAC--ATACT-ATTTCACAGTGTTAAAGAATACACAGT
1 TTACTT-CAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
108586 TTAGCAGAATTGGCAGCAACCGAATAAAT
65 TTAGCAGAATTGGCAGCAACCGAATAAAT
* *
108615 TTACTTCAACCAAAAGGCAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAGT
1 TTACTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
* * *
108680 TTAGCAGTATTGGCAGTAACCAAATAAAT
65 TTAGCAGAATTGGCAGCAACCGAATAAAT
108709 TTACT
1 TTACT
108714 AAGCAATCTA
Statistics
Matches: 174, Mismatches: 11, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
90 16 0.09
91 63 0.36
92 5 0.03
93 11 0.06
94 79 0.45
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAATAAAT
Found at i:110508 original size:19 final size:19
Alignment explanation
Indices: 110398--110511 Score: 122
Period size: 20 Copynumber: 5.8 Consensus size: 19
110388 TCTTTTGGTT
110398 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
**
110417 GAGAATGACTATCGCAACGCA
1 GA-AATGAAAATCGCAACG-A
* * * *
110438 TAAATGTAAATAGCAACGCG
1 GAAATGAAAATCGCAACG-A
*
110458 GAAATGAAAATCACAAC-A
1 GAAATGAAAATCGCAACGA
110476 CGAAATGAAAATCGCAACGA
1 -GAAATGAAAATCGCAACGA
110496 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
110512 TGCGATTTTG
Statistics
Matches: 77, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
19 34 0.44
20 41 0.53
21 2 0.03
ACGTcount: A:0.50, C:0.18, G:0.19, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:110554 original size:21 final size:21
Alignment explanation
Indices: 110528--110599 Score: 101
Period size: 21 Copynumber: 3.5 Consensus size: 21
110518 TTTGGTTTCG
*
110528 CGTTGCGATTTTAATTTCTCT
1 CGTTGCGATTTTCATTTCTCT
** *
110549 CGTTGCGATAGTCATTT-TCG
1 CGTTGCGATTTTCATTTCTCT
110569 CGTTGCGATTTTCATTTCTCT
1 CGTTGCGATTTTCATTTCTCT
110590 CGTTGCGATT
1 CGTTGCGATT
110600 CTTCTACAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 17 0.40
21 26 0.60
ACGTcount: A:0.12, C:0.21, G:0.19, T:0.47
Consensus pattern (21 bp):
CGTTGCGATTTTCATTTCTCT
Found at i:111196 original size:41 final size:41
Alignment explanation
Indices: 111136--111247 Score: 161
Period size: 41 Copynumber: 2.7 Consensus size: 41
111126 TTAAAAATCA
* * **
111136 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATCCT
111177 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATCCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATCCT
* *
111218 CGTTGCGATTTTACGGATCCTCGTTGCGAT
1 CGTTGCGA-TTTACGGATACGCGTTGCGAT
111248 AATCAGAATC
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
41 45 0.70
42 19 0.30
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.37
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATCCT
Found at i:111263 original size:41 final size:39
Alignment explanation
Indices: 111177--111431 Score: 133
Period size: 40 Copynumber: 6.3 Consensus size: 39
111167 TACGTATTGT
* * * * *
111177 CGTTGCGA-TTTACGGATACGCGTTGCGATTTTACGGATCCT
1 CGTTGCGATTTTACGGATTCTCGTTGCGA-TTCA-GAAT-CG
*
111218 CGTTGCGATTTTACGGATCCTCGTTGCGATAATCAGAATCG
1 CGTTGCGATTTTACGGATTCTCGTTGCGAT--TCAGAATCG
* * * *
111259 CGTTGCGA-TTTATGTATTCTCGTTGCAATTTACGGACA-CG
1 CGTTGCGATTTTACGGATTCTCGTTGCGA-TT-CAGA-ATCG
* * * * * *
111299 CGTTACGATTTTACGTATTGTCGTTGTGATTTATGGATACG
1 CGTTGCGATTTTACGGATTCTCGTTGCGATTCA-GAAT-CG
* *
111340 CGTTGTGATTTTTACGGATACTCGTTGCGATAGTCAGAATCG
1 CGTTGCGA-TTTTACGGATTCTCGTTGCGAT--TCAGAATCG
* * * *
111382 CGTTGCGATTTATA-TG-TTCGCGTTGCGATTTTCATATTCG
1 CGTTGCGATTT-TACGGATTCTCGTTGCGA--TTCAGAATCG
111422 CGTTGCGATT
1 CGTTGCGATT
111432 CTGGAAAATC
Statistics
Matches: 166, Mismatches: 32, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
39 2 0.01
40 58 0.35
41 48 0.29
42 51 0.31
43 5 0.03
44 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (39 bp):
CGTTGCGATTTTACGGATTCTCGTTGCGATTCAGAATCG
Found at i:111358 original size:22 final size:20
Alignment explanation
Indices: 111136--111366 Score: 83
Period size: 20 Copynumber: 11.2 Consensus size: 20
111126 TTAAAAATCA
* *
111136 CGTTGCGATTTACGAATACG
1 CGTTGTGATTTACGGATACG
* * *
111156 CGTTGCGATTTTACGTAT-TG
1 CGTTGTGA-TTTACGGATACG
*
111176 TCGTTGCGATTTACGGATACG
1 -CGTTGTGATTTACGGATACG
* * *
111197 CGTTGCGATTTTACGGATCCT
1 CGTTGTGA-TTTACGGATACG
* * *
111218 CGTTGCGATTTTACGGATCCT
1 CGTTGTGA-TTTACGGATACG
* * *
111239 CGTTGCGA-TAATCAGA-ATCG
1 CGTTGTGATTTA-CGGATA-CG
* * * * *
111259 CGTTGCGATTTATGTATTCT
1 CGTTGTGATTTACGGATACG
** *
111279 CGTTGCAATTTACGGACACG
1 CGTTGTGATTTACGGATACG
** * *
111299 CGTTACGATTTTACGTAT-TG
1 CGTTGTGA-TTTACGGATACG
*
111319 TCGTTGTGATTTATGGATACG
1 -CGTTGTGATTTACGGATACG
*
111340 CGTTGTGATTTTTACGGATACT
1 CGTTGTGA--TTTACGGATACG
111362 CGTTG
1 CGTTG
111367 CGATAGTCAG
Statistics
Matches: 164, Mismatches: 34, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
19 2 0.01
20 75 0.46
21 72 0.44
22 15 0.09
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
CGTTGTGATTTACGGATACG
Found at i:111402 original size:20 final size:20
Alignment explanation
Indices: 111379--111431 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
111369 ATAGTCAGAA
*
111379 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
111399 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
111419 TCGCGTTGCGATT
1 TCGCGTTGCGATT
111432 CTGGAAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:111420 original size:143 final size:143
Alignment explanation
Indices: 111136--111427 Score: 360
Period size: 143 Copynumber: 2.0 Consensus size: 143
111126 TTAAAAATCA
* * *
111136 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGCGTT
1 CGTTGCAATTTACGAACACGCGTTACGATTTTACGTATTGTCGTTGCGATTTACGGATACGCGTT
* * * * *
111201 GCGATTTTACGGATCCTCGTTGCGATTTTACGGATCCTCGTTGCGATAATCAGAATCGCGTTGCG
66 GCGATTTTACGGATACTCGTTGCGATGTCACGAATCCGCGTTGCGATAATCAGAATCGCGTTGCG
* *
111266 ATTTATGTATTCT
131 ATTTATATATTCG
* * *
111279 CGTTGCAATTTACGGACACGCGTTACGATTTTACGTATTGTCGTTGTGATTTATGGATACGCGTT
1 CGTTGCAATTTACGAACACGCGTTACGATTTTACGTATTGTCGTTGCGATTTACGGATACGCGTT
* * *
111344 GTGATTTTTACGGATACTCGTTGCGATAGTCA-GAAT-CGCGTTGCGATTTAT-ATG-TTCGCGT
66 GCGA-TTTTACGGATACTCGTTGCGAT-GTCACGAATCCGCGTTGCGA-TAATCA-GAATCGCGT
111405 TGCGATTT-TCATATTCG
127 TGCGATTTAT-ATATTCG
111422 CGTTGC
1 CGTTGC
111428 GATTCTGGAA
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
142 1 0.01
143 97 0.76
144 28 0.22
145 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (143 bp):
CGTTGCAATTTACGAACACGCGTTACGATTTTACGTATTGTCGTTGCGATTTACGGATACGCGTT
GCGATTTTACGGATACTCGTTGCGATGTCACGAATCCGCGTTGCGATAATCAGAATCGCGTTGCG
ATTTATATATTCG
Found at i:111530 original size:20 final size:20
Alignment explanation
Indices: 111483--111534 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
111473 TTTCCAGAAT
111483 TGCGTTGCGATTCTGGGAAC
1 TGCGTTGCGATTCTGGGAAC
** *
111503 TGATTTGCGATTCTGGGGA-
1 TGCGTTGCGATTCTGGGAAC
111522 TCGCGTTGCGATT
1 T-GCGTTGCGATT
111535 TTTATTTCGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.13, C:0.17, G:0.35, T:0.35
Consensus pattern (20 bp):
TGCGTTGCGATTCTGGGAAC
Found at i:111952 original size:58 final size:59
Alignment explanation
Indices: 111815--111981 Score: 176
Period size: 60 Copynumber: 2.8 Consensus size: 59
111805 CATCTCTTTT
* * * * * * * *
111815 TAAATTGGTCTCTAAATTTTTAAATATTTCATTTTCATCCCTAGACTATGACTATCATTT
1 TAAATTGGTCCCCAAACTTTTGAACATTTCAATTTCATCCC-AAACTATGACTATCATTC
** * *
111875 TAAATTAATCCTCACACTTTTGAACATTTCAATTTCA-CCCAAACTATGACCT-TCATTC
1 TAAATTGGTCCCCAAACTTTTGAACATTTCAATTTCATCCCAAACTATGA-CTATCATTC
*
111933 TAAATTGGTCCCCAAACTTTTTGAACATTCCAATTTCATCCCAAACTAT
1 TAAATTGGTCCCCAAAC-TTTTGAACATTTCAATTTCATCCCAAACTAT
111982 ACATATATAC
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
58 26 0.30
59 24 0.28
60 37 0.43
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (59 bp):
TAAATTGGTCCCCAAACTTTTGAACATTTCAATTTCATCCCAAACTATGACTATCATTC
Found at i:112245 original size:46 final size:46
Alignment explanation
Indices: 112170--112259 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
112160 TGTTTAGGGA
* * *
112170 TGAAATTAAAATATTCAAAAGTTTAAGGACTAATTTATAATGAGAG
1 TGAAATTAAAATATTCAAAAGTTTAAGGACCAATTCAAAATGAGAG
* * *
112216 TGAAATTAGAATATTCAAAATTTTGAGGACCAATTCAAAATGAG
1 TGAAATTAAAATATTCAAAAGTTTAAGGACCAATTCAAAATGAG
112260 GGTTATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.31
Consensus pattern (46 bp):
TGAAATTAAAATATTCAAAAGTTTAAGGACCAATTCAAAATGAGAG
Found at i:114591 original size:16 final size:16
Alignment explanation
Indices: 114569--114623 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
114559 GGTATTACCC
114569 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
*
114585 TACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
* * *
114601 GAACTGTTTTTAACAT
1 GACCTGTTTTCAACCT
114617 GACCTGT
1 GACCTGT
114624 AAATGATCCG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:114831 original size:23 final size:25
Alignment explanation
Indices: 114800--114858 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
114790 AAATAGACCT
* *
114800 ATTATATAAAATTATTTTAAT-AAA
1 ATTAGATAAAATTATTTAAATGAAA
*
114824 ATTA-ATAAAATTATTTAAATGTAA
1 ATTAGATAAAATTATTTAAATGAAA
114848 ATTAGATAAAA
1 ATTAGATAAAA
114859 CATTATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 15 0.48
24 10 0.32
25 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (25 bp):
ATTAGATAAAATTATTTAAATGAAA
Found at i:114903 original size:14 final size:14
Alignment explanation
Indices: 114881--114927 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
114871 TGCAAAGGAA
*
114881 AATTAATATAGTTT
1 AATTTATATAGTTT
114895 AATTTATATA----
1 AATTTATATAGTTT
114905 AA-TTATATAGTTT
1 AATTTATATAGTTT
114918 AATTTATATA
1 AATTTATATA
114928 AAGAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:114914 original size:23 final size:24
Alignment explanation
Indices: 114880--114929 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
114870 ATGCAAAGGA
114880 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
114904 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
114927 AAA
1 AAA
114930 GAAAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:115504 original size:17 final size:17
Alignment explanation
Indices: 115482--115525 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
115472 AAAATACAAG
115482 GCAACAACAGGCAGCAA
1 GCAACAACAGGCAGCAA
* * *
115499 GCAACAAGAAGCAGCAG
1 GCAACAACAGGCAGCAA
*
115516 GCATCAACAG
1 GCAACAACAG
115526 TAATAGAAGG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.27, G:0.25, T:0.02
Consensus pattern (17 bp):
GCAACAACAGGCAGCAA
Found at i:118216 original size:102 final size:102
Alignment explanation
Indices: 118040--118251 Score: 397
Period size: 102 Copynumber: 2.1 Consensus size: 102
118030 AATGAATAAC
*
118040 CAACAGTAGCTACAAATTAAACAGTTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAA
1 CAACAGTAGCTACAAATTAAACAATTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAA
*
118105 AAGTAATCCGAATGAACAACCAACAACACAAACAAAT
66 AAGCAATCCGAATGAACAACCAACAACACAAACAAAT
*
118142 CAACAGTAGCTACAAATTAAACAATTTATTTAAACTGTAAATAAAGGTAGCTAACAACCTTATAA
1 CAACAGTAGCTACAAATTAAACAATTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAA
118207 AAGCAATCCGAATGAACAACCAACAACACAAACAAAT
66 AAGCAATCCGAATGAACAACCAACAACACAAACAAAT
118244 CAACAGTA
1 CAACAGTA
118252 TAAACATATT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 107 1.00
ACGTcount: A:0.50, C:0.20, G:0.09, T:0.20
Consensus pattern (102 bp):
CAACAGTAGCTACAAATTAAACAATTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAA
AAGCAATCCGAATGAACAACCAACAACACAAACAAAT
Found at i:118549 original size:6 final size:6
Alignment explanation
Indices: 118540--118778 Score: 108
Period size: 6 Copynumber: 40.3 Consensus size: 6
118530 CATGTTTGAA
** * * *
118540 TTTGGG TTTGAA TTTGGG TTAGGG TTTGGG TTAGGG TTTGGG TTAGGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG
** * ** * * *
118588 TTTGGG TTTGAA TTCGGG -TTCAG TTCGGG TTCGGG TTTGGG -TTAGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG
* ** * * * * * **
118634 TTCGGG TTCAGT TTTTGG TTAGGG TTTGAG TTAGGG TTTGAT TTTGGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG
** * * * * * *
118682 -TTCAG TTAGGG GTTGGG TTTGGA TTTTGG TTTGGG -TTAGG TTTTGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG
* * * ** *
118728 TTAGGG GTTGGG TTTGAG TTCAGG TTTGGG TTTTGG TTTAGGG TTTGGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTT-GGG TTTGGG
118777 TT
1 TT
118779 CAAGTTAGGG
Statistics
Matches: 160, Mismatches: 68, Indels: 10
0.67 0.29 0.04
Matches are distributed among these distances:
5 13 0.08
6 142 0.89
7 5 0.03
ACGTcount: A:0.09, C:0.03, G:0.42, T:0.46
Consensus pattern (6 bp):
TTTGGG
Found at i:118616 original size:11 final size:11
Alignment explanation
Indices: 118600--118646 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
118590 TGGGTTTGAA
118600 TTCGGGTTCAG
1 TTCGGGTTCAG
*
118611 TTCGGGTTCGGG
1 TTCGGGTTC-AG
*
118623 TTTGGGTT-AGG
1 TTCGGGTTCA-G
118634 TTCGGGTTCAG
1 TTCGGGTTCAG
118645 TT
1 TT
118647 TTTGGTTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.06, C:0.13, G:0.40, T:0.40
Consensus pattern (11 bp):
TTCGGGTTCAG
Found at i:118653 original size:23 final size:23
Alignment explanation
Indices: 118552--118656 Score: 72
Period size: 23 Copynumber: 4.5 Consensus size: 23
118542 TGGGTTTGAA
*
118552 TTTGGGTTAGGGTTTGGGTT-AGGG
1 TTTGGGTTA-GGTTCGGGTTCA-GG
* * *
118576 TTTGGGTTAGGGTTTGGGTT-TGAA
1 TTTGGGTTA-GGTTCGGGTTCAG-G
* *
118600 TTCGGGTTCA-GTTCGGGTTCGGG
1 TTTGGGTT-AGGTTCGGGTTCAGG
*
118623 TTTGGGTTAGGTTCGGGTTCAGT
1 TTTGGGTTAGGTTCGGGTTCAGG
*
118646 TTTTGGTTAGG
1 TTTGGGTTAGG
118657 GTTTGAGTTA
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
22 1 0.01
23 37 0.55
24 28 0.42
25 1 0.01
ACGTcount: A:0.09, C:0.06, G:0.43, T:0.43
Consensus pattern (23 bp):
TTTGGGTTAGGTTCGGGTTCAGG
Found at i:118700 original size:41 final size:40
Alignment explanation
Indices: 118650--118755 Score: 104
Period size: 41 Copynumber: 2.5 Consensus size: 40
118640 TTCAGTTTTT
* *
118650 GGTTAGGGTTTGAGTTAGGGTTTGATTTTGGGTTCAGTTAGG
1 GGTT-GGGTTTGAGTTA-GGTTTGAGTTAGGGTTCAGTTAGG
* * * * **
118692 GGTTGGGTTTGGATTTTGGTTTGGGTTAGGTTTTGGTTAGG
1 GGTTGGGTTT-GAGTTAGGTTTGAGTTAGGGTTCAGTTAGG
118733 GGTTGGGTTTGAGTTCAGGTTTG
1 GGTTGGGTTTGAGTT-AGGTTTG
118756 GGTTTTGGTT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
40 4 0.08
41 40 0.77
42 8 0.15
ACGTcount: A:0.10, C:0.02, G:0.42, T:0.45
Consensus pattern (40 bp):
GGTTGGGTTTGAGTTAGGTTTGAGTTAGGGTTCAGTTAGG
Found at i:119441 original size:28 final size:26
Alignment explanation
Indices: 119398--119482 Score: 88
Period size: 28 Copynumber: 3.2 Consensus size: 26
119388 TATATAATTT
119398 TTAT-TAATTAACTATTTATAATTAAA
1 TTATATAATTAA-TATTTATAATTAAA
119424 TTATAGTAATT-ATATATTATAATTATAA
1 TTATA-TAATTAATAT-TTATAATTA-AA
*
119452 TTAATATAATTAATATTAAT-A-TAAA
1 TT-ATATAATTAATATTTATAATTAAA
119477 TTATAT
1 TTATAT
119483 GTTATAAATT
Statistics
Matches: 52, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
24 4 0.08
25 4 0.08
26 9 0.17
27 11 0.21
28 17 0.33
29 7 0.13
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
TTATATAATTAATATTTATAATTAAA
Found at i:119444 original size:7 final size:7
Alignment explanation
Indices: 119432--119509 Score: 54
Period size: 7 Copynumber: 10.9 Consensus size: 7
119422 AATTATAGTA
119432 ATTATAT
1 ATTATAT
119439 ATTATA-
1 ATTATAT
119445 ATTATA-
1 ATTATAT
119451 ATTAATAT
1 ATT-ATAT
119459 AATTA-AT
1 -ATTATAT
119466 ATTAATAT
1 ATT-ATAT
119474 AAATTATAT
1 --ATTATAT
* *
119483 GTTATAA
1 ATTATAT
119490 ATTATAT
1 ATTATAT
*
119497 AGTATAT
1 ATTATAT
*
119504 TTTATA
1 ATTATA
119510 AACTATAGTT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
6 12 0.21
7 32 0.56
8 3 0.05
9 7 0.12
10 3 0.05
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (7 bp):
ATTATAT
Done.