Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000171.1 Hibiscus syriacus cultivar Beakdansim tig00000300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63674

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4131--4181
10
4.7
10
74
25
50
23
37
27
11
1.90
4165--4252
33
2.6
34
84
7
110
27
26
36
10
1.88
4256--4310
29
1.9
28
85
3
74
20
30
34
14
1.92
4388--4444
29
2.0
29
92
0
96
21
29
33
15
1.94
5441--5573
58
2.2
60
83
9
157
30
14
15
39
1.87
11081--11119
17
2.3
17
81
0
51
56
0
35
7
1.28
15367--15406
20
2.0
20
85
9
55
25
5
10
60
1.49
15436--15485
20
2.4
21
86
3
75
24
14
14
48
1.80
18259--18308
20
2.5
20
100
0
100
32
10
4
54
1.52
20673--20718
19
2.3
20
88
3
67
32
8
10
47
1.69
21492--21594
32
3.2
32
91
2
163
39
34
9
15
1.80
24597--24633
18
2.1
18
89
0
56
27
0
0
72
0.84
24853--24895
19
2.1
21
83
8
54
58
0
4
37
1.19
27217--27447
45
5.1
44
78
9
189
35
9
15
39
1.80
27217--27447
91
2.5
91
80
6
238
35
9
15
39
1.80
32864--33589
58
12.4
58
75
8
490
36
6
10
45
1.66
32864--33626
174
4.3
175
73
10
583
36
6
10
45
1.66
36951--37019
30
2.2
30
85
15
95
34
5
17
42
1.73
36960--37019
30
2.0
30
93
6
104
33
6
16
43
1.74
37101--37197
21
4.7
20
80
11
106
22
35
18
23
1.96
37218--37291
20
3.7
19
77
10
76
21
25
21
31
1.98
40515--40583
30
2.2
30
82
15
86
36
4
17
42
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40524--40583
29
2.0
30
90
6
95
35
5
16
43
1.70
40663--40761
21
4.8
20
79
13
101
24
34
20
21
1.97
40663--40761
42
2.4
42
83
6
121
24
34
20
21
1.97
40782--40855
20
3.7
19
77
10
76
20
25
24
29
1.99
42177--42219
15
2.8
16
76
16
54
58
4
2
34
1.32
42667--42709
20
2.2
20
86
0
59
67
11
4
16
1.38
42748--42825
40
2.0
40
82
5
95
37
11
10
41
1.75
43952--43985
15
2.3
15
94
0
59
55
0
0
44
0.99
47853--47902
3
16.7
3
91
0
82
28
0
2
70
0.99
48990--49034
2
23.0
2
95
4
83
48
0
0
51
1.00
49359--49401
19
2.2
20
84
8
54
34
4
2
58
1.32
49973--50014
21
2.0
21
86
9
59
26
0
0
73
0.83
49972--50005
15
2.2
15
89
5
50
26
0
0
73
0.83
53282--53313
16
2.0
16
100
0
64
25
18
25
31
1.98
53385--53469
25
3.5
24
70
10
84
68
9
3
18
1.32
53389--53555
43
3.8
44
91
4
273
67
8
3
20
1.34
53393--53555
90
1.8
87
94
3
290
66
9
3
20
1.35
53959--54040
21
3.9
21
80
6
94
24
10
35
29
1.90
59824--59865
20
2.1
20
95
0
75
30
7
19
42
1.78
61685--61720
18
2.0
18
100
0
72
38
11
27
22
1.88
63379--63442
12
5.4
12
71
3
58
53
17
14
15
1.74

Tables:   1

The End!