Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001711.1 Hibiscus syriacus cultivar Beakdansim tig00003454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4148933
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 13
Found at i:2588964 original size:14 final size:14
Alignment explanation
Indices: 2588945--2588974 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
2588935 TTCTTAACTA
2588945 TAGGTAAAACCTAC
1 TAGGTAAAACCTAC
2588959 TAGGTAAAACCTAC
1 TAGGTAAAACCTAC
2588973 TA
1 TA
2588975 ACACTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.23
Consensus pattern (14 bp):
TAGGTAAAACCTAC
Found at i:2592852 original size:22 final size:22
Alignment explanation
Indices: 2592824--2592873 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
2592814 TTGTCTCTCC
*
2592824 CAGTGTAAAAACACTTTTGTAT
1 CAGTGTAAAAACAATTTTGTAT
**
2592846 CAGTGTAAATGCAATTTTGTAT
1 CAGTGTAAAAACAATTTTGTAT
*
2592868 TAGTGT
1 CAGTGT
2592874 TGAGGTACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (22 bp):
CAGTGTAAAAACAATTTTGTAT
Found at i:2596234 original size:18 final size:18
Alignment explanation
Indices: 2596205--2596255 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
2596195 TGAATATTTC
*
2596205 TCCCGAATGACCACTATG
1 TCCCGAAGGACCACTATG
**
2596223 TTTCGAAGGACCACTATG
1 TCCCGAAGGACCACTATG
2596241 TCCCGAAGGACCACT
1 TCCCGAAGGACCACT
2596256 GATAATCCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (18 bp):
TCCCGAAGGACCACTATG
Found at i:2596514 original size:2 final size:2
Alignment explanation
Indices: 2596509--2596534 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2596499 GTTAACACAC
2596509 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2596535 GCATGAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2596819 original size:20 final size:20
Alignment explanation
Indices: 2596796--2596849 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
2596786 TTAATGAAGG
*
2596796 TATGCATCGATGCACTACAC
1 TATGTATCGATGCACTACAC
2596816 TATGTATCGATGCACTACAC
1 TATGTATCGATGCACTACAC
2596836 TATGTATCGATGCA
1 TATGTATCGATGCA
2596850 TCCCTTGACG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (20 bp):
TATGTATCGATGCACTACAC
Found at i:2603196 original size:18 final size:18
Alignment explanation
Indices: 2603173--2603216 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
2603163 TATTTCTCCT
2603173 GAAGGACCGCTATGTCCC
1 GAAGGACCGCTATGTCCC
2603191 GAAGGACCGCTATGTCCC
1 GAAGGACCGCTATGTCCC
2603209 GAAGGACC
1 GAAGGACC
2603217 ACTGATAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.25, C:0.32, G:0.30, T:0.14
Consensus pattern (18 bp):
GAAGGACCGCTATGTCCC
Found at i:2603892 original size:63 final size:65
Alignment explanation
Indices: 2603784--2603945 Score: 163
Period size: 63 Copynumber: 2.5 Consensus size: 65
2603774 ATCCCTTGAC
*
2603784 GGGTGCATCGATGCACTA-TCTATGCATC-AGTACA-TAAATCCCATTCGATGTTTCTATTTT-A
1 GGGTGCATCGATGCACTACT-TATGCATCGA-TACACTAAATCCCATTCAATGTTTCTATTTTAA
2603845 AG
64 AG
* ** *
2603847 GGGTGCATCGATGCACTACTTATGCATCGATACACT-GATGGCATTCAATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTACTTATGCATCGATACACTAAATCCCATTCAATGTTTCTATTTTAAAG
* * ** * * *
2603911 GAGTGCTTCGATATACTTCGTGTGCATCGATACAC
1 GGGTGCATCGATGCACTACTTATGCATCGATACAC
2603946 CTTGAATAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
63 49 0.59
64 34 0.41
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (65 bp):
GGGTGCATCGATGCACTACTTATGCATCGATACACTAAATCCCATTCAATGTTTCTATTTTAAAG
Found at i:2606395 original size:41 final size:41
Alignment explanation
Indices: 2606349--2606432 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
2606339 CACCCAAATG
2606349 CTTCATATACTCATATAAGAAAAAACACTAGTCATGTTGAT
1 CTTCATATACTCATATAAGAAAAAACACTAGTCATGTTGAT
2606390 CTTCATATACTCATATAAGAAAAAACACTAGTCATGTTGAT
1 CTTCATATACTCATATAAGAAAAAACACTAGTCATGTTGAT
2606431 CT
1 CT
2606433 GCAAGTGGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (41 bp):
CTTCATATACTCATATAAGAAAAAACACTAGTCATGTTGAT
Found at i:2609887 original size:30 final size:30
Alignment explanation
Indices: 2609853--2609968 Score: 137
Period size: 30 Copynumber: 3.9 Consensus size: 30
2609843 TTAATTCCCT
* * * *
2609853 ATCTTTATTTTTGTTTATTTATATTTTAGC
1 ATCTTTATTTCTCTTTATTTATATTTCAAC
*
2609883 ATCTTTATTTTTCTTTATTTATATTTCAAC
1 ATCTTTATTTCTCTTTATTTATATTTCAAC
* *
2609913 ATCTTTATTTCCCTTTATTTACATTTCAAC
1 ATCTTTATTTCTCTTTATTTATATTTCAAC
*
2609943 A-CTTTAATTTCT-GTTATTTATATTTC
1 ATCTTT-ATTTCTCTTTATTTATATTTC
2609969 TGCCCATTTA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
29 16 0.21
30 60 0.79
ACGTcount: A:0.22, C:0.14, G:0.03, T:0.61
Consensus pattern (30 bp):
ATCTTTATTTCTCTTTATTTATATTTCAAC
Found at i:2609990 original size:30 final size:30
Alignment explanation
Indices: 2609945--2610024 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
2609935 ATTTCAACAC
*
2609945 TTTAATTTCTGTTATTTATATTTCTGCCCA
1 TTTAATTTCTGTTATTTATATTTATGCCCA
* * * *
2609975 TTTACTTTCTATTATTTATATTTATTCCCT
1 TTTAATTTCTGTTATTTATATTTATGCCCA
2610005 TTTAATTT-TGTTATTTATAT
1 TTTAATTTCTGTTATTTATAT
2610025 GTTTCCCTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 11 0.26
30 32 0.74
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.62
Consensus pattern (30 bp):
TTTAATTTCTGTTATTTATATTTATGCCCA
Found at i:2610651 original size:3 final size:3
Alignment explanation
Indices: 2610643--2610710 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
2610633 CATGTCTCAT
2610643 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
2610691 TTA TTA TTA TTA TCA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
2610711 CAATTATTCT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:2611111 original size:16 final size:16
Alignment explanation
Indices: 2611075--2611112 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2611065 ATAGACCAAT
2611075 TTTTTTCTTTAAAATG
1 TTTTTTCTTTAAAATG
*
2611091 ATTTTTC-TTAAAATTG
1 TTTTTTCTTTAAAA-TG
2611107 TTTTTT
1 TTTTTT
2611113 TAATACGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTTTTCTTTAAAATG
Found at i:2613407 original size:44 final size:43
Alignment explanation
Indices: 2613345--2613432 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 43
2613335 TAATGTTGGA
* * *
2613345 TTTCCAACACTATGTTGGAGTTATTAATAGCTTTCAAACTTAT
1 TTTCCAAAACTATGTTGGAGCTATTAACAGCTTTCAAACTTAT
* *
2613388 TTTCCTAAAACTATGTTGGAGCTATTACCAGCTTTCCAACTTAT
1 TTTCC-AAAACTATGTTGGAGCTATTAACAGCTTTCAAACTTAT
2613432 T
1 T
2613433 CCCTAATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 5 0.13
44 34 0.87
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.41
Consensus pattern (43 bp):
TTTCCAAAACTATGTTGGAGCTATTAACAGCTTTCAAACTTAT
Found at i:2617617 original size:10 final size:10
Alignment explanation
Indices: 2617604--2617641 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
2617594 AAAACCCACT
2617604 AAAAATGAAA
1 AAAAATGAAA
2617614 AAAAATTG--A
1 AAAAA-TGAAA
2617623 AAAAATGAAA
1 AAAAATGAAA
2617633 AAAAATGAA
1 AAAAATGAA
2617642 GTTGTGAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 2 0.08
9 6 0.24
10 15 0.60
11 2 0.08
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (10 bp):
AAAAATGAAA
Found at i:2620689 original size:15 final size:16
Alignment explanation
Indices: 2620651--2620691 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
2620641 CCAGAGCCTC
*
2620651 TGAATCATTCAGCATT
1 TGAATCATTCAGCACT
*
2620667 TGAATCATTCAGCGCT
1 TGAATCATTCAGCACT
2620683 T-AATCATTC
1 TGAATCATTC
2620692 TAAAGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (16 bp):
TGAATCATTCAGCACT
Found at i:2624306 original size:30 final size:30
Alignment explanation
Indices: 2624270--2624330 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
2624260 AAATGTCGAT
2624270 TTTAATATATTTAGGAAAAACCTCAAACAA
1 TTTAATATATTTAGGAAAAACCTCAAACAA
2624300 TTTAATATATTTAGGAAAAACCTCAAACAA
1 TTTAATATATTTAGGAAAAACCTCAAACAA
2624330 T
1 T
2624331 CAGACTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (30 bp):
TTTAATATATTTAGGAAAAACCTCAAACAA
Found at i:2625913 original size:22 final size:21
Alignment explanation
Indices: 2625883--2625923 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
2625873 CATTTTTATT
*
2625883 TCATCATCAACACCTTCAACA
1 TCATCATCAACACCATCAACA
*
2625904 TCATCCATCAAGACCATCAA
1 TCAT-CATCAACACCATCAA
2625924 TTCCGCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.39, C:0.37, G:0.02, T:0.22
Consensus pattern (21 bp):
TCATCATCAACACCATCAACA
Found at i:2627320 original size:15 final size:15
Alignment explanation
Indices: 2627302--2627341 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
2627292 GAAGATGTTG
2627302 GAGTTGAAAATGAGA
1 GAGTTGAAAATGAGA
2627317 GAGTTGAAAATGAGA
1 GAGTTGAAAATGAGA
2627332 GAGTTGAAAA
1 GAGTTGAAAA
2627342 GGATGAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.33, T:0.20
Consensus pattern (15 bp):
GAGTTGAAAATGAGA
Found at i:2635450 original size:17 final size:17
Alignment explanation
Indices: 2635428--2635467 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
2635418 GTTGGATTGT
2635428 TTGTAACTGATATGAGC
1 TTGTAACTGATATGAGC
2635445 TTGTAACTGATATGAGC
1 TTGTAACTGATATGAGC
2635462 TTGTAA
1 TTGTAA
2635468 AATATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.38
Consensus pattern (17 bp):
TTGTAACTGATATGAGC
Found at i:2636307 original size:1 final size:1
Alignment explanation
Indices: 2636301--2636329 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
2636291 CTTAAATGTG
2636301 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2636330 GAGCTTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:2638391 original size:15 final size:15
Alignment explanation
Indices: 2638368--2638397 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2638358 TAATGGGGGG
*
2638368 AGTGCACACAGTGAC
1 AGTGAACACAGTGAC
2638383 AGTGAACACAGTGAC
1 AGTGAACACAGTGAC
2638398 CCACAAAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.23, G:0.27, T:0.13
Consensus pattern (15 bp):
AGTGAACACAGTGAC
Found at i:2639941 original size:15 final size:15
Alignment explanation
Indices: 2639921--2639949 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
2639911 TCTACAAAAA
2639921 AAATATTAATATCTG
1 AAATATTAATATCTG
2639936 AAATATTAATATCT
1 AAATATTAATATCT
2639950 TATATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.41
Consensus pattern (15 bp):
AAATATTAATATCTG
Found at i:2640496 original size:3 final size:3
Alignment explanation
Indices: 2640488--2640550 Score: 92
Period size: 3 Copynumber: 21.0 Consensus size: 3
2640478 CAAAACATTG
*
2640488 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AGT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
2640535 ATT ACT ATT ATGT ATT
1 ATT ATT ATT AT-T ATT
2640551 TATACATTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
2 1 0.02
3 50 0.93
4 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:2641455 original size:15 final size:15
Alignment explanation
Indices: 2641435--2641486 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
2641425 ATATTTAGCT
*
2641435 GGGCGGGCGGATGTG
1 GGGCGGGCGGATGCG
*
2641450 GGGCGGGTGGATGCG
1 GGGCGGGCGGATGCG
2641465 GGGCGGGCGGATGCG
1 GGGCGGGCGGATGCG
2641480 GGGCGGG
1 GGGCGGG
2641487 TAATGTCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.06, C:0.15, G:0.69, T:0.10
Consensus pattern (15 bp):
GGGCGGGCGGATGCG
Found at i:2644191 original size:20 final size:21
Alignment explanation
Indices: 2644168--2644212 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
2644158 ACCGATAAAG
2644168 AACC-GGAAGAACCGGCTGAA
1 AACCGGGAAGAACCGGCTGAA
** *
2644188 AACCGGGGTGAATCGGCTGAA
1 AACCGGGAAGAACCGGCTGAA
2644209 AACC
1 AACC
2644213 AGCAAAACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.36, C:0.24, G:0.31, T:0.09
Consensus pattern (21 bp):
AACCGGGAAGAACCGGCTGAA
Found at i:2645158 original size:21 final size:22
Alignment explanation
Indices: 2645123--2645164 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
2645113 TGACCACTAA
* *
2645123 ACTATTTAGTCTTTTTATTTTT
1 ACTATTTAATCTTTTAATTTTT
2645145 ACTA-TTAATCTTTTAATTTT
1 ACTATTTAATCTTTTAATTTT
2645165 ATCAATCAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (22 bp):
ACTATTTAATCTTTTAATTTTT
Found at i:2651062 original size:22 final size:21
Alignment explanation
Indices: 2651023--2651063 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
2651013 CATATTCAAT
* *
2651023 TAAATAATTTTTATTATATAC
1 TAAATAATTATTAATATATAC
2651044 TAAATAAATTATTAATATAT
1 TAAAT-AATTATTAATATAT
2651064 GAAATTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TAAATAATTATTAATATATAC
Found at i:2657545 original size:23 final size:23
Alignment explanation
Indices: 2657519--2657569 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
2657509 GAGTCGAAGG
2657519 TTCTAAATGGTCCTTCGAGACAA
1 TTCTAAATGGTCCTTCGAGACAA
** *
2657542 TTCTATGTGGTCCTTCGAGACAT
1 TTCTAAATGGTCCTTCGAGACAA
2657565 TTCTA
1 TTCTA
2657570 CGCGGTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (23 bp):
TTCTAAATGGTCCTTCGAGACAA
Found at i:2657576 original size:23 final size:23
Alignment explanation
Indices: 2657527--2657587 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
2657517 GGTTCTAAAT
* * *
2657527 GGTCCTTCGAGACAATTCTATGT
1 GGTCCTTCGAGACATTTCTACGC
2657550 GGTCCTTCGAGACATTTCTACGC
1 GGTCCTTCGAGACATTTCTACGC
* *
2657573 GGTCTTTCGGGACAT
1 GGTCCTTCGAGACAT
2657588 ATATGTGGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.33
Consensus pattern (23 bp):
GGTCCTTCGAGACATTTCTACGC
Found at i:2661157 original size:22 final size:22
Alignment explanation
Indices: 2661132--2661185 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
2661122 TAGTTGAATT
*
2661132 AAATATATTATTTAAAATTTTA
1 AAATATATTAATTAAAATTTTA
* *
2661154 AAATATTTTAATTAAAA-TTTG
1 AAATATATTAATTAAAATTTTA
2661175 AAAT-TATTAAT
1 AAATATATTAAT
2661186 ATCATAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 6 0.21
21 7 0.25
22 15 0.54
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AAATATATTAATTAAAATTTTA
Found at i:2661922 original size:21 final size:20
Alignment explanation
Indices: 2661836--2661993 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
2661826 AAATGACCAA
**
2661836 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
2661855 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
2661875 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
2661895 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
2661916 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
2661937 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
2661957 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
2661978 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
2661994 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:2662022 original size:20 final size:20
Alignment explanation
Indices: 2661960--2662189 Score: 223
Period size: 20 Copynumber: 11.5 Consensus size: 20
2661950 CGATTTTCCA
* ** *
2661960 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
2661980 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
2662000 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
2662020 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
* **
2662040 AAATCGCAACGTGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
2662060 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
2662080 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
2662100 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
2662120 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
2662140 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
2662160 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
2662180 AAATCACAAC
1 AAATCGCAAC
2662190 ACTGAAATTT
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 172 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:2662907 original size:24 final size:24
Alignment explanation
Indices: 2662868--2662914 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2662858 AAATTTGGTC
2662868 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
2662892 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
2662915 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:2663103 original size:12 final size:12
Alignment explanation
Indices: 2663086--2663110 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2663076 TTCATATCCT
2663086 GAAGAAGAAAAA
1 GAAGAAGAAAAA
2663098 GAAGAAGAAAAA
1 GAAGAAGAAAAA
2663110 G
1 G
2663111 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:2665419 original size:33 final size:34
Alignment explanation
Indices: 2665368--2665598 Score: 187
Period size: 33 Copynumber: 6.7 Consensus size: 34
2665358 CGGAAATTAC
*
2665368 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
* *
2665401 AATCCCAAC-ATGAAAATCGCAAACGCGGAAATGAA
1 AATCGCAACGATGAAAATCGC-AATGC-GAAATGAA
*
2665436 AATCGCAACGA-GATAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
2665469 AATCGCAATGCGGAAATGAAAATCGCAA--CG--A-GAT
1 AATCGCAA--C-G--ATGAAAATCGCAATGCGAAATGAA
2665503 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATG-A
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
* *
2665540 AATAGCAACGA-GAGAATCGCAATGCGAAATG-A
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
2665572 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAA--CG--ATGAAAATCGCAA
2665599 CGAGAGAATC
Statistics
Matches: 165, Mismatches: 13, Indels: 36
0.77 0.06 0.17
Matches are distributed among these distances:
32 28 0.17
33 49 0.30
34 23 0.14
35 30 0.18
36 3 0.02
37 20 0.12
38 2 0.01
39 10 0.06
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (34 bp):
AATCGCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:2665474 original size:19 final size:19
Alignment explanation
Indices: 2665382--2665598 Score: 199
Period size: 19 Copynumber: 12.4 Consensus size: 19
2665372 GCAACGAGAG
2665382 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2665401 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
*
2665415 AATCGCAAACGCGGAAATGAA
1 AATCGC-AATGC-GAAATGAA
*
2665436 AATCGCAA--CG--A-GAT
1 AATCGCAATGCGAAATGAA
2665450 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2665469 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
2665489 AATCGCAA--CG--A-GAT
1 AATCGCAATGCGAAATGAA
2665503 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2665522 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
* *
2665540 AATAGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
2665554 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
2665572 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2665591 AATCGCAA
1 AATCGCAA
2665599 CGAGAGAATC
Statistics
Matches: 163, Mismatches: 10, Indels: 50
0.73 0.04 0.22
Matches are distributed among these distances:
13 1 0.01
14 38 0.23
15 4 0.02
16 8 0.05
17 4 0.02
18 30 0.18
19 49 0.30
20 18 0.11
21 11 0.07
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:2665569 original size:51 final size:53
Alignment explanation
Indices: 2665410--2665620 Score: 349
Period size: 51 Copynumber: 4.0 Consensus size: 53
2665400 AAATCCCAAC
* *
2665410 ATGAAAATCGCAAACGCGGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGC-AATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
2665464 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
2665517 ATGAAAATCGCAATGC-GAAATG-AAATAGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
2665568 ATG-AAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
2665619 AT
1 AT
2665621 TATAAACGCA
Statistics
Matches: 152, Mismatches: 4, Indels: 5
0.94 0.02 0.03
Matches are distributed among these distances:
50 18 0.12
51 60 0.39
52 6 0.04
53 57 0.38
54 11 0.07
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (53 bp):
ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:2665739 original size:52 final size:53
Alignment explanation
Indices: 2665627--2665742 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
2665617 AAATTATAAA
2665627 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
2665680 CGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
2665732 CGCATTGCGAT
1 CGCATTGCGAT
2665743 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
Found at i:2665750 original size:19 final size:19
Alignment explanation
Indices: 2665645--2665742 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
2665635 GATTCTCTCG
2665645 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
2665665 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
2665684 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
2665698 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
2665717 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
2665736 TTGCGAT
1 TTGCGAT
2665743 AGTCATTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:2665864 original size:14 final size:13
Alignment explanation
Indices: 2665836--2665893 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 13
2665826 TTATGTTCGC
*
2665836 ATCAATTACACAA
1 ATCAATTATACAA
2665849 ATCAACTTATACAA
1 ATCAA-TTATACAA
* *
2665863 ATCATCTTTTACAA
1 ATCA-ATTATACAA
*
2665877 ATCAATTAAAC-A
1 ATCAATTATACAA
2665889 ATCAA
1 ATCAA
2665894 AAAATAAGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
12 6 0.16
13 9 0.24
14 22 0.59
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
ATCAATTATACAA
Found at i:2667817 original size:14 final size:14
Alignment explanation
Indices: 2667798--2667853 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
2667788 CGCGAAATGA
*
2667798 AATCGCAACGACAG
1 AATCGCAACGAAAG
2667812 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
2667829 AAATCGCAACGAAAG
1 -AATCGCAACGAAAG
2667844 AATCGCAACG
1 AATCGCAACG
2667854 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 18 0.49
15 1 0.03
16 9 0.24
17 1 0.03
18 8 0.22
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:2667825 original size:32 final size:32
Alignment explanation
Indices: 2667780--2667870 Score: 155
Period size: 32 Copynumber: 2.8 Consensus size: 32
2667770 ACGAAACCAA
*
2667780 AATCGCAACGCGAAATGAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAATCGCAACGAAAG
*
2667812 AATCGCAATGCGAAATGAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAATCGCAACGAAAG
2667844 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATG-AAATCGCAA
2667871 TGCGATTTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 46 0.84
33 9 0.16
ACGTcount: A:0.46, C:0.22, G:0.21, T:0.11
Consensus pattern (32 bp):
AATCGCAACGCGAAATGAAATCGCAACGAAAG
Found at i:2667893 original size:19 final size:19
Alignment explanation
Indices: 2667871--2667983 Score: 111
Period size: 19 Copynumber: 6.5 Consensus size: 19
2667861 AAAATCGCAA
2667871 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
2667890 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
2667904 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
2667923 TGCGATTAT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
2667937 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
2667956 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
2667975 TACGATTTT
1 TGCGATTTT
2667984 TAAGTTTCGT
Statistics
Matches: 76, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
14 22 0.29
15 1 0.01
16 2 0.03
17 2 0.03
18 2 0.03
19 47 0.62
ACGTcount: A:0.09, C:0.17, G:0.27, T:0.47
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:2667913 original size:33 final size:33
Alignment explanation
Indices: 2667871--2667962 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
2667861 AAAATCGCAA
2667871 TGCGATTTTGGTTTCGCGTTGCGATCT-TGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGAT-TATGTCGT
2667904 TGCGATTTTGGTTTCGCGTTGCGATTATGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTATGTCGT
**
2667937 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
2667963 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 1 0.02
33 55 0.98
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTATGTCGT
Found at i:2668178 original size:19 final size:20
Alignment explanation
Indices: 2668156--2668207 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
2668146 CTTTTTTTCA
*
2668156 TTTCGCGTTGCGATTTT-GG
1 TTTCGCGTTGCGATTTTAAG
*
2668175 TTTCGCGTTACGATTTTAAG
1 TTTCGCGTTGCGATTTTAAG
*
2668195 TTTCGTGTTGCGA
1 TTTCGCGTTGCGA
2668208 AAGTAAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.12, C:0.15, G:0.27, T:0.46
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTAAG
Found at i:2668502 original size:92 final size:93
Alignment explanation
Indices: 2668256--2668812 Score: 999
Period size: 92 Copynumber: 6.1 Consensus size: 93
2668246 ATGGATTGCA
2668256 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
2668320 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
2668348 TTA-TTTACTTTAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAG---A-AC
1 TTACTTT-C---AACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
2668408 AGTTTAGCAGAATTGGCAGCAACCGAACAAAT
62 AGTTTAGCAGAATTGGCAGCAACCGAACAAAT
2668440 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTG-TAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
2668504 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
2668532 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAG-T
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
2668596 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
2668624 TTACTTTCAACCAAAAGGCAAAACAAAGACAAATACTATTTCACAGTGTTAAAG-A-ACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
2668687 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
2668715 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
2668780 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
2668808 TTACT
1 TTACT
2668813 AAGCAATCTA
Statistics
Matches: 449, Mismatches: 2, Indels: 27
0.94 0.00 0.06
Matches are distributed among these distances:
88 5 0.01
89 40 0.09
90 6 0.01
91 84 0.19
92 208 0.46
93 60 0.13
96 46 0.10
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:2670314 original size:14 final size:14
Alignment explanation
Indices: 2670295--2670384 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
2670285 TTGAAATGAA
2670295 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
2670309 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
2670328 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
2670342 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
2670361 AATCGCAACGAGAG
1 AATCGCAACGAGAG
2670375 AATCGCAACG
1 AATCGCAACG
2670385 CGAAACCAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:2670327 original size:33 final size:33
Alignment explanation
Indices: 2670287--2670389 Score: 206
Period size: 33 Copynumber: 3.1 Consensus size: 33
2670277 TCTTTTGGTT
2670287 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
2670320 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
2670353 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
2670386 GAAA
1 GAAA
2670390 CCAAATCGCA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.47, C:0.20, G:0.24, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:2670333 original size:19 final size:19
Alignment explanation
Indices: 2670309--2670370 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
2670299 GCAACGAGAG
2670309 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
2670328 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
2670342 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
2670361 AATCGCAACG
1 AATCGCAACG
2670371 AGAGAATCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 10 0.28
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 20 0.56
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:2670446 original size:33 final size:34
Alignment explanation
Indices: 2670401--2670535 Score: 143
Period size: 33 Copynumber: 3.9 Consensus size: 34
2670391 CAAATCGCAA
2670401 TGCGATTTCA-TT-TCGCGTTGCGATTCTCTCGT
1 TGCGATTTCATTTATCGCGTTGCGATTCTCTCGT
2670433 TGCGATTTTCA-TT-TCGCGTTGCGATTCTCTCGT
1 TGCGA-TTTCATTTATCGCGTTGCGATTCTCTCGT
* *
2670466 TGCGATTTCATTTCTCTCGTTGCGACAGTCATTCTCTCGT
1 TGCGATTTCATTTATCGCGTT--G-C-G--ATTCTCTCGT
*
2670506 TGCGATTTTCATTTATCTCGTTGCGATTCT
1 TGCGA-TTTCATTTATCGCGTTGCGATTCT
2670536 TCTGCAAATT
Statistics
Matches: 91, Mismatches: 2, Indels: 17
0.83 0.02 0.15
Matches are distributed among these distances:
32 10 0.11
33 34 0.37
34 6 0.07
35 5 0.05
36 1 0.01
37 2 0.02
38 2 0.02
39 1 0.01
40 15 0.16
41 15 0.16
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.45
Consensus pattern (34 bp):
TGCGATTTCATTTATCGCGTTGCGATTCTCTCGT
Found at i:2670454 original size:19 final size:18
Alignment explanation
Indices: 2670401--2670479 Score: 75
Period size: 14 Copynumber: 4.8 Consensus size: 18
2670391 CAAATCGCAA
2670401 TGCGATTTCATTTCGCGT
1 TGCGATTTCATTTCGCGT
*
2670419 TGCGA-TTC---TCTCGT
1 TGCGATTTCATTTCGCGT
2670433 TGCGATTTTCATTTCGCGT
1 TGCGA-TTTCATTTCGCGT
*
2670452 TGCGA-TTC---TCTCGT
1 TGCGATTTCATTTCGCGT
2670466 TGCGATTTCATTTC
1 TGCGATTTCATTTC
2670480 TCTCGTTGCG
Statistics
Matches: 49, Mismatches: 3, Indels: 18
0.70 0.04 0.26
Matches are distributed among these distances:
14 20 0.41
15 3 0.06
16 3 0.06
17 6 0.12
18 7 0.14
19 10 0.20
ACGTcount: A:0.10, C:0.24, G:0.20, T:0.46
Consensus pattern (18 bp):
TGCGATTTCATTTCGCGT
Found at i:2670526 original size:21 final size:21
Alignment explanation
Indices: 2670457--2670533 Score: 104
Period size: 20 Copynumber: 3.8 Consensus size: 21
2670447 CGCGTTGCGA
2670457 TTCTCTCGTTGCGA-TTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
2670477 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
2670497 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
2670518 TTATCTCGTTGCGATT
1 TTCTCTCGTTGCGATT
2670534 CTTCTGCAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
20 31 0.63
21 18 0.37
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.47
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:2670653 original size:33 final size:33
Alignment explanation
Indices: 2670611--2670681 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
2670601 AATACTAACT
*
2670611 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
2670644 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
2670677 TGAAA
1 TGAAA
2670682 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:2670914 original size:22 final size:21
Alignment explanation
Indices: 2670863--2670916 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
2670853 TGGTTGTGAG
**
2670863 GGATTTCGCCGGAGATGGGAC
1 GGATTTCTTCGGAGATGGGAC
**
2670884 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGAT-GGGAC
2670906 GGATTTCTTCG
1 GGATTTCTTCG
2670917 CCGTAGAGAG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.20, C:0.17, G:0.39, T:0.24
Consensus pattern (21 bp):
GGATTTCTTCGGAGATGGGAC
Found at i:2671090 original size:20 final size:20
Alignment explanation
Indices: 2671063--2671235 Score: 224
Period size: 20 Copynumber: 8.7 Consensus size: 20
2671053 CTTTAAATAT
*
2671063 CGCGTTGCGATTTACGGATT
1 CGCGTTGCGATTTACGGATA
*
2671083 CTCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
*
2671104 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
2671123 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
2671143 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
2671163 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
2671183 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
2671203 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
2671223 CGCGTTGCGATTT
1 CGCGTTGCGATTT
2671236 TATTCGCGTT
Statistics
Matches: 135, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
19 2 0.01
20 131 0.97
21 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:2671268 original size:20 final size:20
Alignment explanation
Indices: 2671245--2671293 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
2671235 TTATTCGCGT
2671245 TGCGATTTGGAAAATCGCAA
1 TGCGATTTGGAAAATCGCAA
* ** *
2671265 TGCGAATTTGTACTATCGCAT
1 TGCG-ATTTGGAAAATCGCAA
2671286 TGCGATTT
1 TGCGATTT
2671294 TCAAGAATCG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (20 bp):
TGCGATTTGGAAAATCGCAA
Found at i:2671311 original size:42 final size:39
Alignment explanation
Indices: 2671222--2671316 Score: 95
Period size: 41 Copynumber: 2.4 Consensus size: 39
2671212 ATTTATGTGT
* *
2671222 TCGCGTTGCG-ATTT-TATTCGCGTTGCGATTTGGAAAA
1 TCGCGTTGCGAATTTGTATTCGCATTGCGATTTGCAAAA
** *
2671259 TCGCAATGCGAATTTGTACTATCGCATTGCGATTTTCAAGAA
1 TCGCGTTGCGAATTTGTA-T-TCGCATTGCGATTTGCAA-AA
*
2671301 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
2671317 GAAACTGATT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
37 8 0.18
38 4 0.09
39 2 0.04
40 1 0.02
41 15 0.33
42 15 0.33
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (39 bp):
TCGCGTTGCGAATTTGTATTCGCATTGCGATTTGCAAAA
Found at i:2675028 original size:2 final size:2
Alignment explanation
Indices: 2675023--2675102 Score: 151
Period size: 2 Copynumber: 39.5 Consensus size: 2
2675013 TTAATCATTA
2675023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2675065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
2675103 ATTACTTAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 75 0.97
3 2 0.03
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2679821 original size:214 final size:214
Alignment explanation
Indices: 2679426--2681098 Score: 2704
Period size: 214 Copynumber: 7.9 Consensus size: 214
2679416 TAAAAATTAT
* * * * * *
2679426 GAAATTTTGAAACTCGCATTCTTTGTTTTCAAAAATTTCATCTTCTTAAAACTTCATTTTCCGTT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
* ** * * *
2679491 TTCAAATTCATTT-AAAACATCCTACCCGAAGGTCTTACGGATGAACCGAATGACTCATCATCTC
66 TTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
* * *
2679555 GCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCACCATGCTCGAAAGACTTACTGATGGCC
131 GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCC
2679620 CGGAGGACTTATAAATTGG
196 CGGAGGACTTATAAATTGG
2679639 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
* *
2679704 TTCAAATTCATTTGAAAACATCCTACCCAAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTT
66 TTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
* * *
2679769 GCTCTAAAGGCTTACAGATGACCCAGAGGATTTAAGCATCATGCTTGAAAGACTTACTGATGGCC
131 GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCC
2679834 CGGAGGACTTATAAATTGG
196 CGGAGGACTTATAAATTGG
*
2679853 GAAATTTTGAAACTTGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
*
2679918 TTCAAATTCATTTGAAAACATCCTACCCGTAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
66 TTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
* * * *
2679983 GCTCTAAAGGCTTACAGATGACCCAGAGGATTTAATCATCATGCTTGGAAGGCTTACTGATGGCC
131 GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCC
2680048 CGGAGGACTTATAAATTGG
196 CGGAGGACTTATAAATTGG
2680067 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
* *
2680132 TTCAAATTCATTTAAAAACATCCTACCCGAATGTCTTATGGATGGCCCGAAGGACTTATCATCTT
66 TTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
* *
2680197 GCTCTAAAGGCTTACAGATGACCGGGAGGATTTAATCATCATGCTTGAAAGACTTACTGATGGCC
131 GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCC
*
2680262 GGGAGGACTTATAAATTGG
196 CGGAGGACTTATAAATTGG
* *
2680281 GAAATTTTGAAACTCGCATTCTTCGTTTTAAAAAAATCCATCTTCTTAAAACATCTTTTTTCTTT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
* *
2680346 TTCAAATTCATTTAAAAACATCCTACCCGAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTT
66 TTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
*
2680411 GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGGAAGACTTACTGATGGCC
131 GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCC
*
2680476 CAGAGGACTTATAAATTGG
196 CGGAGGACTTATAAATTGG
*
2680495 GAAATTTTGAAACTCGCATTCTTCGTTTT-AAAAAA--C-TC--C----AACATCATTTTTTCAT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCA-TTTTTCTT
* *
2680550 TTTCAAATTCATTTGAAAACATCCAACCCGAAGGTCTTATGGATGGCCCGAATGACTTATCATCT
65 TTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCT
* *
2680615 TGCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGGC
130 TGCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGC
2680680 CCGGAGGACTTATAAATTGG
195 CCGGAGGACTTATAAATTGG
* *
2680700 GAAATTTTGAAACTCTCATTCTTCGTTTTCAAAAAAATCCATCTTCTTAAAACATCATTTTTCAT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTC-AAAAAATCCATCTTCTTAAAACATCATTTTTCTT
* *
2680765 TTTCAATTTCATTTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCT
65 TTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCT
* * *
2680830 TACTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTTGAAAGACTCACTGATGGC
130 TGCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGC
2680895 CCGGAGGACTTATAAATTGG
195 CCGGAGGACTTATAAATTGG
*
2680915 GAAATTTTGAAACTCGCATTCTTCGTTTTC-AAAAA--C-TC--C----AACATCATTTTTTTAT
1 GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCT-T
2680970 TTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCT
65 TTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCT
* *
2681035 TGCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGG
130 TGCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGG
2681099 ATTTACTTCA
Statistics
Matches: 1375, Mismatches: 71, Indels: 36
0.93 0.05 0.02
Matches are distributed among these distances:
204 18 0.01
205 302 0.22
207 6 0.00
208 2 0.00
209 1 0.00
210 6 0.00
211 2 0.00
212 1 0.00
213 83 0.06
214 769 0.56
215 178 0.13
216 7 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (214 bp):
GAAATTTTGAAACTCGCATTCTTCGTTTTCAAAAAATCCATCTTCTTAAAACATCATTTTTCTTT
TTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTT
GCTCTAAAGGCTTACAGATGACCCGGAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCC
CGGAGGACTTATAAATTGG
Found at i:2680253 original size:42 final size:42
Alignment explanation
Indices: 2680189--2680268 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
2680179 CGAAGGACTT
* *
2680189 ATCATCTTGCTCTAAAGGCTTACAGATGACCGGGAGGATTTA
1 ATCATCATGCTCTAAAGACTTACAGATGACCGGGAGGATTTA
* *
2680231 ATCATCATGCT-TGAAAGACTTACTGATGGCCGGGAGGA
1 ATCATCATGCTCT-AAAGACTTACAGATGACCGGGAGGA
2680269 CTTATAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 32 0.97
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (42 bp):
ATCATCATGCTCTAAAGACTTACAGATGACCGGGAGGATTTA
Found at i:2680467 original size:42 final size:42
Alignment explanation
Indices: 2680403--2680482 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
2680393 CGAAGGACTT
* * * *
2680403 ATCATCTTGCTCTAAAGGCTTACAGATGACCCGGAGGATTTA
1 ATCATCATGCTCGAAAGACTTACAGATGACCCAGAGGATTTA
* * *
2680445 ATCATCATGCTCGGAAGACTTACTGATGGCCCAGAGGA
1 ATCATCATGCTCGAAAGACTTACAGATGACCCAGAGGA
2680483 CTTATAAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (42 bp):
ATCATCATGCTCGAAAGACTTACAGATGACCCAGAGGATTTA
Found at i:2680668 original size:42 final size:42
Alignment explanation
Indices: 2680608--2680687 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
2680598 CGAATGACTT
* *
2680608 ATCATCTTGCTCTAAAGGCTTACAGATGACCCGGAGGATTTA
1 ATCATCATGCTCGAAAGGCTTACAGATGACCCGGAGGATTTA
* * *
2680650 ATCATCATGCTCGGAAGGCTTACTGATGGCCCGGAGGA
1 ATCATCATGCTCGAAAGGCTTACAGATGACCCGGAGGA
2680688 CTTATAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (42 bp):
ATCATCATGCTCGAAAGGCTTACAGATGACCCGGAGGATTTA
Found at i:2681088 original size:42 final size:41
Alignment explanation
Indices: 2681011--2681097 Score: 102
Period size: 42 Copynumber: 2.1 Consensus size: 41
2681001 AGGTCTTATG
* * *
2681011 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACA
1 GATGACCCGAAGGACTTATCATCATGCTCGAAAGGCTTACA
* * * *
2681052 GATGACCCGGAGGATTTAATCATCATGCTCGGAAGGCTTACT
1 GATGACCCGAAGGACTT-ATCATCATGCTCGAAAGGCTTACA
2681094 GATG
1 GATG
2681098 GATTTACTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 14 0.37
42 24 0.63
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (41 bp):
GATGACCCGAAGGACTTATCATCATGCTCGAAAGGCTTACA
Found at i:2683581 original size:2 final size:2
Alignment explanation
Indices: 2683574--2683670 Score: 194
Period size: 2 Copynumber: 48.5 Consensus size: 2
2683564 ACCACAAGGG
2683574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2683616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2683658 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
2683671 AGGATAAATG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 95 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2686035 original size:21 final size:21
Alignment explanation
Indices: 2686010--2686169 Score: 239
Period size: 21 Copynumber: 7.6 Consensus size: 21
2686000 CCATGCGATG
*
2686010 TGGTCTTCTCGTCTTTATGAA
1 TGGTCTTCTCGTCTTGATGAA
*
2686031 GGGTCTTCTCGTCTTGATGAA
1 TGGTCTTCTCGTCTTGATGAA
2686052 TGGTCTTCTCGTCTTGATGAA
1 TGGTCTTCTCGTCTTGATGAA
*
2686073 TGGCCTTCTCGTCTTGATGAA
1 TGGTCTTCTCGTCTTGATGAA
*
2686094 TGGCCTTCTCGTCTTGATGAA
1 TGGTCTTCTCGTCTTGATGAA
*
2686115 TGGCCTTCTCGTCTTGATGAA
1 TGGTCTTCTCGTCTTGATGAA
***
2686136 TGAAATTCTCGTCTTGATGAA
1 TGGTCTTCTCGTCTTGATGAA
*
2686157 TGCTCTTCTCGTC
1 TGGTCTTCTCGTC
2686170 CTTGGTACGA
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 129 1.00
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.41
Consensus pattern (21 bp):
TGGTCTTCTCGTCTTGATGAA
Found at i:2691565 original size:21 final size:21
Alignment explanation
Indices: 2691535--2691741 Score: 187
Period size: 21 Copynumber: 10.0 Consensus size: 21
2691525 GATTTACATA
*
2691535 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
*
2691556 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
2691577 TTCGCGTTGCGATAGTCGAAA
1 TTCGCGTTGCGATAGTCCAAG
*
2691598 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
*
2691617 TTCGCGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TAGTCCAAG
* *
2691640 TT--CGTTACGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
*
2691659 TTCGCGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TAGTCCAAG
* * *
2691682 TT--CGTTACGATAATCGAAG
1 TTCGCGTTGCGATAGTCCAAG
*
2691701 TTCGCGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TAGTCCAAG
2691724 TT--CGTTGCGATAGTCCAA
1 TTCGCGTTGCGATAGTCCAA
2691742 AATTGCAACG
Statistics
Matches: 155, Mismatches: 19, Indels: 26
0.77 0.09 0.13
Matches are distributed among these distances:
19 43 0.28
21 85 0.55
23 27 0.17
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:2691587 original size:42 final size:41
Alignment explanation
Indices: 2691535--2691738 Score: 277
Period size: 42 Copynumber: 4.9 Consensus size: 41
2691525 GATTTACATA
* *
2691535 TTCGCATTGCGA-TAGTCCAAGTTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATTATTCCAAGTT--CGTTGCGATAGTCGAAG
* * *
2691577 TTCGCGTTGCGA-TAGTCGAAATTCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATTATTCCAAGTTCGTTGCGATAGTCGAAG
*
2691617 TTCGCGTTGCGATTTATTCCAAGTTCGTTACGATAGTCGAAG
1 TTCGCGTTGCGA-TTATTCCAAGTTCGTTGCGATAGTCGAAG
* *
2691659 TTCGCGTTGCGATTTATTCCAAGTTCGTTACGATAATCGAAG
1 TTCGCGTTGCGA-TTATTCCAAGTTCGTTGCGATAGTCGAAG
2691701 TTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
1 TTCGCGTTGCGA-TTATTCCAAGTTCGTTGCGATAGTC
2691739 CAAAATTGCA
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
40 29 0.19
42 121 0.81
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (41 bp):
TTCGCGTTGCGATTATTCCAAGTTCGTTGCGATAGTCGAAG
Found at i:2692519 original size:42 final size:42
Alignment explanation
Indices: 2692472--2692774 Score: 474
Period size: 42 Copynumber: 7.3 Consensus size: 42
2692462 TGCGATTTTG
2692472 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
2692514 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
2692556 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
2692598 GACTATCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * *
2692638 GACTATCGCAACAAATTTGG-A-AAATCGCAACGCAAACTTT
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
2692678 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * *
2692720 GACTATCGCAAGACGCGAACTTCGACT--ATCGCAACGCGAACTTC
1 GACTATCGC-A-A--CGAATTTGGAATAAATCGCAACGCGAACTTC
2692764 GACTATCGCAA
1 GACTATCGCAA
2692775 TGCGAATATG
Statistics
Matches: 246, Mismatches: 9, Indels: 12
0.92 0.03 0.04
Matches are distributed among these distances:
40 75 0.30
41 2 0.01
42 131 0.53
43 2 0.01
44 27 0.11
46 9 0.04
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:2692727 original size:21 final size:21
Alignment explanation
Indices: 2692497--2692780 Score: 237
Period size: 21 Copynumber: 13.6 Consensus size: 21
2692487 TTTGGAATAA
2692497 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* * *
2692518 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTCGACT
2692537 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * *
2692560 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTCGACT
2692579 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * **
2692602 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
2692621 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* * * **
2692642 ATCGCAA--CAAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
* *
2692661 ATCGCAACGCAAACTTTGACT
1 ATCGCAACGCGAACTTCGACT
* * *
2692682 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTCGACT
2692701 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
2692724 ATCGCAAGACGCGAACTTCGACT
1 ATCGC-A-ACGCGAACTTCGACT
2692747 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
2692768 ATCGCAATGCGAA
1 ATCGCAACGCGAA
2692781 TATGTAAATC
Statistics
Matches: 208, Mismatches: 37, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
19 55 0.26
21 104 0.50
22 2 0.01
23 47 0.23
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:2692818 original size:21 final size:21
Alignment explanation
Indices: 2692789--2692841 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
2692779 AATATGTAAA
*
2692789 TCGCATTGCGATAGTCC-AAGT
1 TCGCGTTGCGATAG-CCAAAGT
2692810 TCGCGTTGCGATAGCCAAAGT
1 TCGCGTTGCGATAGCCAAAGT
2692831 TCGCGTTGCGA
1 TCGCGTTGCGA
2692842 ATCTGGAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (21 bp):
TCGCGTTGCGATAGCCAAAGT
Found at i:2694412 original size:25 final size:26
Alignment explanation
Indices: 2694384--2694438 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
2694374 ATTAATAAAA
2694384 AATAT-TTATCTAATGA-AAAATATTT
1 AATATATT-TCTAATGATAAAATATTT
* *
2694409 AATATATTTCTAATGATAATATTTTT
1 AATATATTTCTAATGATAAAATATTT
2694435 AATA
1 AATA
2694439 ACTAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (26 bp):
AATATATTTCTAATGATAAAATATTT
Found at i:2706674 original size:25 final size:25
Alignment explanation
Indices: 2706640--2706689 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
2706630 GATCAGGGGT
2706640 ACTGAAGCATAAACATATAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
*
2706665 ACTGAAGCATAAACATGTAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
2706690 TGGTGCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (25 bp):
ACTGAAGCATAAACATATAGTGATA
Found at i:2707434 original size:28 final size:28
Alignment explanation
Indices: 2707345--2707424 Score: 135
Period size: 27 Copynumber: 2.9 Consensus size: 28
2707335 GAGTCGAGGA
*
2707345 TTCTACGTTGTCCTACGGGACATATGTG
1 TTCTACGTAGTCCTACGGGACATATGTG
2707373 TTCTA-GTAGTCCTACGGGACATATGTG
1 TTCTACGTAGTCCTACGGGACATATGTG
*
2707400 TTCTACGTGGTCCTACGGGACATAT
1 TTCTACGTAGTCCTACGGGACATAT
2707425 TGGTCCTACG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 26 0.53
28 23 0.47
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (28 bp):
TTCTACGTAGTCCTACGGGACATATGTG
Found at i:2707701 original size:20 final size:20
Alignment explanation
Indices: 2707676--2707727 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
2707666 TTTCTATGGG
* *
2707676 ATGTATATGAATATATGTTA
1 ATGTATATGAATATATATAA
2707696 ATGTATAT-ATATATATATAA
1 ATGTATATGA-ATATATATAA
*
2707716 ATGAATATGAAT
1 ATGTATATGAAT
2707728 GACTCATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (20 bp):
ATGTATATGAATATATATAA
Found at i:2710883 original size:25 final size:25
Alignment explanation
Indices: 2710848--2710922 Score: 132
Period size: 25 Copynumber: 3.0 Consensus size: 25
2710838 GATCAGGGGT
*
2710848 ACTGAAACATAAACATATAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
2710873 ACTGAAGCATAAACATATAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
*
2710898 ACTGAAGCATAAACATGTAGTGATA
1 ACTGAAGCATAAACATATAGTGATA
2710923 TGGTGCTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (25 bp):
ACTGAAGCATAAACATATAGTGATA
Found at i:2711663 original size:28 final size:28
Alignment explanation
Indices: 2711587--2711667 Score: 137
Period size: 27 Copynumber: 2.9 Consensus size: 28
2711577 AGAGTCGAGG
2711587 GTTCTACGTGGTCCTACGGGACATATGT
1 GTTCTACGTGGTCCTACGGGACATATGT
* *
2711615 CTTCTA-GTGGTCCTACAGGACATATGT
1 GTTCTACGTGGTCCTACGGGACATATGT
2711642 GTTCTACGTGGTCCTACGGGACATAT
1 GTTCTACGTGGTCCTACGGGACATAT
2711668 TGGTCCTACG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 25 0.52
28 23 0.48
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (28 bp):
GTTCTACGTGGTCCTACGGGACATATGT
Found at i:2711676 original size:28 final size:27
Alignment explanation
Indices: 2711590--2711677 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
2711580 GTCGAGGGTT
2711590 CTACGTGGTCCTACGGGACATAT-GTC
1 CTACGTGGTCCTACGGGACATATGGTC
* *
2711616 TTCTA-GTGGTCCTACAGGACATATGTGTT
1 --CTACGTGGTCCTACGGGACATATG-GTC
2711645 CTACGTGGTCCTACGGGACATATTGGTC
1 CTACGTGGTCCTACGGGACATA-TGGTC
2711673 CTACG
1 CTACG
2711678 GGACAAATTC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
27 21 0.40
28 27 0.52
29 4 0.08
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (27 bp):
CTACGTGGTCCTACGGGACATATGGTC
Found at i:2723699 original size:14 final size:14
Alignment explanation
Indices: 2723680--2723706 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2723670 AAAGTTTGAT
2723680 TAATTTAATTTAAC
1 TAATTTAATTTAAC
2723694 TAATTTAATTTAA
1 TAATTTAATTTAA
2723707 TTGGTGACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATTTAATTTAAC
Found at i:2728115 original size:64 final size:63
Alignment explanation
Indices: 2728046--2728249 Score: 200
Period size: 65 Copynumber: 3.2 Consensus size: 63
2728036 CGGTGCACTA
* *
2728046 ATCGATGCATGAAATGCATTCAATGTTTCAAAATAGCCAGAGTGCATCGATGCATAGCTGGTGC
1 ATCGATGCATGAAATGCATTCGATGTTTCAAAATA-CCAGAGTGCATCGATGCATAGATGGTGC
* * * * *
2728110 ATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ACTCTGACTGCATCGATGCATA-ATATGT
1 ATCGATGCATGAAATGCATTCGATG-TTTCA-AAATAC-CAGAGTGCATCGATGCATAGAT-GGT
2728173 GC
62 GC
* * *
2728175 ATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCCATG-GTGCATCGATGCATGGATTGGT
1 ATCGATGCATGAAATGCATTCGATGTTTCAA--AATACCA-GAGTGCATCGATGCATAGA-TGGT
2728238 GC
62 GC
*
2728240 ATCGGTGCAT
1 ATCGATGCAT
2728250 CACTTTGAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 19
0.77 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 4 0.04
64 39 0.34
65 66 0.58
66 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (63 bp):
ATCGATGCATGAAATGCATTCGATGTTTCAAAATACCAGAGTGCATCGATGCATAGATGGTGC
Found at i:2728704 original size:2 final size:2
Alignment explanation
Indices: 2728697--2728739 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
2728687 TAGCCAATTG
2728697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2728739 A
1 A
2728740 GCTTAAGCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2730372 original size:13 final size:13
Alignment explanation
Indices: 2730354--2730378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2730344 TATCAAAAAC
2730354 ATCAAATTTAGAA
1 ATCAAATTTAGAA
2730367 ATCAAATTTAGA
1 ATCAAATTTAGA
2730379 TTTTCGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (13 bp):
ATCAAATTTAGAA
Found at i:2730826 original size:23 final size:22
Alignment explanation
Indices: 2730799--2730880 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
2730789 GCATGGCCTT
*
2730799 GTGCACCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
2730821 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
2730843 GTGTATCGATGCACATTCAAAGG
1 GTGCATCGATGCACATTC-AAGG
2730866 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
2730881 TGTTAAGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 15 0.32
22 2 0.04
23 18 0.38
24 12 0.26
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:2736512 original size:65 final size:64
Alignment explanation
Indices: 2736314--2736521 Score: 194
Period size: 65 Copynumber: 3.2 Consensus size: 64
2736304 TGCACTAAGA
* * * *
2736314 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATAGCCA-GAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTC-AATTAACCATGAGTGCATCGATGCATGGTTG
* * * * *
2736378 GTGCATCGGTGCATCAAATGCATTCGATGTTTTC-ATAAAACTC-TGAGTGCATCAATGCATAGT
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAT-TAAC-CATGAGTGCATCGATGCATGGT
2736441 AT-
63 -TG
* *
2736443 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCCATG-GTGCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA-TTA-ACCATGAGTGCATCGATGCATGG-T
2736506 TG
63 TG
*
2736508 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
2736522 CACTTTGAAA
Statistics
Matches: 117, Mismatches: 16, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
63 4 0.03
64 46 0.39
65 66 0.56
66 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATTAACCATGAGTGCATCGATGCATGGTTG
Found at i:2738534 original size:17 final size:18
Alignment explanation
Indices: 2738512--2738546 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2738502 GTTGTCAATT
*
2738512 ACAAATA-TATATTATAA
1 ACAAATATTACATTATAA
2738529 ACAAATATTACATTATAA
1 ACAAATATTACATTATAA
2738547 TTATCCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ACAAATATTACATTATAA
Found at i:2740944 original size:13 final size:14
Alignment explanation
Indices: 2740915--2740948 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
2740905 TGGTTTATGG
2740915 TTTAGGGATTATAA
1 TTTAGGGATTATAA
*
2740929 TTTAGGG-TTTTAA
1 TTTAGGGATTATAA
2740942 TTTAGGG
1 TTTAGGG
2740949 GTAGGATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (14 bp):
TTTAGGGATTATAA
Found at i:2741690 original size:44 final size:43
Alignment explanation
Indices: 2741640--2742050 Score: 325
Period size: 44 Copynumber: 9.3 Consensus size: 43
2741630 AATAGGCTTT
*
2741640 AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGCCTC
1 AATTATAAAGGTAGAAAGTGAGATTGAAAAAA-TTAGGGGCCTC
* *
2741684 AATTATAAAGGTA-TAATTGAGATT-AGAAAAATTA-GGGCCTC
1 AATTATAAAGGTAGAAAGTGAGATTGA-AAAAATTAGGGGCCTC
* *
2741725 AATTATAAAGGTAGAAAGTGAGATTGAAAAAATTTATGGGACTC
1 AATTATAAAGGTAGAAAGTGAGATTGAAAAAA-TTAGGGGCCTC
* * * *
2741769 AATTATAAAGTTAAAAAAGTGGGATT-AAAAAATTAAGGGCCTC
1 AATTATAAAGGT-AGAAAGTGAGATTGAAAAAATTAGGGGCCTC
* * *
2741812 AATTATAAAGGTAGAAATTGAGATTAAAAAAATTTAGAGGCCTC
1 AATTATAAAGGTAGAAAGTGAGATTGAAAAAA-TTAGGGGCCTC
* **
2741856 AATTGTAAAGGTAGAAAAGGTAGAAGTGAGATTGAAAAAAACTTAAAGGCCTC
1 AATTATAAAGGT-----A-G-A-AAGTGAGATTG-AAAAAA-TTAGGGGCCTC
* * *
2741909 AATTATAAAGTTA-AAACGTGGGATT-AAAAAATTAGAGGCCTC
1 AATTATAAAGGTAGAAA-GTGAGATTGAAAAAATTAGGGGCCTC
* * ** * * * *
2741951 AATTATAAAAGTAAAAAAAGCGATTGAAAAAAATTAGAGACTTC
1 AATTATAAAGGTAGAAAGTGAGATTG-AAAAAATTAGGGGCCTC
** * *
2741995 AATTATAAAAATA-AAAGGTGAGATTGAATAAAATTA-GGACTTC
1 AATTATAAAGGTAGAAA-GTGAGATTGAA-AAAATTAGGGGCCTC
2742038 AATTATAAAGGTA
1 AATTATAAAGGTA
2742051 AAAAAAATAG
Statistics
Matches: 306, Mismatches: 38, Indels: 47
0.78 0.10 0.12
Matches are distributed among these distances:
41 20 0.07
42 54 0.18
43 76 0.25
44 98 0.32
45 19 0.06
48 1 0.00
49 1 0.00
50 1 0.00
51 1 0.00
52 9 0.03
53 26 0.08
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.26
Consensus pattern (43 bp):
AATTATAAAGGTAGAAAGTGAGATTGAAAAAATTAGGGGCCTC
Found at i:2741834 original size:87 final size:85
Alignment explanation
Indices: 2741640--2742054 Score: 349
Period size: 87 Copynumber: 4.7 Consensus size: 85
2741630 AATAGGCTTT
* * *
2741640 AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGCCTCAATTATAAAGGT-ATAATTGA
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAATTTA-GGGCCTCAATTATAAAGGTAAAAAGTGA
2741704 GATTAGAAAAATTAGGGCCTC
65 GATTAGAAAAATTAGGGCCTC
* * *
2741725 AATTATAAAGGTAGAAAGTGAGATTGAAAAAATTTATGGGACTCAATTATAAAGTTAAAAAAGTG
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAATTTA-GGGCCTCAATTATAAAGGT-AAAAAGTG
*
2741790 GGATTA-AAAAATTAAGGGCCTC
64 AGATTAGAAAAATT-AGGGCCTC
* *
2741812 AATTATAAAGGTAGAAATTGAGATTAAAAAAATTTAGAGGCCTCAATTGTAAAGGTAGAAAAGGT
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAATTTAG-GGCCTCAATTATAAAGGT----AA---
* *
2741877 AGAAGTGAGATTGAAAAAAACTTAAAGGCCTC
58 A-AAGTGAGATT-AGAAAAA-TT-AGGGCCTC
* * * * **
2741909 AATTATAAAGTTA-AAACGTGGGATT-AAAAAA-TTAGAGGCCTCAATTATAAAAGTAAAAAAAG
1 AATTATAAAGGTAGAAA-TTGAGATTGAAAAAATTTAG-GGCCTCAATTATAAAGGTAAAAAGTG
* * * *
2741971 CGATTGAAAAAAATTAGAGACTTC
64 AGATT-AGAAAAATTAG-GGCCTC
** * * *
2741995 AATTATAAAAATA-AAAGGTGAGATTGAATAAAA-TTAGGACTTCAATTATAAAGGTAAAAA
1 AATTATAAAGGTAGAAA-TTGAGATTGAA-AAAATTTAGGGCCTCAATTATAAAGGTAAAAA
2742055 AAATAGATTT
Statistics
Matches: 279, Mismatches: 33, Indels: 34
0.81 0.10 0.10
Matches are distributed among these distances:
85 52 0.19
86 35 0.13
87 104 0.37
88 9 0.03
90 3 0.01
91 2 0.01
93 1 0.00
94 9 0.03
95 22 0.08
96 14 0.05
97 28 0.10
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.26
Consensus pattern (85 bp):
AATTATAAAGGTAGAAATTGAGATTGAAAAAATTTAGGGCCTCAATTATAAAGGTAAAAAGTGAG
ATTAGAAAAATTAGGGCCTC
Found at i:2741878 original size:53 final size:53
Alignment explanation
Indices: 2741818--2741918 Score: 150
Period size: 53 Copynumber: 1.9 Consensus size: 53
2741808 CCTCAATTAT
* * * *
2741818 AAAGGTAGAAATTGAGATT-AAAAAAATTTAGAGGCCTCAATTGTAAAGGTAGA
1 AAAGGTAG-AAGTGAGATTGAAAAAAACTTAAAGGCCTCAATTATAAAGGTAGA
2741871 AAAGGTAGAAGTGAGATTGAAAAAAACTTAAAGGCCTCAATTATAAAG
1 AAAGGTAGAAGTGAGATTGAAAAAAACTTAAAGGCCTCAATTATAAAG
2741919 TTAAAACGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 9 0.21
53 34 0.79
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.23
Consensus pattern (53 bp):
AAAGGTAGAAGTGAGATTGAAAAAAACTTAAAGGCCTCAATTATAAAGGTAGA
Found at i:2741956 original size:139 final size:140
Alignment explanation
Indices: 2741731--2742003 Score: 374
Period size: 139 Copynumber: 2.0 Consensus size: 140
2741721 CCTCAATTAT
* **
2741731 AAAGGTAGAAAGTGAGATTGAAAAAATTTATGGGACTCAATTATAAAGTTAAAAAAGTGGGATTA
1 AAAGGTAGAAAGTGAGATTGAAAAAACTTAAAGGACTCAATTATAAAGTTAAAAAAGTGGGATTA
* * ** *
2741796 AAAAATTAAGGGCCTCAATTATAAAGGTAGAAATTGAGATT-AAAAAAATTTAGAGGCCTCAATT
66 AAAAATTAAGGGCCTCAATTATAAAAGTAAAAAAAGAGATTGAAAAAAA-TTAGAGACCTCAATT
*
2741860 GTAAAGGTAGA
130 ATAAAGGTAGA
* *
2741871 AAAGGTAG-AAGTGAGATTGAAAAAAACTTAAAGGCCTCAATTATAAAGTT-AAAACGTGGGATT
1 AAAGGTAGAAAGTGAGATTG-AAAAAACTTAAAGGACTCAATTATAAAGTTAAAAAAGTGGGATT
* *
2741934 AAAAAATT-AGAGGCCTCAATTATAAAAGTAAAAAAAGCGATTGAAAAAAATTAGAGACTTCAAT
65 AAAAAATTAAG-GGCCTCAATTATAAAAGTAAAAAAAGAGATTGAAAAAAATTAGAGACCTCAAT
2741998 TATAAA
129 TATAAA
2742004 AATAAAAGGT
Statistics
Matches: 117, Mismatches: 13, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
138 2 0.02
139 74 0.63
140 41 0.35
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.25
Consensus pattern (140 bp):
AAAGGTAGAAAGTGAGATTGAAAAAACTTAAAGGACTCAATTATAAAGTTAAAAAAGTGGGATTA
AAAAATTAAGGGCCTCAATTATAAAAGTAAAAAAAGAGATTGAAAAAAATTAGAGACCTCAATTA
TAAAGGTAGA
Found at i:2742063 original size:44 final size:44
Alignment explanation
Indices: 2741934--2742077 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 44
2741924 ACGTGGGATT
* * **
2741934 AAAAAATTAGAGGCCTCAATTATAAAAGT-AAAAAAAGCGATTGA
1 AAAAAATTAGAGACTTCAATTAT-AAAGTAAAAAAAATAGATTGA
**
2741978 AAAAAATTAGAGACTTCAATTATAAA--AATAAAAGGTGAGATTGA
1 AAAAAATTAGAGACTTCAATTATAAAGTAA-AAAAAAT-AGATTGA
* *
2742022 ATAAAATTAG-GACTTCAATTATAAAGGTAAAAAAAATAGATT-T
1 AAAAAATTAGAGACTTCAATTATAAA-GTAAAAAAAATAGATTGA
*
2742065 TAAAAATTAGAGA
1 AAAAAATTAGAGA
2742078 TCTAATTACA
Statistics
Matches: 81, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 30 0.37
44 43 0.53
45 5 0.06
46 2 0.02
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.25
Consensus pattern (44 bp):
AAAAAATTAGAGACTTCAATTATAAAGTAAAAAAAATAGATTGA
Found at i:2743070 original size:21 final size:23
Alignment explanation
Indices: 2743046--2743098 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 23
2743036 TATTCCTATC
2743046 TTTATTCATTTAT-TGTC-TTTG
1 TTTATTCATTTATCTGTCGTTTG
*
2743067 TTTATTTC-TTTATCTTTCGTTTG
1 TTTA-TTCATTTATCTGTCGTTTG
2743090 TTT-TTCATT
1 TTTATTCATT
2743099 ATTTGAATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 12 0.44
22 8 0.30
23 7 0.26
ACGTcount: A:0.11, C:0.11, G:0.08, T:0.70
Consensus pattern (23 bp):
TTTATTCATTTATCTGTCGTTTG
Found at i:2748596 original size:13 final size:13
Alignment explanation
Indices: 2748578--2748602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2748568 ATGCTTAGAA
2748578 CTTTAGATTTAGT
1 CTTTAGATTTAGT
2748591 CTTTAGATTTAG
1 CTTTAGATTTAG
2748603 ACTCTTTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (13 bp):
CTTTAGATTTAGT
Found at i:2749185 original size:129 final size:129
Alignment explanation
Indices: 2749042--2749302 Score: 459
Period size: 129 Copynumber: 2.0 Consensus size: 129
2749032 AATAAGTCAA
* *
2749042 CATCCTTTTTAAAAAATCCTCATGTCATGATTTCAAAACCTTTAAGGCAATGTTTGTTTATTAAG
1 CATCCTTTTTAAAAAACCCTCATGTCATGATTTCAAAACCTTTAAGGCAATGTTTATTTATTAAG
* *
2749107 ATAAATAACGAAACTTTCGCATAAATATCCGAGGGTGGTCATTATTGGTTTTGGTGTCAACATG
66 ATAAAAAACGAAACTTTCGCATAAATACCCGAGGGTGGTCATTATTGGTTTTGGTGTCAACATG
*
2749171 CATCCTTTTTAAAAAACCCTCATGTCATGATTTCAAAATCTTTAAGGCAATGTTTATTTATTAAG
1 CATCCTTTTTAAAAAACCCTCATGTCATGATTTCAAAACCTTTAAGGCAATGTTTATTTATTAAG
* *
2749236 ATAAAAAACGAAACTTTCGTATAAATACCCGAGGGTGGTCATTATTGGTTTTGGTGTCTACATG
66 ATAAAAAACGAAACTTTCGCATAAATACCCGAGGGTGGTCATTATTGGTTTTGGTGTCAACATG
2749300 CAT
1 CAT
2749303 GTATGAATAT
Statistics
Matches: 125, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 125 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (129 bp):
CATCCTTTTTAAAAAACCCTCATGTCATGATTTCAAAACCTTTAAGGCAATGTTTATTTATTAAG
ATAAAAAACGAAACTTTCGCATAAATACCCGAGGGTGGTCATTATTGGTTTTGGTGTCAACATG
Found at i:2749414 original size:2 final size:2
Alignment explanation
Indices: 2749407--2749436 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2749397 AAAATCAAAT
2749407 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2749437 ATGATTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2750709 original size:24 final size:24
Alignment explanation
Indices: 2750681--2750738 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
2750671 ATCGGTAATT
2750681 AATAATAATAACAATACCGATAGA
1 AATAATAATAACAATACCGATAGA
2750705 AATAATAATAACAATACCGATAGA
1 AATAATAATAACAATACCGATAGA
2750729 AATAATAATA
1 AATAATAATA
2750739 TTTCCGATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.22
Consensus pattern (24 bp):
AATAATAATAACAATACCGATAGA
Found at i:2756023 original size:71 final size:71
Alignment explanation
Indices: 2755926--2756065 Score: 212
Period size: 71 Copynumber: 2.0 Consensus size: 71
2755916 GAATAGTTTG
*
2755926 TCTTGAAATAAATGTTTTCATGGGAAT-CAACATTTTAATATCTCAAGGTTCCAAATTGATCCAA
1 TCTTGAAATAAAAGTTTTCATGGGAATCCAA-ATTTTAATATCTCAAGGTTCCAAATTGATCCAA
2755990 ATCAATT
65 ATCAATT
* * *
2755997 TCTT-AAACTAAAAGTTTTCGTGGGAATCCGAATTTTACTATCTCAAGGTTCCAAATTGATCCAA
1 TCTTGAAA-TAAAAGTTTTCATGGGAATCCAAATTTTAATATCTCAAGGTTCCAAATTGATCCAA
2756061 ATCAA
65 ATCAA
2756066 CTTATAAAAC
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
70 3 0.05
71 58 0.92
72 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (71 bp):
TCTTGAAATAAAAGTTTTCATGGGAATCCAAATTTTAATATCTCAAGGTTCCAAATTGATCCAAA
TCAATT
Found at i:2756247 original size:31 final size:32
Alignment explanation
Indices: 2756203--2756271 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
2756193 TTCAAGCATG
* *
2756203 AATTCAA-CCTCATATA-ATCAAATT-AATGCA
1 AATTCAATCATCATA-ACATCAAATTCAATACA
*
2756233 ATTTCAATCATCATAACATCAAATTCAATACA
1 AATTCAATCATCATAACATCAAATTCAATACA
2756265 AATTCAA
1 AATTCAA
2756272 CCAATTTCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 7 0.22
31 14 0.44
32 11 0.34
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.30
Consensus pattern (32 bp):
AATTCAATCATCATAACATCAAATTCAATACA
Found at i:2760384 original size:22 final size:22
Alignment explanation
Indices: 2760356--2760398 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
2760346 TTTCATATTA
2760356 TCATCTCAAATAACTGATGATT
1 TCATCTCAAATAACTGATGATT
2760378 TCATCTCAAATAACTGATGAT
1 TCATCTCAAATAACTGATGAT
2760399 AATCTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (22 bp):
TCATCTCAAATAACTGATGATT
Found at i:2761869 original size:12 final size:12
Alignment explanation
Indices: 2761839--2761872 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
2761829 ACTTTGCTTA
*
2761839 ACTTTCACATTT
1 ACTTTCATATTT
2761851 ACTTTTCATATTT
1 AC-TTTCATATTT
2761864 ACTTTCATA
1 ACTTTCATA
2761873 GCCCAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.53
Consensus pattern (12 bp):
ACTTTCATATTT
Found at i:2767925 original size:16 final size:16
Alignment explanation
Indices: 2767904--2767936 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2767894 AAGAAGCTGG
*
2767904 CCCATTGATCTTAACA
1 CCCATTAATCTTAACA
2767920 CCCATTAATCTTAACA
1 CCCATTAATCTTAACA
2767936 C
1 C
2767937 TTGTCAAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (16 bp):
CCCATTAATCTTAACA
Found at i:2768723 original size:18 final size:18
Alignment explanation
Indices: 2768700--2768746 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
2768690 ATGCAAAAAT
2768700 GGTACCGATACCCAAAGG
1 GGTACCGATACCCAAAGG
2768718 GGTACCGATACCCAAAGG
1 GGTACCGATACCCAAAGG
*
2768736 GGTACCAATAC
1 GGTACCGATAC
2768747 TACTTTACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.13
Consensus pattern (18 bp):
GGTACCGATACCCAAAGG
Found at i:2774172 original size:76 final size:76
Alignment explanation
Indices: 2774092--2774236 Score: 177
Period size: 76 Copynumber: 1.9 Consensus size: 76
2774082 TTCTTGATTT
* * * * *
2774092 TCTTAGGTCTTGTCTCCTAGAGAA-CTGAATGTAGTCTTCCTTAAAA-CTGTTTCCCTAGAAACA
1 TCTTAGGACTTATCTCCTAGA-AAGCTCAATCTAGTATTCCTTAAAATC-GTTTCCCTAGAAACA
2774155 TCAATCTTTGCTA
64 TCAATCTTTGCTA
* * * *
2774168 TCTTAGGACTTATCTCCTAGAAAGCTCAATCTAGTATTTCTTAAGATCGTTTCTCTAGAAACCTC
1 TCTTAGGACTTATCTCCTAGAAAGCTCAATCTAGTATTCCTTAAAATCGTTTCCCTAGAAACATC
2774233 AATC
66 AATC
2774237 AGGTTTTTCT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
75 2 0.03
76 55 0.95
77 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (76 bp):
TCTTAGGACTTATCTCCTAGAAAGCTCAATCTAGTATTCCTTAAAATCGTTTCCCTAGAAACATC
AATCTTTGCTA
Found at i:2775954 original size:59 final size:59
Alignment explanation
Indices: 2775862--2775990 Score: 168
Period size: 59 Copynumber: 2.2 Consensus size: 59
2775852 CGTAATGCAA
* * * ** *
2775862 TCCCGAGTATGACACATAAGGTCGTGTCCACCATCTGTACTAGGTATCCTTAAGTATAG
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCATTAAGTATAG
* * * *
2775921 TCCCGAATATGACACATAAGGTTGTGCCCACCATATACACTAGGTATCATTTAGTGTAT
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCATTAAGTATAG
2775980 TCCCGAATATG
1 TCCCGAATATG
2775991 TAGCCTGCTG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (59 bp):
TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCATTAAGTATAG
Found at i:2778875 original size:29 final size:29
Alignment explanation
Indices: 2778833--2779011 Score: 161
Period size: 29 Copynumber: 6.3 Consensus size: 29
2778823 CCGTTGACCT
*** *
2778833 GTGCTATTTTGGGAATTAATTCAGTTTTG
1 GTGCTATTTTGGGAATTAATTCAAAATAG
2778862 GTGCTATTTTGGGAATTAATTCAAAATAG
1 GTGCTATTTTGGGAATTAATTCAAAATAG
* * *
2778891 GTGCTATTTTGGTAATT-TTTCGAAA-A-
1 GTGCTATTTTGGGAATTAATTCAAAATAG
* * * *
2778917 GTGATATTCTGGGAATTAATTCGAAATTG
1 GTGCTATTTTGGGAATTAATTCAAAATAG
* *
2778946 ATGCTATTTTGGGAATTAATTCGAAAA-GG
1 GTGCTATTTTGGGAATTAATTC-AAAATAG
* * *
2778975 GTGCTATTTTGGTAATT-ATTTAAAAAAG
1 GTGCTATTTTGGGAATTAATTCAAAATAG
*
2779003 GTACTATTT
1 GTGCTATTT
2779012 GTGTAAAATG
Statistics
Matches: 123, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
26 14 0.11
27 12 0.10
28 18 0.15
29 76 0.62
30 3 0.02
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (29 bp):
GTGCTATTTTGGGAATTAATTCAAAATAG
Found at i:2778937 original size:55 final size:56
Alignment explanation
Indices: 2778834--2778973 Score: 156
Period size: 55 Copynumber: 2.5 Consensus size: 56
2778824 CGTTGACCTG
**** * * *
2778834 TGCTATTTTGGGAATTAATTCAGTTTTGGTGCTATTTTGGGAATTAATTCAAAATAGG
1 TGCTATTTTGGGAATTAATTC-G-AAAAGTGATATTCTGGGAATTAATTCAAAATAGA
* * * *
2778892 TGCTATTTTGGTAATT-TTTCGAAAAGTGATATTCTGGGAATTAATTCGAAATTGA
1 TGCTATTTTGGGAATTAATTCGAAAAGTGATATTCTGGGAATTAATTCAAAATAGA
2778947 TGCTATTTTGGGAATTAATTCGAAAAG
1 TGCTATTTTGGGAATTAATTCGAAAAG
2778974 GGTGCTATTT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
55 40 0.59
56 10 0.15
57 3 0.04
58 15 0.22
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (56 bp):
TGCTATTTTGGGAATTAATTCGAAAAGTGATATTCTGGGAATTAATTCAAAATAGA
Found at i:2778983 original size:84 final size:84
Alignment explanation
Indices: 2778837--2778991 Score: 233
Period size: 84 Copynumber: 1.8 Consensus size: 84
2778827 TGACCTGTGC
* ** *
2778837 TATTTTGGGAATTAATTCAGTTTTGGTGCTATTTTGGGAATTAATTCAAAATAGGTGCTATTTTG
1 TATTCTGGGAATTAATTCAGAATTGATGCTATTTTGGGAATTAATTCAAAATAGGTGCTATTTTG
2778902 GTAATTTTTCGAAAAGTGA
66 GTAATTTTTCGAAAAGTGA
*
2778921 TATTCTGGGAATTAATTC-GAAATTGATGCTATTTTGGGAATTAATTCGAAAA-GGGTGCTATTT
1 TATTCTGGGAATTAATTCAG-AATTGATGCTATTTTGGGAATTAATTC-AAAATAGGTGCTATTT
2778984 TGGTAATT
64 TGGTAATT
2778992 ATTTAAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.02
84 59 0.92
85 4 0.06
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (84 bp):
TATTCTGGGAATTAATTCAGAATTGATGCTATTTTGGGAATTAATTCAAAATAGGTGCTATTTTG
GTAATTTTTCGAAAAGTGA
Found at i:2786163 original size:18 final size:18
Alignment explanation
Indices: 2786100--2786162 Score: 110
Period size: 18 Copynumber: 3.6 Consensus size: 18
2786090 CGACCCGTTT
2786100 ACCCGTTGACCCGACCCG
1 ACCCGTTGACCCGACCCG
2786118 A-CCGTTGACCCGACCCG
1 ACCCGTTGACCCGACCCG
*
2786135 ACCCGTTGACTCGACCCG
1 ACCCGTTGACCCGACCCG
2786153 ACCCGTTGAC
1 ACCCGTTGAC
2786163 TTTATTTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
17 17 0.40
18 26 0.60
ACGTcount: A:0.17, C:0.46, G:0.22, T:0.14
Consensus pattern (18 bp):
ACCCGTTGACCCGACCCG
Found at i:2787326 original size:20 final size:20
Alignment explanation
Indices: 2787303--2787340 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2787293 CGATAAAATC
2787303 ATAATATGTAC-ATAAATCAA
1 ATAAT-TGTACAATAAATCAA
*
2787323 ATAATTGTTCAATAAATC
1 ATAATTGTACAATAAATC
2787341 TCAGAATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (20 bp):
ATAATTGTACAATAAATCAA
Found at i:2791013 original size:960 final size:959
Alignment explanation
Indices: 2786874--2793238 Score: 9098
Period size: 960 Copynumber: 6.7 Consensus size: 959
2786864 TCTTAGATTT
* *
2786874 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCATACCCATATATAAAACAAAAAACAAT
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAAAACAAT
* *
2786939 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGTAACGCTGGAAAAACTCCCTTATTGATG
66 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATG
*
2787004 TCGATAGCTGCCTTGGTACAGTTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAAA
131 TCGATAGCTGCCTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAAA
*
2787069 GCTTTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAAT
196 GCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAAT
* * *
2787134 TTTCCTTATTGAATCAGACATATACCGATTTTTGGAATGATATGGGGTTCCAATGGTAGTTCGTC
261 TTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTCATC
*
2787199 AAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTTATAAGGTCG
326 AAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCG
* * * * *
2787264 AATAGGATGTCTAGTTTATTCCAACGGTACGATAAAATCATAATATGTACA-TAAATCAAATAAT
391 AATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACT-AATCAAATGAT
* * * * * *
2787328 TGTTCAATAAATCTCAGAATTCATACTGTATTGGTGCTTTTTAAACTCATATTTAAAACCGTCGT
455 AGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGT
**
2787393 ATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTATGCAAGAAAGTTCGGGGCCACGGGGC
520 ATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCAC-GGGC
* *
2787458 CTACCTAAGAACACATCTTAGGGTCACAGAGCCTACCCGAGAATGATCTCAGTGCC-CTAGAGCC
584 CTACCTAAGAACACATCTTAGGGCCACAG-GCCTACCCGAGAATGATCTCAGGGCCGC-AGAGCC
* * * * *
2787522 TACCTAAGAGTCACATTTGGTCCATAAAATTTTTTCAGCTTGATCAGAGTTGTACTTTACAAATA
647 TACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAACA
2787587 TGTATCTCCAAGATACAATTTATACAGTGATACAAAAT-CATAAGCCATCACCGTTAAGTCGGTG
712 TGTATCTCCAAGATACAATTTATACAGTGATAC-AAATCCATAAGCCATCACCGTTAAGTCGGTG
* * *
2787651 CATCCAGAAAACAGTAACCATAGATTTCAGTGTACCACATATTAAAACAAT--AA-AATATTTTT
776 CATCCATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTT
** * * * *
2787713 AATGCGATCCGATCTGGAGTGTTACATTAGGGCCACTGAAGCGACTCACCCTAAAAATAGCGGAA
841 AACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCGAAGCGACTCACCGTAAAAATAGCGGAA
* * *
2787778 AATTTTAAACTTTTCTTAAAACTTGTAAACTCATAATATTATTTATAAGTACAA
906 AATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
*
2787832 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTTAGACTCATATATAAAACAAAATAA-AA
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAA-AACAA
* *
2787896 TTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTAAT
65 TTACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGAT
* * *
2787961 TTCGATAGCTGCCTTGGTACAGTTCTTTTAACCTGCAATGGTTAGTAATGGAGTGAGTTTCGGAA
130 GTCGATAGCTGCCTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAA
*
2788026 AGATCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAA
195 AGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAA
* * * * *
2788091 TTTTCCTTATTGAAACAGACATATACCGGTTTTTGGAATGATATGGGGTTCCAATGGTAGATCAT
260 TTTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTCAT
* * * *
2788156 CAAGTAAAAGCTATAAAGATCTCAGATCATAATAAGCATTCATGGTATTACGGTTTCATAAGGTC
325 CAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTC
* *
2788221 GAATAGAATGTCTAGTGTGTTCTAACAGTACGATAAAATCATAATAGGTACACTAATCAAATGAT
390 GAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATGAT
* * * * * *
2788286 AGTTCAATAAATCTTAGAAATAATATTTTAGTGGAGCTTTTTAAACTCGTATTTAAAACCTTCAT
455 AGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGT
*
2788351 ATAAAGTCCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCACGAGGC
520 ATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCACG-GGC
* * *
2788416 ATACCTAAGAACACATCTTAGGGTCGCA-AGG-TTACCCGAGAATGATCTCAGGGCCGCATAGCC
584 CTACCTAAGAACACATCTTAGGG-C-CACAGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCC
* * * *
2788479 TACCTAAGAGTCACATTATGTTCATCAAAATTTTCCAGCTTGATCAGAGCTGTACCTTACAAA-A
647 TACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAACA
* * *
2788543 CTGTATCTCCAAGATACAGTTTATACAGTGACACAAATCCATAAGCCATCACCGTTAAGCCGGTG
712 -TGTATCTCCAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
* * *
2788608 TATCCATAAAATAGTAACCATAGATTTTAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTT
776 CATCCATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTT
* * * * * * * * * * *
2788672 AACCTGATTCGATCTGGTGTGTCACATTAAGGCCACTGGAGC-ATCCCACCATAAAAATAACAGA
841 AACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCGAAGCGA-CTCACCGTAAAAATAGCGGA
2788736 AAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
905 AAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
*
2788791 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAGCAAAATAA-AA
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAA-AACAA
* *
2788855 TTACATGCCCCCTAATCACTTGTACCATACTCTGCAAGCAACGCCAGAAAAACTCCCTTATTGAT
65 TTACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGAT
* * * *
2788920 TTCGATAGCTGCAC-TGGTACAATTCTTTTAACCTGCAATGGTAAGTAATAGAGTGAGATTT-GA
130 GTCGATAGCTGC-CTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAG-TTTCGG
* *
2788983 AAAGCTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATACAGATAAATTGAAAGCCATAT
193 AAAGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATAT
* * * *
2789048 AATTTTCCTTA-T---T-A-A-AT-TACCG-GTTTCAGAATAATCTAGGGTTCCAATGGTAGTTC
258 AATTTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTC
*
2789104 ATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACTGTTTCATAAGG
323 ATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGG
* * * * *
2789169 CCGAATAGGATGTCTAATGTGTTTCAACAGTACGATAAGATCATAATAGGTACACTAATTAAATG
388 TCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATG
* * *
2789234 ATAGTTCAATAATTCTAAGAAATCATACTGTAGTGGAGCTTTTTAAACTCATATTTAAAACCATC
453 ATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATC
* ** *
2789299 GTATAAACACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACAAAAGAAAGTTCGGAGCCACAGG
518 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCAC-GG
* ** * *
2789364 GCCTA-CTAAGAACACATCTTAGGGTCACAGGGCAAACCCGAGAATGATCTGAGGGCCGAAGAGC
582 GCCTACCTAAGAACACATCTTAGGGCCACA-GGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * *
2789428 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTCCCAACTTGATCAGAGCTGTACTTTAAAAAT
646 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAA-
* * * * * **
2789493 C-TGTATCTCCAAGATATAGTTTATACAGTCATAAAAATCCGTAAGCCATCACTATTAAGTCGGT
710 CATGTATCTCCAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
* * * *
2789557 GCATCAATAAAACAGTAACCATAGATTTTAGTGTA-CACTATGTT-AAATAATAAAACAAATTTT
775 GCATCCATAAAACAGTAACCATAGATTTCAGTGTACCAC-ATGTTAAAACAATAAAACAATTTTT
* ** **
2789620 TTAACCCGATCCGATCTGGAGTGTCACATTAGGGCCACCGGAA-TTACTCAGTGTAAAAATAGCG
839 TTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACC-GAAGCGACTCACCGTAAAAATAGCG
* *
2789684 GAAAAGTTAAAACTTTTCTTAAAGCTTGTAAACTCATAAAATTATTTATGAGTACAA
903 GAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
* * * * *
2789741 AATAAAAGTTATCATTATTTTAAATAAAACATATTTTCAGACTCATATATAAAACAAAATACAAT
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAAAACAAT
* * *
2789806 TACATGCCCCCTAATCACATGTACCATACTTTGCAAGAAACGCCAGAAAAACTCCC-TAGTTGAT
66 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTA-TTGAT
* * *
2789870 GTCGATAGCTGGAC-TGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGCTTCGAA
130 GTCGATAGCT-GCCTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGA
* * * * *
2789934 AAGCTCTGTAATACAGAACTGCGAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATATA
194 AAGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATA
* * *
2789999 ATTTTCCTTATTGAATCAGACATATACC-AGTTTTCAGAATAATCTCGGGTTCCAATGGTAGTTC
259 ATTTTCCTTATTGAATCAGACATATACCGA-TTTTCGGAATAATATGGGGTTCCAATGGTAGTTC
* * *
2790063 ATCAAGTAGAAGCTATAAAGATGTCAGTTAATAAGAAGCATTCATGGTATCACGGTTTCATAAGT
323 ATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGG
* * *
2790128 TCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTATATTAATCAACTG
388 TCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATG
* * *
2790193 ATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAACTTTTTAAATTCGTATTT-AAACCATT
453 ATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATC
* *
2790257 GTATAAAGACCTAAGGGAACATCTTAGGGACTGAGAGTCTACCCAAGAAAGTTCGGGGCCACTGG
518 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCAC-GG
* * *
2790322 GCCTACCTAAGAACACATCTTAGGGCCACAGGTCTTACCAGAGAATGATCTCAGCGCCGCAGAGC
582 GCCTACCTAAGAACACATCTTAGGGCCACAGG-CCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* *
2790387 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTTCAGCTTGCTCAGAGCTGTACTTTACAAAC
646 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAAC
* * * *
2790452 ATGTATCTTCAAGATACAATTTATACATTGATACAAATCCATAAGACACCACCGTTAAGTCGGTG
711 ATGTATCTCCAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
*
2790517 CATCCATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATATAACAATTTTTTT
776 CATCCATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTT
* *
2790582 AACCCGATCCGATCTAGAGTCTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAA
841 AACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCGAAGCGACTCACCGTAAAAATAGCGGAA
* *
2790647 AATTTAAAACTTTTCTTAAAACTTGTTAACTCATAAAGTTATTTATGAGTACAA
906 AATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
* *
2790701 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCATACCCATATATAAAACAAAAAACAAT
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAAAACAAT
* *
2790766 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGTAACGCTGGAAAAACTCCCTTATTGATG
66 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATG
*
2790831 TCGATAGCTGCCTTGGTACAGTTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAAA
131 TCGATAGCTGCCTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAAA
*
2790896 GCTTTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAAT
196 GCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAAT
* * *
2790961 TTTCCTTATTGAATCAGACATATACCGATTTTTGGAATGATATGGGGTTCCAATGGTAGTTCGTC
261 TTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTCATC
*
2791026 AAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTTATAAGGTCG
326 AAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCG
* * * * * * *
2791091 AATAGGATGTCTAGTTTATTCCAACGGTACGATAAAATCATAATATGTACACAAATCAAATAATT
391 AATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATGATA
* * * * *
2791156 GTTCAATAAATCTCAGAATTCATACTGTATTGGTGCTTTTTAAACTCATATTTAAAACCGTCGTA
456 GTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTA
**
2791221 TAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTATGCAAGAAAGTTCGGGGCCACGGGGCC
521 TAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCAC-GGGCC
* * * * *
2791286 TACCTAAGAACACATCTTAGGGCTACAGGGCCTACCCTAGAATGATCTGAGGGTCGAAGAGCCTA
585 TACCTAAGAACACATCTTAGGGCCACA-GGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTA
* * *
2791351 CCTAAGAGTAACACTAGGTCCACAAAAAATTTT-CAGCTTGATCAGAGCTGTACTTTACAAATC-
649 CCTAAGAGTCACATTAGGTCCA-TAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAA-CA
* * * *
2791414 TGTATCTGCAAGATACAATTTATACAGTGATACAAATACATAAGCCATCTCTGTTAAGTCGGTGC
712 TGTATCTCCAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGC
*
2791479 ATCCATAAAACAGTAACCATAGATTTAAGTGTACCACATGTTAAAACAATAAAACAA--TTTTTA
777 ATCCATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTTA
* * *
2791542 CACCCGATCTGATCTAGAGTATCACATTAGGGCCACC-AGAGTGACTCACCGT---AA-A----A
842 -ACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCGA-AGCGACTCACCGTAAAAATAGCGGA
* * * *
2791598 AAATTTAAAATTTTTCTTAAAGCTTCTAAACTCATAAAATTATTAATGAGTACAA
905 AAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
* * * * *
2791653 AATAAAAGTTATCATTATTAGAAATTAAATAGATTTTCAGACTCATATATAAAATAAAATACAAT
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAAAACAAT
* * *
2791718 TACAAGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGTATAACTCCCTTATTGATG
66 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATG
* * * *
2791783 TCGATAGCTGCATTGGTACAATTCTTTTAACCTACAATGGTAAGTAATGGAGTGAGATTCGGAAA
131 TCGATAGCTGCCTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAAA
* * * *
2791848 GCTCTGTAATACATAACTACCAGCTGATGTTATAGGACATGCAGATAAATTGAAAGCCATATAAT
196 GCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAAT
* * *
2791913 TTTCCTTATTAAATCAGACATATACCGATATTCGGAATAACATGGGGTTCCAATGGTAGTTCATC
261 TTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTCATC
* * *
2791978 AAGTAGATGCTATAAAGATCTCAGTTCATAAGTAGCATTCATGGTATCAAGGTTTCATAAGGTCG
326 AAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCG
* *
2792043 AATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATAATAATAGGTACACTGATCAAATGATA
391 AATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATGATA
* * *
2792108 GTTCAATAAATCTCAGAAATCATACTTTAGTGGAGCTTTTTAAATTCGTATTTAAAACCATTGTA
456 GTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTA
* * * * *
2792173 TAAAGAACTAAAGGAACATCTGAGGGCCTGAGAGCCTACCCAAGAAAGTTCGTGGCCATGGGGCC
521 TAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCA-CGGGCC
* * * * * * *
2792238 TACCTAAGAAAACATCTTAGGGCCACTGGCCTACCCTAGAATGATCTTAAGACCGCATAGCCTAC
585 TACCTAAGAACACATCTTAGGGCCACAGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTAC
* * * * * * *
2792303 CTAAAAGTCACATTAGGTCAATAAATATTTCCCAGCTTGATCAGAGTTATACTTTACAAATATGT
650 CTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAACATGT
* * * *
2792368 ATCCCCAAGATACACTTTATACAGTGATACAAATCCGTAAGCCATCACTGTTAAGTCGGTGCATC
715 ATCTCCAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATC
* *
2792433 CATAAAATAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTCTTTTAACC
780 CATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTTAACC
* * * * * * *
2792498 TGATCTGATC-AGGAGTGTCTCATTAGGGCCACCGGAGTGACTCACCATAAAAATAGCTGAAAAT
845 CGATCCGATCTA-GAGTGTCACATTAGGGCCACCGAAGCGACTCACCGTAAAAATAGCGGAAAAT
*
2792562 TTAAAACTTTTC-TAAAAGCTTGTAAACTCATAAAATAATTTATGAGTACAA
909 TTAAAACTTTTCTTAAAA-CTTGTAAACTCATAAAATTATTTATGAGTACAA
* *
2792613 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATGTATAAAACAAAATACAAT
1 AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAAAACAAT
* ** *
2792678 TACATGCCCCCTAATCACATGTACCATACTTTGCAAGCAATTCCAGAAAAACTCCCTTATTGATG
66 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATG
* * * * *
2792743 TCAATAGCTACAC-TGGTACAATTCTTTTAACCTGCAATGATGAGTAATGGAGTGAGCTTCAGAA
131 TCGATAGCTGC-CTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAA
* * * *
2792807 AGATCTGTAATACAGAACTACCAGGTGATGCTATATGACATGCAAATAAATTGAAAGCCATATAA
195 AGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAA
* * * *
2792872 TTTTCCTTAATGAATAAGAC--AT----ATTTTCGGAATAATCTAGGGTTCCAATGGTAGTTCAT
260 TTTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTCAT
* * *
2792931 CAAGTAGATGCTATAAAGATCTCAGTTAATAAGAAGCATTCATGTTATCACGGTTTCATAAGGTC
325 CAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTC
* * * *
2792996 GAATAGGATGTCTAATGTGTTCCAACATTACAATAAAATTATAATAGGTACACTAATCAAATGAT
390 GAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATGAT
* * *
2793061 AGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTGTTTAAGCTCGTATTTAAGACCATCGT
455 AGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGT
*
2793126 ATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCACGAGAC
520 ATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCACG-GGC
* * *
2793191 CTA-CTATGAACACATCTTAGGGCTACAGGGCCTACCCTAGAATGATCT
584 CTACCTAAGAACACATCTTAGGGCCACA-GGCCTACCCGAGAATGATCT
2793239 GCAAGATACA
Statistics
Matches: 4849, Mismatches: 486, Indels: 148
0.88 0.09 0.03
Matches are distributed among these distances:
947 2 0.00
948 1 0.00
949 42 0.01
950 790 0.16
951 201 0.04
952 647 0.13
953 27 0.01
954 295 0.06
955 3 0.00
956 8 0.00
957 189 0.04
958 641 0.13
959 777 0.16
960 928 0.19
961 286 0.06
962 12 0.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (959 bp):
AATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAAAACAAT
TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATG
TCGATAGCTGCCTTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGTTTCGGAAA
GCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAAT
TTTCCTTATTGAATCAGACATATACCGATTTTCGGAATAATATGGGGTTCCAATGGTAGTTCATC
AAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCG
AATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAATGATA
GTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTA
TAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCGGGGCCACGGGCCT
ACCTAAGAACACATCTTAGGGCCACAGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACC
TAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTACTTTACAAACATGTA
TCTCCAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCC
ATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTTAACCC
GATCCGATCTAGAGTGTCACATTAGGGCCACCGAAGCGACTCACCGTAAAAATAGCGGAAAATTT
AAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
Found at i:2798772 original size:959 final size:956
Alignment explanation
Indices: 2796750--2798830 Score: 3275
Period size: 951 Copynumber: 2.2 Consensus size: 956
2796740 GAATGATTTG
* *
2796750 CAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCTCTGTTAAGTCAGTGCATCCATAA
1 CAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAA
2796815 AACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTACACCCGATCC
66 AACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTA-ACCCGATCC
* * * * *
2796880 GATCTAGTGTATCACATAAGGGCCACCAGAGTTACTCACCGTAAAAATAGCGAAAAATTTAAAAC
130 GATCTGGAGTATCACATTAGGGCCACCGGAGTGACTCACCGTAAAAATAGCGAAAAATTTAAAAC
* * *
2796945 TTTTCTTAAAGCTTGTACACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTG
195 TTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAATAAAAGTTATCAGTATTTG
*
2797010 AAATAAAATAGATTTTCAGACTCATATATAAAACAAAATACAATTACAAGCCCCCTAATCACATG
260 AAATAAAATAGATTTTCAGACTCATATATAAAACAAAATACAACTACAAGCCCCCTAATCACATG
* *
2797075 CACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAA
325 CACCATACTCTGCAAGCAACGCCAGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAA
*
2797140 TTCTTTTAACCTGCAATGTTGAGTAATAGAGTGAGCTTCGGAAAGCTCTGTAATACATAACTACC
390 TTCTTTTAACCTGCAATGTTGAGTAATAGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACC
2797205 AGCTGATGCTATAGGACATACAAATAAATTGAAAGCCATATAATTTTCCTTATTAAATCAGACAT
455 AGCTGATGCTATAGGACATACAAATAAATTGAAAGCCATATAATTTTCCTTATT--ATCAGACAT
* * * *
2797270 ATATCGGTATTTAGAATAATCTGGGGTTCTAATGGTAGTTCATCAAGTAGAAGCTATAAAGATAT
518 ATACCGATATTTAGAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATAT
* * * *
2797335 CAGTTCATAAGAATCATTCATGGCATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTC
583 CAGTTCATAAGAAGCATTCATGGCATCACGGCTTCATAAGGTCAAATAGGATGTCTAATGTGTTC
* *
2797400 CAATAGTACGATAAAATAATAATAGGTACACTAATCAAATGACAGTTCAATAAATCTCAGAAATC
648 CAACAGTACGATAAAATAATAATAGGTACACAAATCAAATGACAGTTCAATAAATCTCAGAAATC
* *
2797465 ATACTTTAGTGAAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGAACTAAGGGAACATCT
713 ATACTGTAGTGAAGATTTTTAAACTCGTATTTAAAACCATCGTATAAAGAACTAAGGGAACATCT
* ** * * *
2797530 TAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGACACGGAGCCCACTAAGAACATATCTTACAG
778 TAGGGCCAGAGAGCCTACCCAAGAAAGTTCAGAGACACGGAGCCCAATAAGAACACATCTTACAG
* * * *
2797595 CTACATGGCCTACCCGAGAATGATCTGAGGGCAGCATAGCCTACCTAAGAGTCAGATTAGGTCCA
843 CTACAGGGCCTACCCGAGAATGATCTGAGGGCAGAAGAGCCTACCTAAGAGTCACATTAGGTCCA
* * * *
2797660 TAAAAATTTTCCAGTTTTATCAGAACTGTACTTTACAAATCTGTATCTC
908 TAAAAATTTTCCAGCTTGATCAGAACTATACTTTACAAATCTATATCTC
* * *
2797709 CAAGATACAATTTATACAGTGATACAAATACATAAGCCATCACTGTTAAGTTGGTGCATCTATAA
1 CAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAA
* * * *
2797774 AACAGTAACCATAGATTTCAGTGTGCCACATGTTAAAACAATAAAAAAAAATTTGAACCCGATCC
66 AACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAAT-AAAACAATTTTTAACCCGATCC
* *
2797839 GATCTGGAGTATCACATTAGGGCCACCGGAGCGACTCACCGTAAAAATAGCGGAAAATTTAAAAC
130 GATCTGGAGTATCACATTAGGGCCACCGGAGTGACTCACCGTAAAAATAGCGAAAAATTTAAAAC
2797904 TTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAATAAAAGTTATCAGTATTTG
195 TTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAATAAAAGTTATCAGTATTTG
* *
2797969 AAATAAAATAGATTTTCAGACTCATATTTAAAACAAAATACAACTACAAGCCTCCTAATCACATG
260 AAATAAAATAGATTTTCAGACTCATATATAAAACAAAATACAACTACAAGCCCCCTAATCACATG
* *
2798034 TACCATACTCTGCAAGCTAA-GCCAGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTAGA
325 CACCATACTCTGCAAGC-AACGCCAGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACA
* *
2798098 ATTCTTTTAACTTGCAATGGTT-AGTAATAGAGTGAGCTTTGGAAAGCTCTGTAATACAGAACTA
389 ATTCTTTTAACCTGCAAT-GTTGAGTAATAGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTA
*
2798162 CCAGGTGATGCTATAGGACATACAGAA-AAATTGAAAGCCATATAATTTTCCTTA-T-T-A-A-A
453 CCAGCTGATGCTATAGGACATACA-AATAAATTGAAAGCCATATAATTTTCCTTATTATCAGACA
*
2798221 T-TACCGAT-TTTCATAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGAT
517 TATACCGATATTT-AGAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGAT
* * *
2798284 CTCAGTTCATAAGAAGCATTCATGGTATCACGGCTTCATAAGTTCAAATAGGATGTCTAATGTGT
581 ATCAGTTCATAAGAAGCATTCATGGCATCACGGCTTCATAAGGTCAAATAGGATGTCTAATGTGT
* *
2798349 TCCAACAGTACGATAAAATCATAATAGGTACACAAATCAAATGATAGTTCAATAAATCTCAGAAA
646 TCCAACAGTACGATAAAATAATAATAGGTACACAAATCAAATGACAGTTCAATAAATCTCAGAAA
* *
2798414 TCATACTGTAGTGGAGATTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTAAGGGAACAT
711 TCATACTGTAGTGAAGATTTTTAAACTCGTATTTAAAACCATCGTATAAAGAACTAAGGGAACAT
* * * * *
2798479 CTTAGGGCCAGAGAGCCTACCCATGAAAGTTCAGAGCCACGGGGCCTAATAAGAACACATCTTAG
776 CTTAGGGCCAGAGAGCCTACCCAAGAAAGTTCAGAGACACGGAGCCCAATAAGAACACATCTTAC
* *
2798544 GGCTACAGGGCCTACCCGAGAATGATCTGAGGGCCGAAGAGCCTACCTAAGAGTCACATTAGGTC
841 AGCTACAGGGCCTACCCGAGAATGATCTGAGGGCAGAAGAGCCTACCTAAGAGTCACATTAGGTC
*
2798609 CGTAAAAATTTTCCAGCTTGATCAGAGA-TATACTTTACAAATCTATATCTC
906 CATAAAAATTTTCCAGCTTGATCAGA-ACTATACTTTACAAATCTATATCTC
* * * *
2798660 CAAGATACAGTTTATACAGTGATACAAATCCTTAAGCCATCACCGTTAAGTCGGTGCATCCAAAA
1 CAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAA
*
2798725 AACAGTAACCATAGATTTCAGTATACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCC
66 AACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTAACCCGATCC
* * *
2798790 GATCTGGAGTGTCACATTAGGGCCACAGAAGTGACTCACCG
130 GATCTGGAGTATCACATTAGGGCCACCGGAGTGACTCACCG
2798831 AAGTAACTCA
Statistics
Matches: 1027, Mismatches: 88, Indels: 22
0.90 0.08 0.02
Matches are distributed among these distances:
950 9 0.01
951 538 0.52
952 3 0.00
953 1 0.00
954 1 0.00
955 1 0.00
958 1 0.00
959 456 0.44
960 17 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (956 bp):
CAAGATACAATTTATACAGTGATACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAA
AACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTAACCCGATCCG
ATCTGGAGTATCACATTAGGGCCACCGGAGTGACTCACCGTAAAAATAGCGAAAAATTTAAAACT
TTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAATAAAAGTTATCAGTATTTGA
AATAAAATAGATTTTCAGACTCATATATAAAACAAAATACAACTACAAGCCCCCTAATCACATGC
ACCATACTCTGCAAGCAACGCCAGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAAT
TCTTTTAACCTGCAATGTTGAGTAATAGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCA
GCTGATGCTATAGGACATACAAATAAATTGAAAGCCATATAATTTTCCTTATTATCAGACATATA
CCGATATTTAGAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATATCAG
TTCATAAGAAGCATTCATGGCATCACGGCTTCATAAGGTCAAATAGGATGTCTAATGTGTTCCAA
CAGTACGATAAAATAATAATAGGTACACAAATCAAATGACAGTTCAATAAATCTCAGAAATCATA
CTGTAGTGAAGATTTTTAAACTCGTATTTAAAACCATCGTATAAAGAACTAAGGGAACATCTTAG
GGCCAGAGAGCCTACCCAAGAAAGTTCAGAGACACGGAGCCCAATAAGAACACATCTTACAGCTA
CAGGGCCTACCCGAGAATGATCTGAGGGCAGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAA
AAATTTTCCAGCTTGATCAGAACTATACTTTACAAATCTATATCTC
Found at i:2813152 original size:953 final size:950
Alignment explanation
Indices: 2804102--2815967 Score: 18538
Period size: 952 Copynumber: 12.5 Consensus size: 950
2804092 TAGATAAATT
*
2804102 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCAAG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
*
2804167 GCTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATC-TAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2804231 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTATAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
*
2804296 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTATCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
* *
2804361 GGAGCCACGGGGCCTACTAAGAACACATCTGAGGGCCACAAGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
*
2804426 GCCGAAGAACCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* *
2804491 CTTTACAAATCTATATCTACAAGATAGAGTTTATACAGTGATACAAATCCATAAGCCATCACCGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* * * * *
2804556 TAAGTCGGTGCATCCAAAAAATAGTAATCATACATTTCAGAGTACCATGTGTTAAAACAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
** * * *
2804621 CAATTTTTTTAACCCGATCTGATCCAGAGTGTCACATTAGGGCCACCGTAACGACTCACCATAAA
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
* * * * * * *
2804686 AATAGCGGAAAATTTAAAACTTTTCATAAAAATTTTAACCTCATAAAATTATTTATGCGTAGAAA
585 AATAGC-GAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
*
2804751 ATAAAAGTTATCATTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
*
2804816 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAGAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
* * *
2804881 CGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATAAAGTGAGCTTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
* * * * * * * * *
2804946 CTCTGCAATATAGAGCTACAATGTGATTCTATAGGACATGTAGATAAATTGAAATCCATATAATT
844 CTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATT
* *
2805011 TT-CTATATTAAATTATCGGTGTTCAGAATAATCTAGGGTTCC
909 TTCCT-TATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* * *
2805053 AATGGTAGTTCATCAAGCAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCTTGGTATCACG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
* * *
2805118 GCTTAATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTATGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2805183 CTAATCAAATGATAGTTCAATAAATCTCATAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
* **
2805248 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTTGGGCCAAAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
* * *
2805313 GGAGCCACAGGGCCTACTAAGAACACATCTTAGTGCCACATGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* * * * *
2805378 TCCGAAGATCCTACCTAAGTGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGCTGTA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* * * * *
2805443 CTTTACAAATCTGTTTCTCCAAGGTATAGTTTATACAATGATACAAATCCATAAGCCATCACTGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCAC-GT
* * *
2805508 TAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTTAGTGTACCACATGTTAAAACAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
* * * *
2805573 TAATTTTTTTAACCCAATCTGATCTGGAGTGTCACATTAGGTCCACCGGAGTGACTCACCGTAAA
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
** * * * *
2805638 AATAATGAAAAATTTAAAACTTTTCTTAAAGCTTGTAAACTCA-AAACTT-TTTATGAGAACAAA
585 AATAGCG-AAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
* *
2805701 ATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTTAGACTCATATATAAAACAAAATACAATT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
* ***
2805766 ACAAGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGGTTGAAAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
* * * * *
2805831 CGATAGCTGCATTGTTACAATTATTTTAACCTGCAATGGTCAGTAATGGAGTGAACTTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
* **
2805896 CTCTGTAATACATAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATT
844 CTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATT
**
2805961 TTCCTTATTGAATTAGACATATACTTGTTTTCAGAATAATCTAGGGTTCC
909 TTCC---TT--ATTA-A-AT-TACCGGTTTTCAGAATAATCTAGGGTTCC
* *
2806011 AATGGTAGTTCATCAAGTAGAAGTTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
* * * *
2806076 GTTTCATAAGGTCGAAAAGGATGTCTAATGTGTTCCAACAGTACGATAAATTCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
* *
2806141 CTAATCAAATGATAGTTCAATAAATCTGAGAAATCATACTGTAGTGGAGTTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
2806206 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
* ** **
2806271 GGGGATACGGGGCCTACTTAA-AACACATCTTAGGGTTACA-GGCCTACCCGAGAATGATCTGAG
261 GGAGCCACGGGGCCTAC-TAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAG
* * * * *
2806334 GGCCGAACAGCCTACCTAAGAGTCACATTAGGTTCATAAAATTTTTCCAGCTTGATCAGAGCTGT
325 GGCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTAT
* * * *
2806399 ACATTACAAATCTATATCTCCAAGATACAATTTATATAGTGATACAAATCCATAAGCCATCACTT
390 ACTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCAC-G
* * *
2806464 TTAAGTCGATGCATCCATAAAACAGTAACCATAGATTTCAGTGTACCACTTGTTAAAACAATAAA
454 TTAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAA
** * *
2806529 AC-ATTTTTTTAACCCGATCCAATCTGGAGTGTCACATTTGGGCCACCGGAGTGACTCACCGTAA
519 ACAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAA
*
2806593 AAATAGCGAAAAATTT-AAAATTTTCGTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
584 AAATAGCG-AAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAA
*
2806657 AATAAAAGTTATTAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAAT
648 AATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAAT
* ** * * *
2806722 TACAAGCCCCCTAATCACATGTATTATACTCTGCAAGTAACGGCGGAAAAACTCCCTTATTGATC
713 TACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATG
* * *
2806787 TCGATAGCTGCACTGGTACAATTCTTTTAACCTGTAATGGTCAGTAATAGAGTGAGCTTTGGAAG
778 TCGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAA
* *
2806852 GCTCTGAAATACAAAACTATCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
843 GCTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
2806917 TTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
908 TTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* *
2806960 AACGGTAGTTCATCAAGTAAAAGCTATAAAGATCTCAGTTCATAAGAAACATTCATGGTATCACG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
*
2807025 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCTAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
* *
2807090 CTAATAAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAATGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
2807155 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
2807220 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* * * * * *
2807285 TCCGAAGATCCTACCTCAGAGTCACATTAGGTCCATAAAAATTTTCCAACATGATCAGAGCTGTA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* * * *
2807350 CTTTACAATTCTGTATCTTCAAGATATAGTTTATACAGTGATAC-AA---AT-----A-CA---T
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCACGTT
* *
2807402 AAG-C----CAT----AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAAT
456 AAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAAC
* * *
2807458 AA-TTTTTTAACCCGATCCGATATGGAGTGTCACATTAGGGGCACCGGAGCGACTCACCGTAAAA
521 AATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAAA
* *
2807522 ATAGCGGAAATTTTAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
586 ATAGCGAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
* * *
2807587 AAAAGTTATCAGTATTTGAAATAAAATAGATTTTCATAATCATATATAAAACAAAATACAATTAC
651 AAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATTAC
* *
2807652 AAGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAGAAACTCCCTTATTGATGTCG
716 ATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCG
* *
2807717 ATAGCTGCACTTGTACAATTATTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
781 ATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
2807782 CTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
846 CTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
2807847 CCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
911 CCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
*
2807887 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAACATTCATGGTATCACG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
*
2807952 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCTAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2808017 CTAATAAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
2808082 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
* *
2808147 GGAGCCACGGGGCCTACTAAGAACACATCTTAGAGCCACAGGGCCTACCCGAAAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
2808212 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
*
2808277 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTCATACAAATCCATAAGCCATCATCGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* * *
2808342 TAAGTCGGGGCATCCAAAAAACAGTAACCATAGATTTCAGAGTACCACGTATTAAAACAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
* * * *
2808407 CAATTTTTTTAACCCAATCTGATCTAGAGTGTCACATTAGGGCCACTGGAGCGACTCACCATAAA
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
* * * *
2808472 AATAGCGGAAAATTTAAAAAATTTCTTAAAACTTTTAAACTCATAAAATTATTTATGCGAACAAA
585 AATAGC-GAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
* *
2808537 ATAAAAGTTATCATTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAACT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
* * * *
2808602 ACATGCCCCCTAATCACATGTGCCATACTCTGCAGGTAACGCCAGAAAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
*
2808667 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAACTTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
*
2808732 CTCTGTAATACAAAACTACCAAGGTGATGCTATAGGACAAATAGATAAATTGAAAGCCATATAAT
844 CTCTGTAATACAAAACTACC-AGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
* *
2808797 TTTCCTTATTAGATTA-CGGCTTTCAGAATAATCTAGGGTTCC
908 TTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* * **
2808839 AACAGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCTTG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
2808904 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
* *
2808969 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATATTGTAGGGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
2809034 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
2809099 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* * * * *
2809164 TCCGAAGATCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAACATGATCAGAGCTGTA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* * *
2809229 CTTTACAAATATGTATCTCCAAGATATAGTTTATACAGTGATAC-AA---AT-----A-CA---T
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCACGTT
* *
2809281 AAG-C----CAT----AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAAT
456 AAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAAC
* *
2809337 AATTTTTTTAACCCGATCCGATATGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAAA
521 AATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAAA
* *
2809402 ATAGCGGAAATTTTAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
586 ATAGCGAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
* *
2809467 AAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGAATCATATATAAAACAAAATACAATTAC
651 AAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATTAC
* *
2809532 AAGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAGAAACTCCCTTATTGATGTCG
716 ATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCG
* *
2809597 ATAGCTGCACTTGTACAATTCTTTTAACCTACAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
781 ATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
2809662 CTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
846 CTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
2809727 CCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
911 CCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
*
2809767 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATTAGAAGCATTCATGGTATCACG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
2809832 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2809897 CTAATCAAAAGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
*
2809962 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTTAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
*
2810027 GGAGCCACGGGGCATACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* *
2810092 GCTGAAGAGCCTACCTAAGAGTCACATTAGGACCATAAAAATTTTCCATCTTGATCAGAGCTATA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
*
2810157 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTCATACAAATCCATAAGCCATCATCGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* * * * * *
2810222 TAAGTCGGGGCATCCAAAAAATAGTAACCATAGATTTAAGAGTACCACGTATTAAAGCAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
* * *
2810287 CAA-TTTTTTAACCCGATCTGATCTAGAGTGTCACATTAGGGCCACCGGAGCAACTCACCATAAA
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
* * *
2810351 AATAGCGGAAAATTTAAAAAATTTCTTAAAACTTTTAAACTCATAAAATTATTTATGCGTACAAA
585 AATAGC-GAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
*
2810416 ATAAAAGTTATCATTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
* * * * *
2810481 ACATGCCCCCTAATCATATGTGCCATACTCTGCAGGTAACGCCAGAAAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
*
2810546 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGATTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
2810611 CTCTGTAATACAAAACTACCAAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
844 CTCTGTAATACAAAACTACC-AGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
* * *
2810676 TTTCCTTATTAGATTACCGGCTTTCAGAATAATATAGGGTTCC
908 TTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* * *
2810719 AACAGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCATG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
2810784 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
* * *
2810849 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATATTGTAGGGGATCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
* * *
2810914 TTAAAACCATCGTATAAAGACCTAAGGGAAAATCTTAGGGTCTAAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
2810979 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* * * * *
2811044 TCCGAAGATCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAACATGATCAGAGCTGTA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* * *
2811109 CTTTACAATTCTGTATCTCCAAGATATAGTTTATACAGTGATAC-AA---AT-----A-CA---T
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCACGTT
* *
2811161 AAG-C----CAT----AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAAT
456 AAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAAC
* *
2811217 AATTTTTTTAACCCGATCCGATATGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAAA
521 AATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAAA
* *
2811282 ATAGCGGAAATTTTAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
586 ATAGCGAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
* * * *
2811347 AAAAGTTATCAGTATTTGAAATAAAATAGATTTTCATAATCATATATAAAACAAAACACAATTAC
651 AAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATTAC
*
2811412 ATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAGAAACTCCCTTATTGATGTCG
716 ATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCG
*
2811477 ATAGCTGCACTTGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
781 ATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
*
2811542 CTGTAATACAAAACTATCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
846 CTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
*
2811607 CCTTATTAAATTACTGGTTTTCAGAATAATCTAGGGTTCC
911 CCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
*
2811647 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCATG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
*
2811712 GCTTCATAAGGTTGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2811777 CTAATCAAATGATAGTTCAATAAATCTCACAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
*
2811842 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTTAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
*
2811907 GGAGCCACGGGGCCTACTAGGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
*
2811972 GCCGAAGAGCCTACCTAAGAGTCACATTAGGACCATAAAAATTTTCCATCTTGATCAGAGCTATA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
*
2812037 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTCATACAAATCCATAAGCCATCATCGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* * * *
2812102 TAAGTCGGGGCATCCAAAAAATAGTAACCATAGATTTCAGAGTACCACGTATTAAAACAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
* * *
2812167 CAATTTTTTTAACCCGATCTGATCTAGAGTGTCACATTAGGGCCACCGGAGCAACTCACCATAAA
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
* * *
2812232 AATAGCAGAAAATTTAAAAAATTTCTTAAAACTTTTAAACTCATAAAATTATTTATGCGTACAAA
585 AATAGC-GAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
* * *
2812297 ATAAAAGTTATCATTATTTGAAATAAAACAGATTTTCAGACTCATATATTAATCAAAATACAATT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
* * *
2812362 ACATGCCCCCTAATCACATGTGCCATACTCTGCAAGTAACGCCAGAAAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
2812427 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
2812492 CTCTGTAATACAAAACTACCGAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
844 CTCTGTAATACAAAACTACC-AGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAAT
*
2812557 TTTCCTTATTAAATTACCGGCTTTCAGAATAATCTAGGGTTCC
908 TTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* * * * *
2812600 AACAGTAGTTCATCAAGTATAAGCTATAAAGATCTTAGTTCATAAGAAGCATTCATAGTATCATG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
*
2812665 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAATAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
2812730 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
2812795 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
* *
2812860 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTTCCCGAGAATAATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* *
2812925 GCCGAAGAGCCTACCTAAAAGTCACATTAGGTCCATAAAAAATTTCCATCTTGATCAGAGCTATA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* * *
2812990 CTTTACAAATCTATATCTCTAAGATACAGTTCATACAGTCATACAAATCCATAAGCCATCATCGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* * * * * *
2813055 TAAGTCGGGGCAACAAAAAAATAGTAACCATAGATTTCAGAGTACCACGTATTAAAACAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
* * *
2813120 CAATTTTTTTAACCCGATCCGATATGGAGTGTCACATTAAGGCCACCGGAGCGACTCACCGTAAA
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
* *
2813185 AATAGCGGAAAATTTAAAAATTTTCTTAAAACTTTTAAACTCATAAAATTATTTATGCGTACAAA
585 AATAGC-GAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
* *
2813250 ATAAAAGTTATCCGTATTTGAAATAAAATAGATTTTCAGACTCATATATAAAACAAAATACAATT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
* *
2813315 ACTTGCCCCCTAATCACATGTGCCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
*
2813380 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGTTCAGTAATAGAGTGAGCTTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
2813445 CTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATT
844 CTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATT
* *
2813510 TCCCTTATTAAATTACCGATTTTCAGAATAATCTAGGGTTCC
909 TTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* * * * *
2813552 AATGGTAGTTCATCAAATAGAAGCTATAAAGATCTCAGTTCCTAAGAAGCATTCATGTTATCATG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
* *
2813617 GCTTCATAAAGTCGAATATGATGTCTAATGTGTTCCAACAGTATGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2813682 CTAATCAAATGATAGTTTAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
* *
2813747 TTAAAACCATTGTATAAAGACCTAAGGGAATATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
2813812 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* *
2813877 GCCGAAGAGCCTTCCTAAGAGTCACATTAGGTCCAGAAAAATTTTCCATCTTGATCAGAGCTATA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* *
2813942 CTTTACAAATCTATATCTCCAAGATACAGTTTATATAGTAATACAAATCCATAAGCCATCACCGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* * *
2814007 TAAGTCTGTGCATCCAAAAAACAGTAACCATAGATTTCAGAGTACCACGTGTTAAAATAATAAAA
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAA
* * * * * *
2814072 CAATTTTTTTAACCCGATCTAATCTAGAGTGTCATATTAGGGCCACCGGAGTGACTCACCATAAT
520 CAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAA
*
2814137 AATAGCGAAAAATTTAAAAATTTTCTTAAAACTTTTAAACTCATAAAATTATTTATGAGTACAAA
585 AATAGCG-AAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAA
* *
2814202 ATAAAAGATATCATTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
649 ATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATT
* * *
2814267 AAATACCCCC-AATCACATGTACCATACTCTGCAAGCAACGCCAGAAAAACTCCCTTATTGATGT
714 ACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGT
* * * * *
2814331 CGATAGCTACACTGGTACATTTTTTTTAACCTGCAATGGTGAGTAATAAAGTGAGCTTCGGAAAG
779 CGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAG
* * * * * ** * * *
2814396 CTCTGCAATATAGAACTACCATGTGATTCTATAGGACATGCAAATAATTTGAAAGCCATATAAAT
844 CTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATT
* *
2814461 TTCCTTATTGAATCAGACATATACCAGTTTT-TGAAATAATCT-GAGGTTCC
909 TTCCTTA-T---T-A-A-AT-TACCGGTTTTCAG-AATAATCTAG-GGTTCC
* * * * *
2814511 AATGGTAGTTTATCAAGTAGAAGCTATAAAGATCTCAGTTAATAATAAGCATTCATGGTATCACA
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
* * * *
2814576 GTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCTAACAGTACGATAAAATCATAATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
* * * *
2814641 CTAATCAAATGATAGTTCAATAAATCTTAGAAATCATACTATAGTGGAACTTTTTAAACTCATAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
*
2814706 TTAAAACCATCGTATAAAGAGTTAATCC-AAGGGAACATCTTAGGGCCTGAGACCCTACCCAAGA
196 TTAAAACCATCGTAT-AA-AG---A-CCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGA
* * * *
2814770 AAGTTTGGGGCCACGGGGCCTACCTAAGAACACATCTTAGGGCCGCAGGGTCTACCCGAGAATGA
255 AAGTTCGGAGCCACGGGGCCTA-CTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGA
* * * * * * * * *
2814835 TCTCAGGGTCGTAGAGCCTATCTAAGAGTCACATGATGTTCATAAAAATTCTCCAGCTTGATCAG
319 TCTGAGGGCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAG
* * * * * *
2814900 AGTTGTACTTTACAATTTTGTATCTCCAAGATACAGCTTATACAGTGATACAAATCCATAAGCCA
384 AGCTATACTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCA
* * *
2814965 TCACTGTTAAGTCGGTGCATCCAAAAAATACTAACCATAGATTTCAGTGTACCACATGTTAAAAC
449 TCAC-GTTAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAAC
* * * ** * *
2815030 AATAAAACAA--ATTTTAACCCAATCTGATCTGGTGTGTCACATTAGGGCCACTAGAGCGTCCCA
513 AATAAAACAATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCA
* * *
2815093 CCGTAAAAATAACGGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATTA
578 CCGTAAAAATAGC-GAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGA
* * *
2815158 GTACAAAATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACACAAATAT-AAA-AAAA
642 GTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAA
* *
2815221 TACAATTAGATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTA
707 TACAATTACATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTA
* *
2815286 TTGATGTCGATAGCTGCACTGGTACAATTCATTTAACCTACAATGGTCAGTAATAGAGTGAGCTT
772 TTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTT
* * * * *
2815351 CGGAAAGATCTGTAATACAGAACTACCAGGTGATGCTATAGGATATACAGATAAATTGAAATCCA
837 CGGAAAGCTCTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCA
*
2815416 TATAATTTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTTC
902 TATAATTTTCCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
* * *
2815465 AATGGTAGTTCATCAAGAAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACG
1 AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
* * *
2815530 GCTTCATAATGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATCATCATAGGTACA
66 GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
*
2815595 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTAGTAT
131 CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
* *
2815660 TTAAATCCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAATTTC
196 TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
* * **
2815725 AGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCAAGAATGATCAAAGG
261 GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
* * * *
2815790 TCCGAAGATCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAACTTGATCAGAGCTCTA
326 GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
* * * * *
2815855 CTTTACAATTCTGTATCTCCAAGATATATTTTATACAGTGATACAAATCCATAAGCCATCATTGT
391 CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCA-CGT
* *
2815920 TAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTTAGTGTACCAC
455 TAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCAC
2815968 ATTAGGGACA
Statistics
Matches: 10055, Mismatches: 738, Indels: 247
0.91 0.07 0.02
Matches are distributed among these distances:
926 6 0.00
927 920 0.09
928 1191 0.12
929 411 0.04
930 62 0.01
931 5 0.00
932 4 0.00
933 6 0.00
935 1 0.00
936 5 0.00
937 6 0.00
938 12 0.00
940 2 0.00
941 5 0.00
942 13 0.00
943 4 0.00
946 5 0.00
947 6 0.00
948 209 0.02
949 361 0.04
950 477 0.05
951 766 0.08
952 2667 0.27
953 976 0.10
954 218 0.02
955 33 0.00
956 79 0.01
957 460 0.05
958 305 0.03
959 215 0.02
960 2 0.00
961 22 0.00
962 174 0.02
963 150 0.01
964 57 0.01
965 220 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (950 bp):
AACGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACG
GCTTCATAAGGTCGAATATGATGTCTAATGTGTTCCAACAGTACGATAAAATCATAATAGGTACA
CTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTAT
TTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTC
GGAGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTGAGG
GCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTATA
CTTTACAAATCTATATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCATCACGTT
AAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTCAGTGTACCACGTGTTAAAACAATAAAAC
AATTTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCCACCGGAGCGACTCACCGTAAAA
ATAGCGAAAATTTAAAAATTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAT
AAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATTAC
ATGCCCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCG
ATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTCAGTAATAGAGTGAGCTTCGGAAAGCT
CTGTAATACAAAACTACCAGGTGATGCTATAGGACATATAGATAAATTGAAAGCCATATAATTTT
CCTTATTAAATTACCGGTTTTCAGAATAATCTAGGGTTCC
Found at i:2817959 original size:957 final size:957
Alignment explanation
Indices: 2815965--2818324 Score: 4082
Period size: 957 Copynumber: 2.5 Consensus size: 957
2815955 TTTAGTGTAC
* * * * *
2815965 CACATTAGGGACACCGGAGTGACTCATCGTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAGC
1 CACATTAGGGCCACCGGAGCGACTCACCGTAAAAATAACGGAAAATTTAAAA-TTTTCTTAAAAC
* * *
2816030 TTGTAAAGTTATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAATAGA
65 ATGTAAAATCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAATAGA
2816095 TTTTCAGACTC--ATATAAAACAAAATAAAATTACAAGCCCCCTAATCACATGTATCATACTCTG
130 TTTTCAGACTCATATATAAAACAAAATAAAATTACAAGCCCCCTAATCACATGTATCATACTCTG
* *
2816158 CAAGCAATGCCTGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAATTCTTTTAACCT
195 CAAGCAACGCCCGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAATTCTTTTAACCT
2816223 GCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATTCATAACTACCAGGTGATGCCAT
260 GCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATTCATAACTACCAGGTGATGCCAT
*
2816288 AGGACATGCAGATAAATTTAAAGCCATACAATTTTCCTTATTGAATCAGACATATACCGGTTTTC
325 AGGACATGCAGATAAATTTAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTC
2816353 GGAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGA
390 GGAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGA
* * *
2816418 AGTTTTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAAAAGTACGAT
455 AGTATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCAAAAAGTACAAT
2816483 AAAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATAATGTAGTGG
520 AAAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATAATGTAGTGG
*
2816548 AGCTTTTTAAACTTGTATTTAAAACAATCATATAAAGACCTAAGGGAACATCTTAGGGCCTGATA
585 AGCTTTTTAAACTCGTATTTAAAACAATCATATAAAGACCTAAGGGAACATCTTAGGGCCTGATA
* *
2816613 GTCTACCTAAAAAAGTTTGGGGCCACGGGCCTACTTAGAACACATCTTAGGGCTATTGGGCCTAC
650 GTCTACCTAAAAAAGTTCGGGGCCACGGGCCTACTTAGAACACATCTTAGGGCTACTGGGCCTAC
* *
2816678 CCGAGAATGATCTGAGTGTCGAAGAGCCTAGCTAAGAGTCACATTAGGGTCATAAACAATTTCCA
715 CCGAGAATGATCTGAGTATCGAAAAGCCTAGCTAAGAGTCACATTAGGGTCATAAACAATTTCCA
2816743 GCTTGATCAGAGTTGTACATTACAAATCTGTATCTCCAAGATACAATTTATACAGTGATACAAAT
780 GCTTGATCAGAGTTGTACATTACAAATCTGTATCTCCAAGATACAATTTATACAGTGATACAAAT
* *
2816808 CCATAAGCCGTCACTGTTAAGTCGGTGCCATCATAAAATAGTAACCATAGATTTTAGTGTACCAC
845 CCATAAGCCGTCACTGTTAAGTCGGTGCCATCATAAAATAGTAACCATAGATTTCAGGGTACCAC
*
2816873 ATGTTAAAACAATAAAACAATTTTTTAACCCGATCCAATCTGGAGTGT
910 ATGTTAAAACAATAAAACAATTTTTTAACCCGATCCAATATGGAGTGT
* *
2816921 CACATTAAGGCCACCGGAGCGACTCACCGTAAAAATAATGGAAAATTTAAAATTTTCTTAAAACA
1 CACATTAGGGCCACCGGAGCGACTCACCGTAAAAATAACGGAAAATTTAAAATTTTCTTAAAACA
*
2816986 TGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAATAGAT
66 TGTAAAATCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAATAGAT
2817051 TTTCAGACTCATATATAAAACAAAATAAAATTACAAGCCCCCTAATCACATGTATCATACTCTGC
131 TTTCAGACTCATATATAAAACAAAATAAAATTACAAGCCCCCTAATCACATGTATCATACTCTGC
2817116 AAGCAACGCCCGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAATTCTTTTAACCTG
196 AAGCAACGCCCGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAATTCTTTTAACCTG
2817181 CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATTCATAACTACCAGGTGATGCCATA
261 CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATTCATAACTACCAGGTGATGCCATA
*
2817246 GGACATGCAGATAAATTTAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGATTTTCG
326 GGACATGCAGATAAATTTAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCG
*
2817311 GAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAAAAGCTATAAAGATCTCAGTTCATAAGAA
391 GAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
*
2817376 GTATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCAAAAAGTATAATA
456 GTATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCAAAAAGTACAATA
*
2817441 AAATCATAATAGGTACACTAGTCAAATGATAGTTCAATAAATCTCAGAAATCATAATGTAGTGGA
521 AAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATAATGTAGTGGA
*
2817506 GCTTTTTAAACTCGTATTTAAAACCATCATATAAAGACCTAAGGGAACATCTTAGGGCCTGATAG
586 GCTTTTTAAACTCGTATTTAAAACAATCATATAAAGACCTAAGGGAACATCTTAGGGCCTGATAG
* *
2817571 TCTACCTACAAAAGTTCGGGGCCACGAGGCCTACTTAGAACGCATCTTAGGGCTACT-GGCCTAC
651 TCTACCTAAAAAAGTTCGGGGCCACG-GGCCTACTTAGAACACATCTTAGGGCTACTGGGCCTAC
2817635 CCGAGAATGATCTGAGTATCGAAAAGCCTAGCTAAGAGTCACATTAGGGTCATAAA-AATTTTCC
715 CCGAGAATGATCTGAGTATCGAAAAGCCTAGCTAAGAGTCACATTAGGGTCATAAACAA-TTTCC
2817699 AGCTTGATCAGAGTTGTACATTACAAATCTGTATCTCCAAGATACAATTTATACAGTGATACAAA
779 AGCTTGATCAGAGTTGTACATTACAAATCTGTATCTCCAAGATACAATTTATACAGTGATACAAA
*
2817764 TCCATAAGCCGTCACTGTTAAGTCGGTG-CATCCATAAAATAGTAATCATAGATTTCAGGGTACC
844 TCCATAAGCCGTCACTGTTAAGTCGGTGCCAT-CATAAAATAGTAACCATAGATTTCAGGGTACC
2817828 ACATGTTAAAACAATAAAACAATTTTTTAACCCGATCCAATATGGAGTGT
908 ACATGTTAAAACAATAAAACAATTTTTTAACCCGATCCAATATGGAGTGT
* *
2817878 CATATTAGGGCCACCGGAGCGACTCACCGTAAAAATAGCGGAAAATTTAAAATTTTCTTAAAACA
1 CACATTAGGGCCACCGGAGCGACTCACCGTAAAAATAACGGAAAATTTAAAATTTTCTTAAAACA
* *
2817943 TGTAAAATCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGAT
66 TGTAAAATCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAATAGAT
* * *
2818008 TTTCAGACTCATAAATAAAACAAAATACAATTACAAG-CCCCTAATCACATGTACCATACTCTGC
131 TTTCAGACTCATATATAAAACAAAATAAAATTACAAGCCCCCTAATCACATGTATCATACTCTGC
* * *
2818072 AAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGTACTGGTACAATTCTTTTAACCTG
196 AAGCAACGCCCGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAATTCTTTTAACCTG
* * * * * * *
2818137 CGATGGTCAGTAATAGAGTGAGCTTCGGAATGCTCTGTAATACAAAACTACCAGGTGATGCTATA
261 CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATTCATAACTACCAGGTGATGCCATA
** * *
2818202 GGACATATAGATAAATTGAAAGCCATATAATTTTCCTTA-T---T-A-A-AT-TACCGGTTTTCA
326 GGACATGCAGATAAATTTAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCG
* *
2818259 GAATAATCTAGGGCTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTTAGTTCATAAGAA
391 GAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
2818324 G
456 G
2818325 CATCAAGTAG
Statistics
Matches: 1339, Mismatches: 60, Indels: 18
0.94 0.04 0.01
Matches are distributed among these distances:
948 73 0.05
949 2 0.00
950 1 0.00
951 1 0.00
952 1 0.00
955 85 0.06
956 233 0.17
957 915 0.68
958 28 0.02
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (957 bp):
CACATTAGGGCCACCGGAGCGACTCACCGTAAAAATAACGGAAAATTTAAAATTTTCTTAAAACA
TGTAAAATCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAATAGAT
TTTCAGACTCATATATAAAACAAAATAAAATTACAAGCCCCCTAATCACATGTATCATACTCTGC
AAGCAACGCCCGAAAAACTCCCTTATTGATGTCGATAGCTGCATTGGTACAATTCTTTTAACCTG
CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATTCATAACTACCAGGTGATGCCATA
GGACATGCAGATAAATTTAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCG
GAATAATCTAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
GTATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCAAAAAGTACAATA
AAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATAATGTAGTGGA
GCTTTTTAAACTCGTATTTAAAACAATCATATAAAGACCTAAGGGAACATCTTAGGGCCTGATAG
TCTACCTAAAAAAGTTCGGGGCCACGGGCCTACTTAGAACACATCTTAGGGCTACTGGGCCTACC
CGAGAATGATCTGAGTATCGAAAAGCCTAGCTAAGAGTCACATTAGGGTCATAAACAATTTCCAG
CTTGATCAGAGTTGTACATTACAAATCTGTATCTCCAAGATACAATTTATACAGTGATACAAATC
CATAAGCCGTCACTGTTAAGTCGGTGCCATCATAAAATAGTAACCATAGATTTCAGGGTACCACA
TGTTAAAACAATAAAACAATTTTTTAACCCGATCCAATATGGAGTGT
Found at i:2820244 original size:958 final size:960
Alignment explanation
Indices: 2818331--2828241 Score: 11614
Period size: 959 Copynumber: 10.2 Consensus size: 960
2818321 GAAGCATCAA
* *
2818331 GTAGTGGAGCTTTTTAATCTCGTATTTAAAACCATCGTATAAAGGCCTA-AGGGAACATCTTAGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATA-GGAACATCTTAGG
* *
2818395 GCCTGAGAGCCTACCCAAGAAAGTTCG-GAGCCACGGGGCCTA-CTAAGAATACATCTTAGGGCC
65 GCCTGAGAGCCTACCCAAGAAAGTTCGTGA-CCACGGGGCCTACCTAAGGACACATCTTAGGGCC
* * * * * ** * *
2818458 ACAGGGCCTACCCAAGAATGATTTGAGGGTCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATA
129 ATAGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA
* ** * *
2818523 AAAATTTTCCATCTTGATCAGAGCTATACTTTACAAATCTATATCTCCAAGATACAGTTTATACA
194 AAAATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACA
* * * *
2818588 ATGATACAAATACATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAACAGTAACAATAGATTT
259 GTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTT
* * * * *
2818653 CAGAGTACCACGTGTTAAAACAATATAACAATTTTTTTAACCTGATCTGATC-GAGAGTGTCAGA
324 CAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGATCTGATCTG-GAGTGTCACA
* * ** * **
2818717 TTAGAGCCACTGGAGTGACTCACCATAAAAATAGCAAAAAATTTAAAACTTTTCTTAAAACTTGT
387 TTAGGGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGT
* *
2818782 AAACTCATAAAATTATTTATAAGTACAAAATAAAAGATATCAGTATTTGAAATAAAACAGATTTT
452 AAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTT
2818847 CAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAA
517 CAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAA
* * * *
2818912 CAACGCAGAAAAAACTCCCTTATTGATTTTGATAGCTACACTGGTATAATT-TGTTTAACCTGCA
582 CAACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCT-TTTAACCTGCA
*
2818976 ATGGTGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATCGG
646 ATGGTGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGG
* *
2819041 ACATGCAGATAAATTGAAAGCCGTATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGA
711 ACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAA
*
2819106 ATAATCT-GGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCATTTCATAAGAAGC
776 ATAATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGC
* **
2819170 ATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATTTCTAATGTGTTCCATTAGTACGATAAA
841 ATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAA
* *
2819235 TTCATAATAGGTACACTTATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
906 ATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
* * * *
2819290 ATAGTGGAGCATTTTAAACTCGTATTTAAAACCATCATATAAATACCTATAGGAACATCTTAGGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* * **
2819355 CCTGAGAGCATACCCAAGAAAGTTTGTGACCACGGGGCCTACCTAAGGACACATCTTAGGAACAT
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
2819420 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
131 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
* * *
2819485 GATTTTCCAGCTTGATCAGAGCGATACTTTACAAATCTGTATCTCCAAAATACAGTTTATATAGT
196 AATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
* * *
2819550 GATACAAATCCGTAAGCCATCACCGTTAAGTTGGTGCATCCATAAAATAGTAACCATAGATTTCA
261 GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTTCA
* *
2819615 GTGTACCCCATGTTAAAATAATAAAACAATTATTTTAACCCGATCTGATCTGGAGTGTCACATTA
326 GTGTACCACATGTTAAAACAATAAAACAATT-TTTTAACCCGATCTGATCTGGAGTGTCACATTA
*
2819680 GGGCTACCGGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAA
390 GGGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAA
* * * * *
2819745 CACATAAAATTATTTATGAGTACAAAATAAAAGATATCAGTATTTGAAATAAAATAGA-TTTAAA
455 CTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAG
2819809 ACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACAA
520 ACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACAA
* **
2819874 CGCCGAAAAAACTCCCTTATTGATTTCGATAATTGCACT-GTATAATTCTTTTAACCTGCAATGG
585 CGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATGG
*
2819938 TGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATAGAGAACTACCAGGAGATACTATAGGACAT
650 TGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACAT
*
2820003 GCAGATAAAATGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATAA
715 GCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATAA
2820068 TCTGGGG-TCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTC
780 TCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTC
*
2820132 ATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAAAAGTACGATAAAATCA
845 ATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATCA
* * *
2820197 TAATAGGTACACTAATCAAATGATAGTTCAATAAATATTATAAATCATACT
910 TAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
* * * *
2820248 GTAGTGGAGCTTTTTAAACTCGAATTTAAAACCATCGTGTAAAGACCTATAGGAAAATATTAGGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* *
2820313 CCTGAGAGCTTACCCAAGAAAGTTCGTGACCACGGGGTCTACCTAAGGACACATCTTAGGGCCAT
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
* *
2820378 AGGGTCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAATAGTCACATTAGGTCCATAAA
131 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
* *
2820443 AATTTTCCAGCTTGATCAGAGCGGCACTTTACAAATCTGTATCTCCAAAATACAGTTTTTACAGT
196 AATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
* * * *
2820508 GATACAAATCCATAAGCCATAACCGTTAAATCGGTGCATCAAAAAAATAGTAACCATAGATTTAA
261 GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTTCA
2820573 GTGTACCACATGTTAAAACAATAAAACAA-----T-------T-T-A----G-G-G---C-----
326 GTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCTGGAGTGTCACATTAG
* **
2820610 --CT-CCAGAGTGACTCACCATAAAAATAGCAAAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
391 GGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
* * *
2820672 TCATAAAATTATTTATGAGTACAAAAT-AAAGTTATCATTATTTGAAATAAAACATATTTTTAGA
456 TCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGA
* ** *
2820736 CTCATATATAAAA-AAAATACAATTACATGCCCCCTAATCACATGTATCATACTCTGCAAGCAAC
521 CTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACAAC
* * *
2820800 GCTGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTACAATTCTTTTATCCTGCAATGGT
586 GCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATGGT
* * * *
2820865 GAGTAATAGAGTGAGCTTCGGAAAGCTCTGCAATACAGAACTACCAGGTGATGCTATAGGACATG
651 GAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACATG
** **
2820930 CAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAATTCACGAAATAAT
716 CAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATAAT
* * * * *
2820995 CTGAGGTTCAAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATTAGAAGCTTTCA
781 CTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA
* * * * *
2821060 TGGTATCACTGTTTCATTAGGTCGAATACGATGTCTATTGTGTTCCAACAGTACGATAAAATAAT
846 TGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATCAT
*
2821125 AATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGGAATCATACT
911 AATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
* *
2821175 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACTTATAGGAACATCTTAGAG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* * * ** * * * *
2821240 CCTGAGAGCCTACCCAAGAAAGTTCATGGCCGCCAGGCCTACCTAAGAACATATTTTAGGGCCAC
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
* * * * *
2821305 AGGGACTGCCCGAGAATGATTTCAAGGCCGCATAGCCTACCTAAGATTCACATTAGGTCCATAAA
131 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
* * * * *
2821370 TATTTTCCATCTTGATCAGAGCTGTACTTTCCAAATCTGTATCTCCAAGATACAGTTTATACAGT
196 AATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
*
2821435 GATACAAATCCATAAGCCATCACCGTTAAGTCGATGCATCCATAAAAA-AGTAACCATAGATTTC
261 GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCA-AAAAATAGTAACCATAGATTTC
* *
2821499 AGTGTACCCCATGTTAAAACAATAAAACAATTTTTTTAACTCGATCTGATCTGGAGTGTCACATT
325 AGTGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGATCTGATCTGGAGTGTCACATT
* *
2821564 AGGGCTACC-GTAGCGACTCACCATAAAAATAGCGAAAAATTTAAAAATTTTCTTAAAACTTGTA
389 AGGGCTACCAG-AGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTA
* *
2821628 AACTCATAAAATTATTTATGAGTACAAAATAAAAGATATCAGTATTTGAAAAAAAACAGA-TTTC
453 AACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTC
2821692 AGACTCATATATAAAA-AAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAAC
518 AGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAAC
* *
2821756 AACGCCGGAAAAACTCACTTATTGATTTCAATAGCTGCACTGGTATAATTCTTTTAACCTGCAAT
583 AACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAAT
* *
2821821 GGTGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAAAACTACCAGGATATACTATAGGAC
648 GGTGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGAC
* *
2821886 ATGCAGATAAATTGAAAGCCATATTATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAAT
713 ATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAAT
* * * *
2821951 AATATGGGGTTCTAATTGTAGTTCATCATGTACAAGCTATAAAGATCTCATTTCATAAGAAGCAT
778 AATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCAT
*
2822016 TCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTATTCCAACAGTACGATAAAAT
843 TCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAAT
*
2822081 CATAATAGGTACACTAATCAAATGATAGTTCAATAAATCACAGAAATCATACT
908 CATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
* ** *
2822134 ATAGTGGAGAATTTTAAACTCGTATTTAAAACCAACGTATAAAGACCTATAGGAACATCTTAGGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* * * *
2822199 CTTGAGAGCATACCCAAGAAAGTTCATGACCACGGGGCCTACCTAAGGACACATCTTAGGGACAT
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
* *
2822264 AAGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGTTCCATAAA
131 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCAT-AA
*
2822329 AAATTTT-CAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAA
195 AAATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAG
** * * *
2822393 TGATACATTTCTAT-AGCCATCACCGTTAAGTCGGTGCATCCAAAAAACAGTAACCATAGATTTA
260 TGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTTC
* * *
2822457 AGTGTACCACATGTTAAAATAATAAAACAATTTTTTAACCGGATCCGATCTGGAGTGTCACATTA
325 AGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCTGGAGTGTCACATTA
*
2822522 GGGCCT-CCAGAGCGACTCACCATAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAA
390 GGG-CTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAA
* *
2822586 ACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTGAAATAAAACAGATTTTTA
454 ACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCA
2822651 GACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACA
519 GACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACA
*
2822716 ACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCCCTGGTATAATTCTTTTAACCTGCAATG
584 ACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATG
* * *
2822781 GTGAGTAA-TGAAGTGAGCTTCGGGAAGCTCTGTAATACAGAACTACAAGGAGATACAATAGGAC
649 GTGAGTAATTG-AGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGAC
* * *
2822845 ATGCAAATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGAAAAATACCGGTTTTC-AGAA
713 ATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGA-AA
* * * *
2822909 TAATCTGGGGTTCTAATGGTAGTTCATCATGTACAAGCTATAAAGATCTCAATTTATATGAAGCA
777 TAATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCA
*
2822974 TTCATGGTATCACGGTTTCATAAGCTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAA
842 TTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAA
*
2823039 TCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCACACT
907 TCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
2823093 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* *
2823158 CCTGAGAGCCAACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACATATCTTAGGGCCAT
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
* * *
2823223 AGGGCCTACCCGAGAATGATCTGAAGACCGGATAGCCTACCAAAGAGTCACATTAGGTCCATAAA
131 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
*
2823288 AATTTTCCAGCTTGATCAGAGCGATACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
196 AATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
* * * * *
2823353 GATACAAATCCATATGCCATCACCGTTAAGTCGATGCATCTATAAAAA-AGTAACAATAGATTTT
261 GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCA-AAAAATAGTAACCATAGATTTC
* * *
2823417 AGTGTACCCCATGTTAAAACAATAAAACAATTTTTTAACCCAATCCGATCTGGAGTGTCACATTA
325 AGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCTGGAGTGTCACATTA
* *
2823482 GTGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACATGTAAA
390 GGGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAA
2823547 CTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAG
455 CTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAG
* * *
2823612 ACTCATATATAAAACAAAATACAATTACATG-ACCCTAATCATATGTACCATACTCTATAAGCAA
520 ACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACAA
*
2823676 CGTCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATGG
585 CGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATGG
2823741 TGAGTAA-TGAAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAG--ACTATAGGACA
650 TGAGTAATTG-AGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACA
*
2823803 TGC--ATAAATTGAAAGCCA-ATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATA
714 TGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATA
* * * *
2823865 ATCTGGGGTTCCAAAGGTAGTTCTTCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATT
779 ATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATT
* * * *
2823930 CATGTTATCACGGTTTCATAAGGTCGAATAGGATATCTAATGTGTTCTAACAGTATGATAAAAT-
844 CATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATC
*
2823994 ACTAATAAGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
909 A-TAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
*
2824047 GTAGTGGAGCTTTTTAAAGC-CGTATTTAAAACCATCGTATAAAGACCTA-AGGGAACATATTAG
1 GTAGTGGAGCTTTTTAAA-CTCGTATTTAAAACCATCGTATAAAGACCTATA-GGAACATCTTAG
*
2824110 GGCCTGAGAGCCTACCCAAGAAAGTTCGTGACCACAGGGCCTACCTAAGGACACATCTTAGGGCC
64 GGCCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCC
* * * * *
2824175 ACAGGGCGTACCCGAGAATGATCTCAAGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCGATC
129 ATAGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA
* * *
2824240 AAAATTTTCCAACTTGATTAGAGCGGTACTTTACAAATCTATATCTCCAAAATACAGTTTATACA
194 AAAATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACA
*
2824305 GTGATACAAATCCATAAGCCATCACCGTTAAGTTGGTGCATCCAAAAAATAGTAACCATAGATTT
259 GTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTT
* * * *
2824370 AAGTGTACCACATGTTTAAACAATAAAACAATTTTTTAACCCGATCCGATTTGGAGTGTCACATT
324 CAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCTGGAGTGTCACATT
* *
2824435 AGGGCCACCAGAGCGACTCACCATAAAAATAGCGGAATATTTAAAA-----CTTAAAA-TTGT--
389 AGGGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAA
* * * * *
2824492 ACTCATAAAATTATTTATGAGTAAAAAATAAAAGTTATAATTATTTGAAATAAAATAGATTTTTA
454 ACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCA
* * * * ** *
2824557 GACTCATATATAAAACAAAATAAAATTACATGCCCCCTAAGCGCATGTACCATACTATGCAAGCA
519 GACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACA
* * * * * *
2824622 ATGCCGGAAAAACTCCTTTATTGATGTCGATAGCTTCCCTGGTACAATTCTTTTAACCTGCAATG
584 ACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATG
* * * *
2824687 GTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAAAACTACCAGGTGATGCTATAGGACA
649 GTGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACA
** * *
2824752 ACCAGATAAATTGAAAGCGATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATA
714 TGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATA
* * * *
2824817 ATCTGGGGTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATT
779 ATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATT
* *
2824882 CATGGTATCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATC
844 CATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATC
* * * **
2824947 ATAATAGGTACACTAATCAAATGATAGTTCAGTTCCAATGGT-AGTTTATCA-A--
909 ATAATAGGTACACTAATCAAATGATAGTTCA-AT-AAAT-CTCAG-AAATCATACT
* ** * * * * * * *** *
2824999 GTA--GAAGCTATAATGATCTCAGT-TCATAAGAAGCATTCATGGTATCATGGTTTCATAAGG-T
1 GTAGTGGAGCT-TTTTAAACTC-GTAT-TTAA-AA-C---CATCGTATAAAGACCT-AT-AGGAA
* * * ** * ** * ** **
2825060 CGA--ATAGGATGTCT-AGTGTGTTCCAACAGTACGATAAAATCAT-AATA-GGTACACTAATCA
56 C-ATCTTAGG--GCCTGAGAGCCTACC--CA--A-GA-AAGTTCGTGACCACGGGGC-CT-A-C-
* * * * * ** * * **** * * * *
2825120 AATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGATCT-TTTTAAACACGTAT-TTAAA
108 -CT-A-AG---GACACATCTTAG--GGC---C-ATAG-GG-CCTACCCGAGA-ATG-ATCTCAAG
* **** * * * * * ** *
2825183 ACCTCCATATAAGGACCTATAGGAAT-ATC-TTAGGGCC-TGAGAGTCTACCCAAAAAAGTTTG-
157 ACC-GCATA-GCCTACCTA-A-GAGTCA-CATTAGGTCCATAAAAAT-TTTCC-----AGCTTGA
* * ** * *** *** * *** * *
2825244 TGGCCACCGGGC-CTACCTAAGAACACATCT-TAGGGCCATAGGGACTGCCCGAGA-A-TGATTT
211 T---CA--GAGCGGTA-CT--TTACAAATCTGTATCTCCA-AAATACAG-TTTATACAGTGA-TA
* * ** * ** *
2825305 CAAGACTGCAT-AGCC-T-ACC-TAAGAGTCACATTAG-GTCCATAAAAAT--TTTCC--AGCTT
265 CAA-A-TCCATAAGCCATCACCGTTA-AGT--CGGT-GCATCCA-AAAAATAGTAACCATAGATT
* * *** * * * * ** **
2825361 GATCAGGGCTGTACTTTACAAATCTGTATCTCCAA-GATAC-AGTTTATATA-GTGATACAAATC
323 --TCA--G-TGTAC----CACATGT-TA-AAACAATAAAACAATTTTTTA-ACCCGAT-CTGAT-
* ** * * *** * * * ** *
2825423 CAT-AAGCCATCATCATTAAGTCGGTTTATCCATAAAAAAGTAAACATAGATTTCAGTGTACCCC
374 C-TGGAG-TGTCA-CATT-AG--GG-CTA-CCA-GAGCGACTCACCATA-A----A-AATA--GC
* ** * * * * * * *
2825487 ATGTTAAAACAATAAAACATTTTTTTTAACCCCGATCTGATCTAGAA-T-GTCACATTAGGTCTA
422 --G-GAAAA-TTTAAAAC--TTTTCTTAA-----AACT--TGTA-AACTCATAAAATTA--TTTA
* * ** * * ** * * ***
2825550 CCGGAGCGACTCACCATAAAA-ATAGCGAAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCAT
471 --TGAG-TA--CAAAATAAAAGTTATC--AGTATTTGAAA-------TAAAAC-AG-ATTTTC--
* * * * ** * ****** * * ** *
2825614 AAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGAT-TTTCAGACTC
518 AGACTCATATAT-AAAACAAAATACAA-TTA-C---ATGCCCCCT-AATCACATGTACCATACTC
***** * * ** * * *
2825678 ATATATAA-AACAAAATACAATTACATGTCCCCTAATCACATGTACCATACACTATAAGCAACGC
576 -TATA-AACAACGCCGGA-AA--A-A-CT-CCCTTAT-TGAT-TTCGATA-GC--T--GC-A--C
* * * * * ** * *
2825742 CGGAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACATGCAATGGTGA
623 TGG------T--ATAATT-CTTT---TA-A--C-CT-G--CAA---TGGT--GA-GTAAT--TGA
* *
2825807 GTAATGGAGTGAGCTTCGGAAAGCTCTGTAATA-ATGAACTACCAGGAGATACTATAGGACATGA
661 GTGA--------GCTTCGGAAAGCTCTGTAATACA-GAACTACCAGGAGATACTATAGGACATGC
* * *
2825871 ATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGATATATACCGGTTTTCGGAATAATC
717 AGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATAATC
*
2825936 TGGGGTTCTAATTGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
782 TGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
* * * * *
2826001 AGTATCACGGTTTCATAAGGTCGAATAGGATATTTAGTGTGTTCCAACAGTACGATAAATTCATA
847 GGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATCATA
*
2826066 ATAGGAACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
912 ATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
*
2826115 GTAGTGAAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGG---A----A---
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
*
2826170 -C----A---T---------A-TT--TGACCACGGGGCCTACCTAAGGACATATCTTAGGGCCAT
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
* * *
2826215 AGGGCCTATCCGAGAATTATCTCATGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
131 AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
* *
2826280 AATTTTCCAGCTTGATCAGAGTGGTACTTTACAAATCTGTATCTCCAAAATACAATTTATACAGT
196 AATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
* * * *
2826345 GATACAAATCCATAAGCCATCATCGTTAAGCCGGTGCATCCAAAAAATAGTAACAATAGATTTTA
261 GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTTCA
* *
2826410 GTGTACCACATGTTTAAACAATAAAACAATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAG
326 GTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCTGGAGTGTCACATTAG
* * *
2826475 GGCCACCAGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAATTTTTCTTAAAACTTGTAAAC
391 GGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
* * *
2826540 TCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTTAAATAAAACAGACTTTCAGA
456 TCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGA
* * * ** *
2826605 CTCGTATATAAAA-AAAATACAATTACATG-CCCCTAAGCACATGTACCATACTATGCAAGCAAC
521 CTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACAAC
* * *
2826668 GCTGGAAAAACTCCCTTATTGATGTCGATAGCTGC-CTTGGTACAATTCTTTTAACCTGCAATGG
586 GCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCAC-TGGTATAATTCTTTTAACCTGCAATGG
* * * *
2826732 TGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACTAGGTGATGCTATAGGACAT
650 TGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACAT
* * * *
2826797 ACAGATAAATTGAAAACGATATAATTTTCCTTATTGAATCAGACATATACCGATTTTC-AGAATA
715 GCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGA-AATA
* * *
2826861 ATCAGGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATT
779 ATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATT
* * *
2826926 CAAT-GTATCATGGCTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAAT
844 C-ATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAAT
2826990 CATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
908 CATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
*
2827043 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATTGTATAAAGACCTATAGGAACATCTTAGGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* * * * ** * * *
2827108 ACAGGGAGCCTACTCAAGAAAGTTTATGGCCATC-GAGCCTACCTAAGAACACATCTTAGGGCCA
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCA-CGGGGCCTACCTAAGGACACATCTTAGGGCCA
* * *
2827172 CAGGGACTACCCGAGAATGATTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAA
130 TAGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAA
** *
2827237 AAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAG
195 AAATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAG
* *
2827302 TGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATTCATAAAAA-AGAAACCATAGATTT
260 TGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCA-AAAAATAGTAACCATAGATTT
* * * *
2827366 CAGTGTACCCCATGTTAAAATAATAAAATAATTTTTTTAACCCGATCTGATCTGTAGTGTCACAT
324 CAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGATCTGATCTGGAGTGTCACAT
* *
2827431 TAGGGCTACCTGAGCGACTCACCATAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTA
388 TAGGGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTA
2827496 AACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTC
453 AACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTC
* * *
2827561 AAACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATAATCTATAAGC
518 AGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAAC
* *
2827626 AACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTACACTGGTATAATTCTTTTAACTTGCAAT
583 AACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAAT
* * *
2827691 GGTGAGTAATGGAGTGAGCTTAGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAAGAC
648 GGTGAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGAC
* **
2827756 ATGCAGAT-AATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAATTTTC-AGAA
713 ATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGA-AA
* * *
2827819 TAATCTAGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATATCAGTTCATAAGAAGTA
777 TAATCTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCA
* * * * *
2827884 TTCATAGTATCACGGTTTCATAAGGTCGAATAAGATGTCTAGTATGTTCCAATAGTACGATAAAA
842 TTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAA
* *
2827949 TCATAATAGGTACACTAATCAAATGATAGTTCAGTAAATTTCAGAAATCATACT
907 TCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
* *
2828003 GTAGTGGAACTTTTTAAACTCGTATTTAAAACCATTGTATAAAGACCTATAGGAACATCTTAGGG
1 GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
* * * *
2828068 CCTGGGAGCCTACGCAAGAAAGTTCGT-AGC-CGTCGGGCCTACCTAAGAACACATCTTAGGGCC
66 CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACG--GGGCCTACCTAAGGACACATCTTAGGGCC
* *** *
2828131 ACAGAAACTACCCGAGAATGATTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA
129 ATAGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA
* **
2828196 AAAATTTTCCAGCTTGATAAGAGTTGTACTTTACAAATCTGTATCT
194 AAAATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCT
2828242 TCAAGATAAT
Statistics
Matches: 7657, Mismatches: 936, Indels: 717
0.82 0.10 0.08
Matches are distributed among these distances:
925 106 0.01
926 249 0.03
927 473 0.06
928 325 0.04
929 3 0.00
931 1 0.00
933 1 0.00
934 1 0.00
935 1 0.00
936 5 0.00
937 1 0.00
938 5 0.00
939 3 0.00
940 1 0.00
941 3 0.00
942 1 0.00
943 2 0.00
944 3 0.00
945 1 0.00
946 94 0.01
947 133 0.02
948 6 0.00
949 18 0.00
950 7 0.00
951 22 0.00
952 201 0.03
953 11 0.00
954 610 0.08
955 25 0.00
956 2 0.00
957 178 0.02
958 986 0.13
959 1891 0.25
960 1108 0.14
961 157 0.02
962 5 0.00
963 8 0.00
964 6 0.00
965 1 0.00
966 2 0.00
967 1 0.00
968 2 0.00
969 2 0.00
970 1 0.00
971 4 0.00
972 10 0.00
973 6 0.00
974 2 0.00
975 1 0.00
976 1 0.00
977 1 0.00
978 5 0.00
979 16 0.00
980 15 0.00
981 8 0.00
982 9 0.00
983 11 0.00
984 5 0.00
985 3 0.00
986 8 0.00
987 3 0.00
988 11 0.00
990 4 0.00
991 3 0.00
992 17 0.00
993 14 0.00
994 22 0.00
995 12 0.00
996 12 0.00
997 5 0.00
999 8 0.00
1000 8 0.00
1001 17 0.00
1002 9 0.00
1003 8 0.00
1004 4 0.00
1005 9 0.00
1006 6 0.00
1007 6 0.00
1008 5 0.00
1009 1 0.00
1010 3 0.00
1011 8 0.00
1012 1 0.00
1013 8 0.00
1015 5 0.00
1016 5 0.00
1017 3 0.00
1019 2 0.00
1021 3 0.00
1022 4 0.00
1023 5 0.00
1026 1 0.00
1027 8 0.00
1028 3 0.00
1029 1 0.00
1030 6 0.00
1032 2 0.00
1033 4 0.00
1034 4 0.00
1035 7 0.00
1036 9 0.00
1037 14 0.00
1038 2 0.00
1039 6 0.00
1040 1 0.00
1041 9 0.00
1042 12 0.00
1043 16 0.00
1044 21 0.00
1045 14 0.00
1046 17 0.00
1047 10 0.00
1048 2 0.00
1050 5 0.00
1051 1 0.00
1054 9 0.00
1055 13 0.00
1056 11 0.00
1057 6 0.00
1058 16 0.00
1059 17 0.00
1060 6 0.00
1061 2 0.00
1064 10 0.00
1065 10 0.00
1066 11 0.00
1068 1 0.00
1069 3 0.00
1070 2 0.00
1071 6 0.00
1072 2 0.00
1073 5 0.00
1074 3 0.00
1075 4 0.00
1076 5 0.00
1077 1 0.00
1078 1 0.00
1081 3 0.00
1087 1 0.00
1089 3 0.00
1090 3 0.00
1092 1 0.00
1093 2 0.00
1094 1 0.00
1096 1 0.00
1097 2 0.00
1098 2 0.00
1100 2 0.00
1103 2 0.00
1104 1 0.00
1105 1 0.00
1106 5 0.00
1108 5 0.00
1109 3 0.00
1110 2 0.00
1111 10 0.00
1113 5 0.00
1114 7 0.00
1115 4 0.00
1116 261 0.03
1117 7 0.00
1118 6 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (960 bp):
GTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGG
CCTGAGAGCCTACCCAAGAAAGTTCGTGACCACGGGGCCTACCTAAGGACACATCTTAGGGCCAT
AGGGCCTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
AATTTTCCAGCTTGATCAGAGCGGTACTTTACAAATCTGTATCTCCAAAATACAGTTTATACAGT
GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAAAAAATAGTAACCATAGATTTCA
GTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCTGGAGTGTCACATTAG
GGCTACCAGAGCGACTCACCATAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
TCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGA
CTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTATAAACAAC
GCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACCTGCAATGGT
GAGTAATTGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACATG
CAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATAAT
CTGGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA
TGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAATGTGTTCCAACAGTACGATAAAATCAT
AATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACT
Found at i:2825069 original size:154 final size:154
Alignment explanation
Indices: 2824824--2825131 Score: 616
Period size: 154 Copynumber: 2.0 Consensus size: 154
2824814 ATAATCTGGG
2824824 GTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATTCATGGTA
1 GTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATTCATGGTA
2824889 TCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
66 TCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
2824954 GTACACTAATCAAATGATAGTTCA
131 GTACACTAATCAAATGATAGTTCA
2824978 GTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATTCATGGTA
1 GTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATTCATGGTA
2825043 TCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
66 TCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
2825108 GTACACTAATCAAATGATAGTTCA
131 GTACACTAATCAAATGATAGTTCA
2825132 ATAAATCTCA
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
154 154 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (154 bp):
GTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATTCATGGTA
TCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
GTACACTAATCAAATGATAGTTCA
Found at i:2826862 original size:928 final size:929
Alignment explanation
Indices: 2824978--2828249 Score: 4513
Period size: 960 Copynumber: 3.4 Consensus size: 929
2824968 TGATAGTTCA
* * *
2824978 GTTCCAATGGTAGTTTATCAAGTAGAAGCTATAATGATCTCAGTTCATAAGAAGCATTCATGGTA
1 GTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATAGTA
*
2825043 TCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
66 TCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
* * *
2825108 GTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGATCTTTTTAAACA
131 GTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGAAGCTTTTTAAACT
* *
2825173 CGTATTTAAAACC-TCCATATAAGGACCTATAGGAATATCTTAGGGCCTGAGAGTCTACCCAAAA
196 CGTATTTAAAACCAT-CGTATAAAGACCTATAGG---A----A----C----A---T--------
* * *
2825237 AAGTTTGTGGCCACCGGGCCTACCTAAGAACACATCTTAGGGCCATAGGGACTGCCCGAGAATGA
234 -A--TTGTGACCACGGGGCCTACCTAAGAACACATCTTAGGGCCATAGGGACTACCCGAGAATGA
*
2825302 TTTCAAGACTGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAG
296 TTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAG
* *
2825367 GGCTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATATAGTGATACAAATCCATAAGCCA
361 AG-TGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCA
* **
2825432 TCATCATTAAGTCGGTTTATCCATAAAAAAGTAA-ACATAGATTTCAGTGTACCCCATGTTAAAA
425 TCATCGTTAAGTCGGTGCATCCATAAAAAAGTAACA-ATAGATTTCAGTGTACCCCATGTTAAAA
* * * * *
2825496 CAATAAAACATTTTTTTTAACCCCGATCTGATCTAGAATGTCACATTAGGTCTACCGGAGCGACT
489 CAATAAAACA-ATTTTTTAA-CCCGATCTGATCTGGAGTGTCACATTAGGGCTACCAGAGCGACT
2825561 CACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTAT
552 CACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTAT
2825626 GAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAA
617 GAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAA
*
2825691 AATACAATTACATGTCCCCTAATCACATGTACCATACACTATAAGCAACGCCGGAAAAACTCCCT
682 AATACAATTACATGCCCCCTAATCACATGTACCATA-ACTATAAGCAACGCCGGAAAAACTCCCT
*
2825756 TATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACATGCAATGGTGAGTAATGGAGTGAGC
746 TATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACATGCAATGGTGAGTAATGGAGTGAGC
*
2825821 TTCGGAAAGCTCTGTAATA-ATGAACTACCAGGAGATACTATAGGACATGA-ATATAAATTGAAA
811 TTCGGAAAGCTCTGTAATACA-GAACTACCAGGAGATACTATAGGACAT-ACAGATAAATTGAAA
* * * *
2825884 GCCATATAATTTTCCTTATTGAATCAGATATATACCGGTTTTCGGAATAATCTGGG
874 ACCATATAATTTTCCTTATTGAATCAGACATATACCGATTTTCAGAATAATCTGGG
* * *
2825940 GTTCTAATTGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATAGTA
1 GTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATAGTA
* * *
2826005 TCACGGTTTCATAAGGTCGAATAGGATATTTAGTGTGTTCCAACAGTACGATAAATTCATAATAG
66 TCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
*
2826070 GAACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGAAGCTTTTTAAACT
131 GTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGAAGCTTTTTAAACT
*
2826135 CGTATTTAAAACCATCGTATAAAGACCTATAGGAACATATT-TGACCACGGGGCCTACCTAAGGA
196 CGTATTTAAAACCATCGTATAAAGACCTATAGGAACATATTGTGACCACGGGGCCTACCTAAGAA
* * * * * *
2826199 CATATCTTAGGGCCATAGGGCCTATCCGAGAATTATCTCATGACCGCATAGCCTACCTAAGAGTC
261 CACATCTTAGGGCCATAGGGACTACCCGAGAATGATTTCAAGACCGCATAGCCTACCTAAGAGTC
*
2826264 ACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTGGTACTTTACAAATCTGTATCTCCAAA
326 ACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGT-GTACTTTACAAATCTGTATCTCCAAG
* *
2826329 ATACAATTTATACAGTGATACAAATCCATAAGCCATCATCGTTAAGCCGGTGCATCCA-AAAAAT
390 ATACAGTTTATACAGTGATACAAATCCATAAGCCATCATCGTTAAGTCGGTGCATCCATAAAAA-
* * * *
2826393 AGTAACAATAGATTTTAGTGTACCACATGTTTAAACAATAAAACAATTTTTTAACCCGATCCGAT
454 AGTAACAATAGATTTCAGTGTACCCCATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGAT
* *
2826458 CTGGAGTGTCACATTAGGGCCACCAGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAATTTT
519 CTGGAGTGTCACATTAGGGCTACCAGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTT
* *
2826523 TCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTTAAA
584 TCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAA
* * *
2826588 TAAAACAGACTTTCAGACTCGTATATAAAA-AAAATACAATTACATG-CCCCTAAGCACATGTAC
649 TAAAACAGATTTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTAC
* * *
2826651 CAT-ACTATGCAAGCAACGCTGGAAAAACTCCCTTATTGATGTCGATAGCTGC-CTTGGTACAAT
714 CATAACTAT--AAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCAC-TGGTATAAT
* *
2826714 TCTTTTAACCTGCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACTA
776 TCTTTTAACATGCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCA
* * *
2826779 GGTGATGCTATAGGACATACAGATAAATTGAAAACGATATAATTTTCCTTATTGAATCAGACATA
841 GGAGATACTATAGGACATACAGATAAATTGAAAACCATATAATTTTCCTTATTGAATCAGACATA
*
2826844 TACCGATTTTCAGAATAATCAGGG
906 TACCGATTTTCAGAATAATCTGGG
2826868 GTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA-ATGT
1 GTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATA-GT
* *
2826932 ATCATGGCTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATA
65 ATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATA
*
2826997 GGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAAC
130 GGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGAAGCTTTTTAAAC
* * *
2827062 TCGTATTTAAAACCATTGTATAAAGACCTATAGGAACATCTTAGGGACAGGGAGCCTACTCAAGA
195 TCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATATT-------GTGA-CC-A--C----
*
2827127 AAGTTTATGGCCATCGAGCCTACCTAAGAACACATCTTAGGGCCACAGGGACTACCCGAGAATGA
245 --------GG-----G-GCCTACCTAAGAACACATCTTAGGGCCATAGGGACTACCCGAGAATGA
2827192 TTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAG
296 TTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAG
2827257 AGTTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCA
361 AG-TGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGATACAAATCCATAAGCCA
* * * * *
2827322 TCACCGTTAAGTCGGTGCATTCATAAAAAAGAAACCATAGATTTCAGTGTACCCCATGTTAAAAT
425 TCATCGTTAAGTCGGTGCATCCATAAAAAAGTAACAATAGATTTCAGTGTACCCCATGTTAAAAC
* * *
2827387 AATAAAATAATTTTTTTAACCCGATCTGATCTGTAGTGTCACATTAGGGCTACCTGAGCGACTCA
490 AATAAAACAA-TTTTTTAACCCGATCTGATCTGGAGTGTCACATTAGGGCTACCAGAGCGACTCA
2827452 CCATAAAAATAGC-AGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATG
554 CCATAAAAATAGCGA-AAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATG
*
2827516 AGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAAACTCATATATAAAACAAA
618 AGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATATATAAAACAAA
2827581 ATACAATTACATGCCCCCTAATCACATGTACCATAATCTATAAGCAACGCCGGAAAAACTCCCTT
683 ATACAATTACATGCCCCCTAATCACATGTACCATAA-CTATAAGCAACGCCGGAAAAACTCCCTT
* *
2827646 ATTGATTTCGATAGCTACACTGGTATAATTCTTTTAACTTGCAATGGTGAGTAATGGAGTGAGCT
747 ATTGATTTCGATAGCTGCACTGGTATAATTCTTTTAACATGCAATGGTGAGTAATGGAGTGAGCT
* * *
2827711 TAGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAAGACATGCAGAT-AATT-AAAAGC
812 TCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATAGGACATACAGATAAATTGAAAA-C
* *
2827774 CATATAATTTTCCTTATTGAATCAGACATATACCAATTTTCAGAATAATCTAGG
876 CATATAATTTTCCTTATTGAATCAGACATATACCGATTTTCAGAATAATCTGGG
* * * *
2827828 GTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATATCAGTTCATAAGAAGTATTCATAGTA
1 GTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATAGTA
* * *
2827893 TCACGGTTTCATAAGGTCGAATAAGATGTCTAGTATGTTCCAATAGTACGATAAAATCATAATAG
66 TCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
* *
2827958 GTACACTAATCAAATGATAGTTCAGTAAATTTCAGAAATCATACTGTAGTGGAA-CTTTTTAAAC
131 GTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGT-GAAGCTTTTTAAAC
* *
2828022 TCGTATTTAAAACCATTGTATAAAGACCTATAGGAACATCTTAGGGCCTGGGAGCCTACGCAAGA
195 TCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATATT---G--T----G---A--C----
* **
2828087 AAGTTCGTAGCCGTCGGGCCTACCTAAGAACACATCTTAGGGCCACAGAAACTACCCGAGAATGA
242 -----C--A--CG--GGGCCTACCTAAGAACACATCTTAGGGCCATAGGGACTACCCGAGAATGA
*
2828152 TTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATAAG
296 TTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAG
*
2828217 AGTTGTACTTTACAAATCTGTATCTTCAAGATA
361 AG-TGTACTTTACAAATCTGTATCTCCAAGATA
2828250 ATAAAAAAGT
Statistics
Matches: 2090, Mismatches: 146, Indels: 150
0.88 0.06 0.06
Matches are distributed among these distances:
926 5 0.00
927 3 0.00
928 427 0.20
929 17 0.01
930 160 0.08
931 14 0.01
932 230 0.11
933 3 0.00
935 1 0.00
936 2 0.00
937 2 0.00
938 1 0.00
940 1 0.00
944 1 0.00
947 1 0.00
951 1 0.00
952 2 0.00
955 1 0.00
956 2 0.00
957 1 0.00
958 226 0.11
959 178 0.09
960 432 0.21
961 152 0.07
962 213 0.10
963 5 0.00
964 1 0.00
965 1 0.00
966 3 0.00
975 1 0.00
976 3 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (929 bp):
GTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATAGTA
TCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
GTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGAAGCTTTTTAAACT
CGTATTTAAAACCATCGTATAAAGACCTATAGGAACATATTGTGACCACGGGGCCTACCTAAGAA
CACATCTTAGGGCCATAGGGACTACCCGAGAATGATTTCAAGACCGCATAGCCTACCTAAGAGTC
ACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTGTACTTTACAAATCTGTATCTCCAAGA
TACAGTTTATACAGTGATACAAATCCATAAGCCATCATCGTTAAGTCGGTGCATCCATAAAAAAG
TAACAATAGATTTCAGTGTACCCCATGTTAAAACAATAAAACAATTTTTTAACCCGATCTGATCT
GGAGTGTCACATTAGGGCTACCAGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTC
TTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATA
AAACAGATTTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCA
TAACTATAAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTGCACTGGTATAATTCTTT
TAACATGCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGA
TACTATAGGACATACAGATAAATTGAAAACCATATAATTTTCCTTATTGAATCAGACATATACCG
ATTTTCAGAATAATCTGGG
Found at i:2829096 original size:907 final size:912
Alignment explanation
Indices: 2825472--2829160 Score: 4832
Period size: 960 Copynumber: 4.0 Consensus size: 912
2825462 GTAAACATAG
* * *
2825472 ATTTCAGTGTACCCCATGTTAAAACAATAAAACATTTTTTTTAACCCCGATCTGATCTAGAATGT
1 ATTTCAGTGTACCCCATGTTAAAACAATAAAACAATGTTTTCAA-CCCGATCTGATCTAGAATGT
* *
2825537 CACATTAGGTCTACCGGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAAC
65 CACATAAGGGCTACCGGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAAC
2825602 TTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGA
130 TTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGA
* *
2825667 TTTTCAGACTCATATATAAAACAAAATACAATTACATGTCCCCTAATCACATGTACCATACACTA
195 TTTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTA
*
2825732 TAAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACAT
260 TAAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACCT
2825797 GCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATA-ATGAACTACCAGGAGATACTA
325 GCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACA-GAACTACCAGGAGATACTA
* * * * *
2825861 TAGGACATGAATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGATATATACCGGTTTT
389 TAGGACATGCAGATAAATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGATTTT
* * *
2825926 CGGAATAATCTGGGGTTCTAATTGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAG
454 CAGAATAATCTAGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAG
* *
2825991 AAGCATTCATAGTATCACGGTTTCATAAGGTCGAATAGGATATTTAGTGTGTTCCAACAGTACGA
519 AAGCATTCATAGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGA
* *
2826056 TAAATTCATAATAGGAACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTG
584 TAAAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTG
*
2826121 AAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACA---TA-----T---
649 GAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGGCCTGGG
* * * * * **
2826175 ----T----TG--A---C----CACGGGGCCTACCTAAGGACATATCTTAGGGCCATAGGGCCTA
714 AGCCTACCAAGAAAGTTCGTGGCACGGGGCCTACCTAAGAACACATCTTAGGGCCACAAGAACTA
* * *
2826223 TCCGAGAATTATCTCATGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCC
779 CCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCC
* *
2826288 AGCTTGATCAGAGTGGTACTTTACAAATCTGTATCTCCAAAATACAATTTATACAGTGATACAAA
844 AGCTTGATCAGAGTTGTACTTTACAAATCTGTATCT------T-CAA--GATACAGT-AT----A
2826353 TCCATAAGCCATCATCGTTAAGCCGGTGCATCCAAAAAATAGTAAC
895 --C--AA---A--A--G-TAA-CC----CAT-------A-AG---C
* * * * * *
2826399 AATAGATTTTAGTGTACCACATGTTTAAACAATAAAACAAT-TTTTTAACCCGATCCGATCTGGA
1 -----ATTTCAGTGTACCCCATGTTAAAACAATAAAACAATGTTTTCAACCCGATCTGATCTAGA
* * * * *
2826463 GTGTCACATTAGGGCCACCAGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAATTTTTCTTA
61 ATGTCACATAAGGGCTACCGGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTA
* *
2826528 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCATTATTTTAAATAAAA
126 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
* * *
2826593 CAGACTTTCAGACTCGTATATAAAA-AAAATACAATTACATG-CCCCTAAGCACATGTACCATAC
191 CAGATTTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATAC
* ** * * * *
2826656 TATGCAAGCAACGCTGGAAAAACTCCCTTATTGATGTCGATAGCTGC-CTTGGTACAATTCTTTT
256 TCTATAAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGATGCAC-TGGTATAATTCTTTT
* *
2826720 AACCTGCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACTAGGTGAT
320 AACCTGCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGAT
* * *
2826785 GCTATAGGACATACAGATAAATTGAAAA-CGATATAATTTTCCTTATTGAATCAGACATATACCG
385 ACTATAGGACATGCAGATAAATT-AAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCG
* *
2826849 ATTTTCAGAATAATC-AGGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTT
449 ATTTTCAGAATAATCTA-GGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTT
* *
2826913 CATAAGAAGCATTCA-ATGTATCATGGCTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAAC
513 CATAAGAAGCATTCATA-GTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAAC
2826977 AGTACGATAAAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATAC
577 AGTACGATAAAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATAC
*
2827042 TGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATTGTATAAAGACCTATAGGAACATCTTAGG
642 TGTAGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGG
* * ** *
2827107 GACAGGGAGCCTACTCAAGAAAGTTTATGGCCATC-GAGCCTACCTAAGAACACATCTTAGGGCC
707 GCCTGGGAGCCTAC-CAAGAAAGTTCGTGG-CA-CGGGGCCTACCTAAGAACACATCTTAGGGCC
* * *
2827171 ACAGGGACTACCCGAGAATGATTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA
769 ACAAGAACTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA
*
2827236 AAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACA
834 AAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAATCTGTATCTTC-----A-AG---ATACA
2827301 GTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATTCATAAAAAAGAAACC
890 GT-AT----A--C--AA---A--A--G-TAA--C----C---CAT----AAG----C
* * * *
2827358 ATAGATTTCAGTGTACCCCATGTTAAAATAATAAAATAATTTTTTTAACCCGATCTGATCT-GTA
1 ----ATTTCAGTGTACCCCATGTTAAAACAATAAAACAATGTTTTCAACCCGATCTGATCTAG-A
* * *
2827422 GTGTCACATTAGGGCTACCTGAGCGACTCACCATAAAAATAGC-AGAAAATTTAAAACTTTTCTT
61 ATGTCACATAAGGGCTACCGGAGCGACTCACCATAAAAATAGCGA-AAAATTTAAAACTTTTCTT
2827486 AAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAA
125 AAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAA
*
2827551 ACAGATTTTCAAACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATA
190 ACAGATTTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATA
* * *
2827616 ATCTATAAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGCTACACTGGTATAATTCTTTT
255 CTCTATAAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTT
* *
2827681 AACTTGCAATGGTGAGTAATGGAGTGAGCTTAGGAAAGCTCTGTAATACAGAACTACCAGGAGAT
320 AACCTGCAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGAT
* *
2827746 ACTATAAGACATGCAGAT-AATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAA
385 ACTATAGGACATGCAGATAAATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGA
*
2827810 TTTTCAGAATAATCTAGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATATCAGTTCA
450 TTTTCAGAATAATCTAGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCA
* * * *
2827875 TAAGAAGTATTCATAGTATCACGGTTTCATAAGGTCGAATAAGATGTCTAGTATGTTCCAATAGT
515 TAAGAAGCATTCATAGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGT
* *
2827940 ACGATAAAATCATAATAGGTACACTAATCAAATGATAGTTCAGTAAATTTCAGAAATCATACTGT
580 ACGATAAAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGT
* *
2828005 AGTGGAACTTTTTAAACTCGTATTTAAAACCATTGTATAAAGACCTATAGGAACATCTTAGGGCC
645 AGTGGAGCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGGCC
*
2828070 TGGGAGCCTACGCAAGAAAGTTCGTAGC-CGTCGGGCCTACCTAAGAACACATCTTAGGGCCAC-
710 TGGGAGCCTAC-CAAGAAAGTTCGTGGCACG--GGGCCTACCTAAGAACACATCTTAGGGCCACA
*
2828133 AGAAACTACCCGAGAATGATTTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
772 AG-AACTACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA
*
2828198 AATTTTCCAGCTTGATAAGAGTTGTACTTTACAAATCTGTATCTTCAAGATA-A-TA-A-AAAAG
836 AATTTTCCAGCTTGATCAGAGTTGTACTTTACAAATCTGTATCTTCAAGATACAGTATACAAAAG
2828259 TAA-CCAT-AG-
901 TAACCCATAAGC
* * * *
2828268 ATTTCAGTGTACCCCATGTTAAAACAATAAAACAATGTTTTCAACACGATCTGACCTGGAGTGTC
1 ATTTCAGTGTACCCCATGTTAAAACAATAAAACAATGTTTTCAACCCGATCTGATCTAGAATGTC
2828333 ACATAAGGGCTACCGGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAACT
66 ACATAAGGGCTACCGGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAACT
* * *
2828398 TGTAAAATCATAAAATTATTTATGAGTACAAAATAAAAGTTATTAGTATTTGAAATAAAATAGAT
131 TGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGAT
*
2828463 TTTCAGACTCGTATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTAT
196 TTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTAT
** *
2828528 AAGCAAAACCGAAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACCTG
261 AAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACCTG
*
2828593 CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTTTA
326 CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATA
* * * *
2828658 GGATATGGAGATAAATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCA
391 GGACATGCAGATAAATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGATTTTCA
* *
2828723 GAATAATCTAGGGTTTTAATGGTAGTTCATCATGTAGGAGCTATAAAGATCTCAGTTCATAAGAA
456 GAATAATCTAGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
* * *
2828788 GCATTCATAGTATCACGGTTTCATAAGGTTGAATTGGATGTCTAGTGTGTTCCAACAGTATGATA
521 GCATTCATAGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATA
* *
2828853 AATTCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTATAGTGGA
586 AAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGA
* *
2828918 GCTTTTTAAACTCGTATTTAAAACCATCATATAAAGACCTATAGGAACAAT-TTAGGGCCTGAGA
651 GCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAAC-ATCTTAGGGCCTGGGA
2828982 GCCTACCCAAGAAAGTTCGTGGTCACGGGGCCTACCTAAGAACACATCTTAGGGCCACAAGAACT
715 GCCTA-CCAAGAAAGTTCGTGG-CACGGGGCCTACCTAAGAACACATCTTAGGGCCACAAGAACT
* *
2829047 CCCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAATATTTTC
778 ACCCGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTC
* * *
2829112 CAGCTTGATCAGAGATGTACTTTACAAATCTGTATCTCCAATATACAGT
843 CAGCTTGATCAGAGTTGTACTTTACAAATCTGTATCTTCAAGATACAGT
2829161 TTATACAGTG
Statistics
Matches: 2505, Mismatches: 178, Indels: 171
0.88 0.06 0.06
Matches are distributed among these distances:
906 373 0.15
907 446 0.18
908 7 0.00
909 3 0.00
915 2 0.00
920 3 0.00
923 1 0.00
927 2 0.00
928 422 0.17
929 20 0.01
930 163 0.07
931 10 0.00
932 32 0.01
933 1 0.00
935 1 0.00
938 2 0.00
943 2 0.00
948 2 0.00
949 1 0.00
950 2 0.00
951 4 0.00
954 2 0.00
955 1 0.00
956 1 0.00
957 2 0.00
958 206 0.08
959 180 0.07
960 455 0.18
961 153 0.06
962 5 0.00
963 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (912 bp):
ATTTCAGTGTACCCCATGTTAAAACAATAAAACAATGTTTTCAACCCGATCTGATCTAGAATGTC
ACATAAGGGCTACCGGAGCGACTCACCATAAAAATAGCGAAAAATTTAAAACTTTTCTTAAAACT
TGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGAT
TTTCAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATACTCTAT
AAGCAACGCCGGAAAAACTCCCTTATTGATTTCGATAGATGCACTGGTATAATTCTTTTAACCTG
CAATGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATACTATA
GGACATGCAGATAAATTAAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCGATTTTCA
GAATAATCTAGGGTTCTAATGGTAGTTCATCATGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
GCATTCATAGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATA
AAATCATAATAGGTACACTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGA
GCTTTTTAAACTCGTATTTAAAACCATCGTATAAAGACCTATAGGAACATCTTAGGGCCTGGGAG
CCTACCAAGAAAGTTCGTGGCACGGGGCCTACCTAAGAACACATCTTAGGGCCACAAGAACTACC
CGAGAATGATCTCAAGACCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAG
CTTGATCAGAGTTGTACTTTACAAATCTGTATCTTCAAGATACAGTATACAAAAGTAACCCATAA
GC
Found at i:2831537 original size:961 final size:960
Alignment explanation
Indices: 2829574--2835480 Score: 9577
Period size: 961 Copynumber: 6.2 Consensus size: 960
2829564 GGGCAACAGG
* *
2829574 GCTATACTTTAGAAATCTATATCTCCAAGATACAGTTTATACAGTAATACAAATCAATAATCCAT
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
* *
2829639 CACTGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTTAGTGTACCACATGTTAAAACA
66 CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
*
2829704 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCATATTAGGGCCACCGGAGTGACCCACC
131 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCACC
* * *
2829769 GTAAAAATAACAAAAAATTTAAAATTTTTCTTAAAACTTGTAATCTTATAAAATTATTTATAAGT
196 GTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAGT
* *
2829834 ACAAAATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATAGATAAAACAAAATG
261 ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
* * *
2829899 CAATTACTTGCCCTCTAATCACATGTACCATACTCTGCAAGCAATGCAGGAAAAACTCCCTTATT
326 CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
*
2829964 GATGTTAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
391 GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
2830029 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
456 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
* *
2830094 TAATTTTCCTTATTAAATTAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTC
521 TAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
*
2830159 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCATGGTTTCATAAG
586 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
*
2830224 GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAA
651 GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAAA
2830289 CATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCAT
716 CATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCAT
*
2830354 CATATAAAGACCTAAGGGAACATCTTATGGCCTGAGAGCCTACCCAAGTAAGTTCTGGGCCACGG
781 CATATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTAAGTTCTGGGCCACGG
2830419 GGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTACCCCGAGAATGTTCTCAGGGCCGCAGA
846 GGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTA-CCCGAGAATGTTCTCAGGGCCGCAGA
2830484 GCCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
910 GCCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
*
2830535 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATTCAAATCCATAATCCAT
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
*
2830600 CACCGTTAAGTCGGCGCATCTATAAAGCAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
66 CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
*
2830665 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCATATTAGGGCCACCGGAGTGACCCACC
131 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCACC
* * *
2830730 GTAAAAATAACAAAAAATTTAAAATTTTTCTTAAAACTTGTAATCTTATAAAATTATTTATAAGT
196 GTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAGT
2830795 ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
261 ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
2830860 CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
326 CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
2830925 GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
391 GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
*
2830990 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATATGACATGCAGATAAATTGAAAGCCATA
456 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
* *
2831055 TAATTTTCCTTATTAAATTAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTC
521 TAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
2831120 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
586 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
*
2831185 GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAA
651 GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAAA
2831250 CATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCAT
716 CATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCAT
*
2831315 CATATAAAGACCTAAGGGAACATCTTATGGCCTGAGAGCCTACCCAAGTAAGTTCTGGGCCACGG
781 CATATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTAAGTTCTGGGCCACGG
2831380 GGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTACCCGAGAATGTTCTCAGGGCCGCAGAG
846 GGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTACCCGAGAATGTTCTCAGGGCCGCAGAG
2831445 CCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
911 CCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
*
2831495 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTTATACAGTAATTCAAATCCATAATCCA
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAG-TTTATACAGTAATACAAATCCATAATCCA
*
2831560 TCACCGTTAAGTCGGCGCATCTATAAAGCAGTAACCATAGATTTCAGTGTACCACATGTTAAAAC
65 TCACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAAC
* * *
2831625 AATAAAATAATTTTTTAAGCCGATTGGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCAC
130 AATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCAC
* * *
2831690 CGTAAAAATAACAGAAAATTTGAAACATATCTTAAAACTTGTAATCTCATAAAATTATTTATAAG
195 CGTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAG
* *
2831755 TTCAAAATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATAGATAAAACAAAAT
260 TACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAAT
*
2831820 ACAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATTCCGGAAAAACTCCCTTAT
325 ACAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTAT
2831885 TGATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTC
390 TGATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTC
*
2831950 GGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATATGACATGCAGATAAATTGAAAGCCAT
455 GGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCAT
*
2832015 ATAATTTTCCTTATTAAATTAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGT
520 ATAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGT
*
2832080 TCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCATGGTTTCATAA
585 TCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAA
*
2832145 GGTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAA
650 GGTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAA
2832210 ACATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCA
715 ACATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCA
*
2832275 TCATATAAAGACCTAAGGGAACATCTTATGGCCTGAGAGCCTACCCAAGTAAGTTCTGGGGCCAC
780 TCATATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTAAGTTCT-GGGCCAC
2832340 GGGG----CCTAAGAA-ACATCTTAGGGCGACAGGGCCTACCCGAGAATGTTCTCAGGGCCGCAG
844 GGGGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTACCCGAGAATGTTCTCAGGGCCGCAG
2832400 AGCCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
909 AGCCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
*
2832452 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATTCAAATCCATAATCCAT
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
*
2832517 CACCGTTAAGTCGGCGCATCTATAAAGCAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
66 CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
*
2832582 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCATATTAGGGCCACCGGAGTGACCCACC
131 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCACC
2832647 GTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAGT
196 GTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAGT
2832712 ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
261 ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
2832777 CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
326 CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
* *
2832842 GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGATTAATAGAGTGAGCTTCA
391 GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
* *
2832907 GAAAGCTATGTAATATAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
456 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
*
2832972 TAATTTTCCTTATTGAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
521 TAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
2833037 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
586 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
2833102 GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAAA
651 GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAAA
* *
2833167 GATGGTTCAATAAATCTCAA-AAATCATACTGTAGATGAGCTTTTTATACTCGTATTTAACACCA
716 CATGGTTCAATAAATCT-AAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCA
* * * * *
2833231 TCATATAAAGACCCAAGGAAACATCTTAGGGCCTAAGAGCCTACCCAAG-ATTGTTCTGGGCCGC
780 TCATATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTA-AGTTCTGGGCCAC
* * * * * *
2833295 GGAGCCTACCTAATAACATATCTTAGGGCCACAGGGCCTACCCGTGAATGTTCTCAAGGCCGCAG
844 GGGGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTACCCGAGAATGTTCTCAGGGCCGCAG
* * * *
2833360 AACCTACCTAAGAGTCACATTAGGTCCATATAACTTTTCTAGCATGATCAGA
909 AGCCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
* * * *
2833412 GCTATACTTTACAAATATGTATCTCGAAGATACAGTTTATACAGTGATACAAATCCATAATCCAT
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
* *
2833477 CACCGTTAAGTCGGCACATCCATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
66 CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
* * *
2833542 ATAAAACAATTTTTTTAACCCGA-TCTGATCTTGAGTGTCACATTAGGGCCACTGGAGTGACCCA
131 ATAAAACAA-TTTTTTAACCCGATTC-GATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCA
* * *
2833606 CTGTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAT
194 CCGTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAA
* * *
2833671 GCACAAAATAAAAGTTATCAGTATTTGAAATAAAACA-ATTTTTAAGACACATAGATAAAACAAA
259 GTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGA-TTTTCAGACTCATAGATAAAACAAA
*
2833735 ATACAATTA-AGTGCCCTCTAATCACATGTACCATACTCTACAAGCAACGCCGGAAAAACTCCCT
323 ATACAATTACA-TGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCT
* * * *
2833799 TATTGATGTCGATAGTTGCACTGGTACT-ATTCTTTTAACCTGTAATTGTGAGTAATATAGTGAG
387 TATTGATGTCAATAGTTGCACTGGTA-TAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAG
2833863 CTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAG
451 CTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAG
* *
2833928 CCATATAATTTTCCTTATTGAATCAGACATATACCAGTTTTCAGAATAATATGGGGTTCCAATGG
516 CCATATAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGG
*
2833993 TAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTC
581 TAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTC
* *
2834058 ATAAGGTCGAATAGGATGTCTAGTGTATTCCAATAGTACGATAAAATCATAATAGGTACACTAAT
646 ATAAGGTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAAT
* * * * * * *
2834123 -AAAATGATTGTTCAATAAATCTCAGAAATAATACTATAG-TGGAGCTTTTTAAACTCATATTTA
711 CAAAA-CATGGTTCAATAAATCTAAGAAATCATACTGTAGAT-GAGCTTTTTACACTCGTATTTA
* * * * * *
2834186 AAACCAACGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGTCTACCCAAGAAAGTTCGGG
774 ACACCATCATATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTAAGTTCTGG
* * * *
2834251 GCCACAGGGCCTACCTAAGAACATATCTTAGTGCCG-CAGGGCCTACCCGAGAATGATCTCAGGG
839 GCCACGGGGCCTACCTAAGAACACATCTTAG-GGCGACAGGGCCTACCCGAGAATGTTCTCAGGG
* *
2834315 CCGCATAGCCTACCTAAGAGTCACATTAGGTCCATCA-AAAATTTCCAGCTTGATCAGA
903 CCGCAGAGCCTACCTAAGAGTCACATTAGGTCCAT-ATAAATTTTCCAGCTTGATCAGA
* * * * *
2834373 GCTGTACTTTATAAATCTGTATCTCCAAGATACAGTTTATACAGTGATACAAATCTATAAGCCAT
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
* * * * * *
2834438 CACCGTTAAGCCGGTGTATCCATAAAACAATAACCATAGATTTTAGTGTACCACATGTTAAAACA
66 CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
**** * * * * ** * * *
2834503 ATAAAA-AAAAAATTAACTCGATCCGATCTGTAGTGTCACATTAGGGCCAGTGAAGCGTCCCACC
131 ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCACC
* * ** *
2834567 ATAAAAATAATAGAAAATTTAAAACTTTTCTTAAAACTTGTAAAATCATAAAATTATTTATGAG-
196 GTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAGT
* * *
2834631 ACAAAATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCAGACTCATATATATAACAAAATA
261 ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
* * * * * * *** *
2834696 CAATTTCATGCCCCCTAATCACTTGTACCGTACTCTATAAGAAACATCGGAAAAACTTCCTTATT
326 CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
* * * ** * *
2834761 GATTTCGATAGCTATACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATAGAGTGAGCTTCG
391 GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
* * * *
2834826 GAAAGCTCTGTAATATAGAACAACTAGGTGATTCTATAGGACATGCAGATAAATTGAAAGCCATA
456 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
* *
2834891 TAATTTTCCTTATTGAATCAGTCATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
521 TAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
* ** * *
2834956 CATCAAGTAGAAGCTATAAATATCTCAGTTCATAAGAAACATTCATGGTATCACAGTTTCAGAAG
586 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
* *
2835021 GTCGAATAGGATGTCTAGTGTG-TTCCAAGAGTGCGATAAAATCATAATAGGTACACTAATCAAA
651 GTCGAATAGGATGTCTAGTG-GATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAA
** * * * * * *
2835085 TGATAGTTAAATAAATCTCAGAAATCATACTGTAG-TGGAGCTTTTTAAACTCGTATATAAAACC
715 ACATGGTTCAATAAATCTAAGAAATCATACTGTAGAT-GAGCTTTTTACACTCGTATTTAACACC
* * * *
2835149 ATCGTATAAAGAGTTAACCTAAGGGAACATCTTAGGGACTGAGAGCCTACCCAAGAAAGTTCGGG
779 ATCATAT-AA-AG---ACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTAAGTTCTGG
* * * * ** *
2835214 GCCATGGGACCTACCTAAGAACACATCTTAGGGTCG-TAGGGACTACCCGAGAATGAGCTGAGGG
839 GCCACGGGGCCTACCTAAGAACACATCTTAGGG-CGACAGGGCCTACCCGAGAATGTTCTCAGGG
* * * *
2835278 TCGTAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTGCCAGCTTGATCAGA
903 CCGCAGAGCCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
* * * * * *
2835336 GCTGTACTTTACAAATTTGTATCTCCAAGATATAGTTTATACAGTGATACAAATCCATAAGCCAT
1 GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
* * * * *
2835401 TACCGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGTGTACAACATGTTAAAACG
66 CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
2835466 ATAAAACAATTTTTT
131 ATAAAACAATTTTTT
2835481 TTAATATATA
Statistics
Matches: 4679, Mismatches: 233, Indels: 65
0.94 0.05 0.01
Matches are distributed among these distances:
955 10 0.00
956 770 0.16
957 137 0.03
958 478 0.10
959 114 0.02
960 350 0.07
961 2522 0.54
962 18 0.00
963 276 0.06
964 4 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (960 bp):
GCTATACTTTAGAAATCTGTATCTCCAAGATACAGTTTATACAGTAATACAAATCCATAATCCAT
CACCGTTAAGTCGGCGCATCTATAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACA
ATAAAACAATTTTTTAACCCGATTCGATATGGAGTGTCACATTAGGGCCACCGGAGTGACCCACC
GTAAAAATAACAGAAAATTTAAAACTTTTCTTAAAACTTGTAATCTCATAAAATTATTTATAAGT
ACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACTCATAGATAAAACAAAATA
CAATTACATGCCCTCTAATCACATGTACCATACTCTACAAGCAATGCCGGAAAAACTCCCTTATT
GATGTCAATAGTTGCACTGGTATAATTCTTTTAACCTGCAATAGTGAGTAATAGAGTGAGCTTCG
GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
TAATTTTCCTTATTAAATCAGACATATACCAGTTTTCAGAATAATCTGGGGTTCCAATGGTAGTT
CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGTATTCATGGTATCACGGTTTCATAAG
GTCGAATAGGATGTCTAGTGGATTCCAACAGTACGATAAAATCATAATAGGTACACTAATCAAAA
CATGGTTCAATAAATCTAAGAAATCATACTGTAGATGAGCTTTTTACACTCGTATTTAACACCAT
CATATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGTAAGTTCTGGGCCACGG
GGCCTACCTAAGAACACATCTTAGGGCGACAGGGCCTACCCGAGAATGTTCTCAGGGCCGCAGAG
CCTACCTAAGAGTCACATTAGGTCCATATAAATTTTCCAGCTTGATCAGA
Found at i:2837304 original size:32 final size:32
Alignment explanation
Indices: 2837264--2837329 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
2837254 ACAGAACTTG
2837264 TAATTTAATTCTAACAATCCTTCAACTTCTTA
1 TAATTTAATTCTAACAATCCTTCAACTTCTTA
*
2837296 TAATTTAATTCTAACAATCCTTCAATTTCTTA
1 TAATTTAATTCTAACAATCCTTCAACTTCTTA
2837328 TA
1 TA
2837330 TAAATATAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (32 bp):
TAATTTAATTCTAACAATCCTTCAACTTCTTA
Found at i:2839201 original size:30 final size:30
Alignment explanation
Indices: 2839146--2839202 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
2839136 AAGATTTTGG
*
2839146 GACCATTTTGTAATTTTTCAAAAGTTAGGT
1 GACCATTTGGTAATTTTTCAAAAGTTAGGT
2839176 GACCTATTTGGTAATTTTT-AAAAGTTA
1 GACC-ATTTGGTAATTTTTCAAAAGTTA
2839203 TGGGGTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.44
Consensus pattern (30 bp):
GACCATTTGGTAATTTTTCAAAAGTTAGGT
Found at i:2842648 original size:2 final size:2
Alignment explanation
Indices: 2842641--2842685 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
2842631 TCTCCAACAA
2842641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2842683 AT A
1 AT A
2842686 AGAAGATGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.