Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001712.1 Hibiscus syriacus cultivar Beakdansim tig00003459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77821

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6288--6336
20
2.6
19
78
9
55
10
6
6
77
1.11
9393--9688
105
2.8
104
85
4
418
19
28
16
35
1.94
14923--14961
20
1.9
21
89
5
62
33
0
0
66
0.92
14928--14981
21
2.6
21
82
8
58
35
3
1
59
1.26
16182--16253
3
24.0
3
100
0
144
33
0
0
66
0.92
17214--17254
18
2.3
17
84
12
55
24
19
17
39
1.92
17103--17463
193
1.9
193
86
3
521
23
23
16
36
1.94
16937--19710
489
5.7
489
95
0
4918
21
24
18
35
1.95
20295--20363
30
2.3
30
97
0
129
23
31
15
28
1.95
20583--20651
30
2.3
30
97
0
129
23
31
15
28
1.95
20876--20941
30
2.2
30
86
0
87
22
28
16
31
1.96
21156--21224
30
2.3
30
97
0
129
23
31
15
28
1.95
20923--22673
291
5.9
293
94
4
3084
18
25
19
36
1.95
21447--21515
30
2.3
30
97
0
129
23
31
15
28
1.95
20923--22673
594
3.0
594
98
0
3398
18
25
19
36
1.95
21750--21818
30
2.3
30
94
0
120
21
31
15
30
1.95
22041--22109
30
2.3
30
97
0
129
23
31
15
28
1.95
22344--22412
30
2.3
30
89
0
111
20
31
17
30
1.95
23192--23262
33
2.2
33
92
0
115
19
29
19
30
1.97
23425--23626
39
5.2
39
79
5
185
20
28
20
31
1.97
37918--37943
2
13.0
2
100
0
52
50
0
0
50
1.00
41447--41503
17
3.4
17
100
0
114
33
17
0
49
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46657--46907
123
2.0
123
86
3
353
15
22
23
38
1.92
47262--47315
23
2.3
24
81
6
58
25
3
20
50
1.65
48472--48498
10
2.7
10
100
0
54
55
0
0
44
0.99
48763--48795
17
2.1
16
88
11
50
51
3
12
33
1.54
54882--54976
41
2.3
42
83
1
120
27
15
22
34
1.94
62004--62387
184
2.1
183
92
3
634
42
3
9
45
1.51
66862--66900
18
2.2
18
100
0
78
30
30
17
20
1.96
70822--70994
90
1.9
89
91
1
283
36
10
7
45
1.67
75352--75387
7
5.1
7
89
0
54
55
0
0
44
0.99

Tables:   1

The End!