Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001714.1 Hibiscus syriacus cultivar Beakdansim tig00003470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69236

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
131--171
20
2.0
20
95
0
73
21
7
31
39
1.81
1498--1577
40
2.0
40
82
2
99
33
20
5
41
1.74
2651--2690
21
1.9
21
89
0
62
40
7
0
52
1.30
5982--6036
18
3.1
18
82
10
60
29
3
3
63
1.28
6984--7064
17
4.7
18
75
13
71
48
11
7
33
1.67
6993--7063
17
4.2
17
78
5
72
47
12
7
32
1.68
6992--7082
35
2.6
35
84
1
103
49
10
7
31
1.66
7004--7087
35
2.4
35
85
0
105
47
9
8
34
1.66
16023--16048
2
13.0
2
100
0
52
50
0
0
50
1.00
16331--16359
14
2.1
14
100
0
58
31
27
6
34
1.83
17161--17271
39
2.8
39
74
8
118
43
2
18
35
1.65
22804--22850
22
2.1
24
84
11
64
40
0
4
55
1.19
24058--24133
35
2.2
35
90
4
118
40
23
0
35
1.55
24531--24778
130
1.9
130
91
0
406
37
14
12
35
1.84
25249--25282
16
2.0
18
88
11
54
64
5
2
26
1.30
29018--29181
81
2.0
82
95
3
296
39
22
22
15
1.92
32448--32472
2
12.5
2
100
0
50
52
48
0
0
1.00
40207--40265
27
2.1
28
90
3
93
42
30
8
18
1.80
42345--42744
200
2.0
200
88
0
593
28
16
28
27
1.97
44206--44250
18
2.5
18
100
0
90
13
11
42
33
1.79
44336--44498
21
7.9
21
66
19
101
39
24
19
16
1.92
44367--44477
20
5.4
20
66
19
68
42
24
19
13
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44346--44501
41
3.8
41
95
0
276
39
25
19
15
1.91
52001--52042
20
2.0
20
86
4
57
21
11
14
52
1.73
59856--59893
4
9.5
4
94
0
67
28
44
0
26
1.54
62052--62079
9
3.1
9
100
0
56
21
35
21
21
1.96
62549--62576
2
14.0
2
100
0
56
50
0
0
50
1.00
62610--62649
22
2.0
20
85
14
55
60
0
17
22
1.37
63240--63273
16
2.1
17
88
5
52
35
0
0
64
0.94
66467--66616
60
2.5
59
80
8
144
30
16
6
46
1.71

Tables:   1

The End!