genome.fa.s1716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001716.1 Hibiscus syriacus cultivar Beakdansim tig00003476_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117158

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3845--4018	60	2.9	61	72	19	159	31	21	4	43	1.71
4193--4329	60	2.3	59	80	12	154	36	5	22	35	1.79
4586--4635	23	2.1	25	85	7	68	60	6	2	32	1.32
4816--4859	21	2.1	21	83	8	54	38	6	0	54	1.27
14423--14456	2	17.0	2	100	0	68	0	50	0	50	1.00
17492--17516	13	1.9	13	100	0	50	24	24	12	40	1.88
22038--22078	2	20.5	2	100	0	82	51	0	0	48	1.00
29452--29765	163	1.9	164	84	4	420	33	13	16	36	1.87
31886--31932	23	2.0	24	83	4	60	31	0	10	57	1.33
32446--32494	25	2.0	25	100	0	98	24	22	20	32	1.98
41699--41735	16	2.3	16	95	0	65	32	13	5	48	1.65
41714--41767	26	2.1	26	86	6	74	37	16	5	40	1.72
47439--47481	21	2.0	21	81	0	50	27	30	25	16	1.97
48478--48610	30	4.4	30	100	0	266	23	20	24	32	1.98
54871--54938	29	2.3	30	84	2	84	30	7	23	38	1.82
55270--55301	9	3.6	9	95	0	55	37	3	0	59	1.13
57420--57494	33	2.3	33	100	0	150	29	5	17	48	1.69
57769--57822	21	2.5	22	78	6	65	68	3	3	24	1.22
60662--60711	24	2.2	22	82	7	55	30	6	2	62	1.31
72040--72070	16	2.0	15	93	6	53	70	0	3	25	1.02
72510--72576	33	2.0	33	97	0	125	32	8	17	40	1.81
72636--72697	3	21.3	3	87	12	94	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73775--74032	128	2.0	126	92	1	426	36	13	12	37	1.83
74358--74420	28	2.3	27	78	8	63	46	1	3	49	1.27
74500--74533	16	2.0	18	88	11	54	64	5	2	26	1.30
74563--74598	16	2.2	16	90	0	54	52	8	0	38	1.32
74653--74695	21	2.0	21	100	0	86	39	0	13	46	1.44
74664--74749	35	2.5	35	84	0	100	37	1	20	40	1.61
77709--77810	34	2.9	36	88	5	154	43	13	14	28	1.84
77709--77844	37	3.8	35	84	5	157	41	13	13	30	1.84
78256--78308	2	26.5	2	96	0	97	47	0	0	52	1.00
78417--78451	16	2.1	18	89	10	56	25	8	0	65	1.21
81621--81717	16	6.4	14	72	20	63	77	8	13	1	1.04
81627--81700	16	4.5	15	77	17	69	79	6	13	0	0.91
81648--81672	10	2.5	10	100	0	50	84	8	8	0	0.79
81621--81707	34	2.5	33	80	14	88	78	8	13	0	0.96
81627--81700	8	9.0	8	74	14	62	79	6	13	0	0.91
82358--82406	22	2.2	22	92	0	80	32	24	14	28	1.94
83337--83480	36	4.0	36	92	0	252	25	20	13	39	1.90
83295--83480	72	2.6	73	87	4	229	26	20	15	37	1.93
83338--83618	72	4.0	71	74	10	290	26	19	14	39	1.90
83520--83617	36	2.7	36	88	4	135	24	19	16	39	1.91
83377--83681	138	2.2	137	83	2	396	27	20	13	39	1.90
83576--83750	67	2.6	65	84	6	217	32	21	9	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83567--83749	68	2.7	67	84	4	219	30	21	9	38	1.85
84323--84518	100	2.0	100	86	5	279	34	26	18	20	1.96
84459--84681	64	3.5	64	88	6	301	34	26	18	19	1.95
84456--84638	64	2.8	65	92	3	307	35	26	19	19	1.95
84359--84809	235	1.9	230	91	3	735	35	26	18	19	1.95
84524--84859	171	2.0	171	96	0	620	34	26	19	20	1.96
84693--84852	65	2.5	66	87	6	222	34	26	19	19	1.96
84588--84789	106	1.9	104	87	6	264	35	26	18	18	1.95
85371--85477	34	3.1	34	85	7	160	41	12	15	30	1.84
85370--85505	37	3.8	36	86	3	177	40	13	14	31	1.85
86044--86078	16	2.1	18	89	10	56	25	8	0	65	1.21
86828--86874	23	2.0	23	83	0	58	44	6	10	38	1.65
100396--100433	16	2.2	18	86	13	53	50	7	2	39	1.46
108500--108541	2	22.0	2	90	9	70	50	0	0	50	1.00
109367--109410	13	3.4	13	78	9	54	31	0	0	68	0.90
110701--110735	2	18.0	2	94	5	63	48	0	0	51	1.00
114594--114636	22	2.0	22	100	0	86	32	30	13	23	1.93
116547--116578	4	8.0	4	92	0	55	25	3	25	46	1.67

Tables:   1

The End!