genome.fa.s1717.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001717.1 Hibiscus syriacus cultivar Beakdansim tig00003477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119204

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1773--1817	17	2.6	18	89	3	65	40	6	22	31	1.80
3343--3384	17	2.4	18	84	8	59	30	2	2	64	1.19
3390--3442	27	2.0	27	89	10	83	37	7	0	54	1.29
10908--10933	3	8.7	3	100	0	52	30	0	0	69	0.89
19218--19355	60	2.3	60	86	2	179	34	11	13	39	1.81
22664--22711	22	2.2	22	85	7	62	41	0	10	47	1.37
24641--24700	27	2.2	28	82	8	70	40	0	18	41	1.50
36835--36992	21	7.8	20	70	7	77	37	25	17	18	1.93
36960--37152	20	9.6	20	83	5	237	34	26	19	19	1.95
37532--37602	33	2.2	33	94	0	124	11	23	16	47	1.79
37682--37757	21	3.7	21	79	8	93	47	17	22	13	1.81
37777--37904	19	7.1	19	71	19	78	11	25	17	45	1.82
37799--37855	14	3.7	14	75	20	60	10	24	21	43	1.83
37782--37905	33	3.5	33	86	10	158	12	24	17	45	1.82
37840--37904	21	3.1	21	82	4	96	10	26	15	47	1.78
39832--39888	14	3.7	14	72	20	51	43	22	22	10	1.84
39814--39937	33	3.7	33	89	1	176	45	26	17	9	1.79
39879--39937	19	3.4	19	77	22	83	47	30	15	6	1.71
39863--39921	14	3.9	14	76	20	64	47	28	16	6	1.72
39933--40105	19	9.6	19	75	12	150	10	20	23	46	1.81
39955--40011	14	3.7	14	75	20	51	10	22	22	43	1.84
39938--40030	33	2.8	33	95	0	168	10	21	21	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39933--40105	33	4.8	38	79	8	159	10	20	23	46	1.81
42027--42062	14	2.6	14	95	0	63	33	0	22	44	1.53
42169--42267	19	5.4	19	76	14	100	48	16	21	14	1.80
42169--42286	53	2.2	53	87	3	175	46	16	22	14	1.83
42277--42571	72	4.2	70	76	15	268	14	22	17	44	1.85
42282--42552	53	5.1	53	90	7	412	14	22	17	45	1.84
44833--44857	12	2.1	12	100	0	50	0	28	0	72	0.86
45031--45077	24	2.0	24	87	8	69	38	21	14	25	1.92
45744--45972	20	11.4	20	84	1	226	19	17	26	37	1.93
51028--51151	64	1.9	64	91	0	203	16	17	19	45	1.85
53647--53790	59	2.5	57	77	13	159	42	12	8	36	1.73
53929--53982	28	1.9	28	88	0	81	24	18	25	31	1.97
62063--62109	13	3.4	14	82	11	53	38	6	27	27	1.81
62191--62250	21	3.0	21	83	9	81	15	26	30	28	1.96
62218--62266	21	2.2	21	82	10	53	16	32	22	28	1.95
62508--62547	2	20.0	2	100	0	80	50	0	0	50	1.00
64912--64963	2	26.0	2	100	0	104	50	0	0	50	1.00
67682--67727	20	2.3	20	100	0	92	28	50	4	17	1.65
69847--69903	30	2.0	28	86	6	78	36	1	10	50	1.47
70623--70659	2	18.5	2	100	0	74	51	0	0	48	1.00
82421--82576	50	3.1	49	72	14	124	16	32	27	23	1.96
82668--82698	10	3.1	10	95	0	53	35	32	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83519--83550	14	2.3	14	100	0	64	12	21	31	34	1.91
89760--89822	21	2.9	21	83	4	63	25	33	25	15	1.95
89804--89841	20	1.9	20	88	0	58	26	36	26	10	1.89
96334--96402	23	3.0	23	82	0	93	30	24	26	18	1.98
99570--99602	15	2.2	15	94	0	57	30	24	15	30	1.95
100834--100872	14	2.6	15	88	8	53	69	0	2	28	1.02
110929--111170	108	2.2	110	85	2	326	23	18	20	37	1.94
113313--113362	16	3.4	16	73	21	63	56	6	0	38	1.24
113313--113375	28	2.2	28	88	5	90	60	6	0	33	1.22

Tables:   1

The End!