Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001718.1 Hibiscus syriacus cultivar Beakdansim tig00003478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116267

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4543--4576
15
2.3
15
89
0
50
44
2
5
47
1.42
5006--5138
59
2.2
59
82
5
160
42
4
20
32
1.72
5759--5820
30
2.1
30
84
0
79
33
19
30
16
1.94
6042--6092
24
2.1
24
100
0
102
37
15
15
31
1.89
13768--13817
22
2.3
22
89
0
73
12
12
40
36
1.79
13776--13819
22
2.0
22
95
0
79
13
11
36
38
1.81
17120--17152
9
3.8
9
84
8
50
54
0
0
45
0.99
17685--17738
27
2.1
25
78
18
58
70
0
1
27
0.98
17677--17740
19
3.5
19
68
21
55
67
0
1
31
1.00
17699--17768
29
2.7
24
80
12
68
65
2
0
31
1.07
18159--18191
9
3.8
9
84
8
50
45
0
0
54
0.99
18864--19231
62
5.9
61
88
3
459
38
15
19
26
1.92
23618--23678
24
2.5
25
79
10
63
36
4
6
52
1.49
26965--27066
48
2.1
47
96
1
186
40
17
15
26
1.90
28041--28111
32
2.2
32
84
0
97
35
21
12
30
1.91
36264--36305
21
2.0
21
95
0
75
26
19
35
19
1.95
37530--37841
155
2.0
157
96
1
583
29
16
13
40
1.87
45580--45731
3
50.7
3
87
0
223
32
1
0
65
1.04
46201--46230
12
2.5
12
100
0
60
56
10
33
0
1.32
46242--46271
15
1.9
16
93
6
53
80
3
16
0
0.85
59686--59878
52
3.7
52
97
0
368
22
14
24
37
1.92
60520--61063
113
4.8
113
91
2
824
37
13
20
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61312--61447
3
45.7
3
86
1
193
32
2
0
65
1.05
61919--61948
12
2.5
12
100
0
60
56
10
33
0
1.32
61960--61989
15
1.9
16
93
6
53
80
3
16
0
0.85
62870--62918
24
2.1
22
81
7
53
38
2
2
57
1.22
66547--66614
35
1.9
35
82
8
84
45
2
7
44
1.46
68296--68344
24
2.0
24
84
7
64
57
12
2
28
1.46
73344--73521
64
2.8
64
82
3
214
25
17
26
30
1.97
73359--73521
65
2.5
65
85
3
222
26
15
26
31
1.96
73730--73769
20
2.0
21
85
14
57
45
7
5
42
1.54
74996--75113
44
2.7
42
79
8
128
26
18
26
28
1.98
80889--81066
64
2.8
64
81
3
205
25
16
26
30
1.97
80904--81066
65
2.5
65
84
3
213
26
15
26
31
1.96
81283--81322
20
2.0
21
85
14
57
45
7
5
42
1.54
82582--82631
24
2.1
24
85
7
66
58
12
2
28
1.45
87761--87793
2
16.5
2
100
0
66
48
0
0
51
1.00
93973--94400
237
1.8
237
91
3
718
27
14
17
41
1.88
106733--106771
20
2.0
20
89
0
60
33
30
17
17
1.94
109630--109695
32
2.1
32
91
0
105
31
12
16
39
1.85
111835--111896
27
2.3
27
97
0
115
29
9
16
45
1.79

Tables:   1

The End!