Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001719.1 Hibiscus syriacus cultivar Beakdansim tig00003479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54502

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156--206
20
2.5
20
90
6
77
23
13
33
29
1.93
8157--8221
20
3.3
20
74
8
71
27
29
18
24
1.98
8785--8834
18
2.7
18
87
6
64
22
26
22
30
1.99
12639--12750
29
4.0
28
74
15
106
40
4
9
45
1.57
12642--12748
54
1.9
58
83
11
143
40
4
9
45
1.57
12981--13022
21
2.0
21
90
0
66
23
19
28
28
1.98
13051--13090
20
1.9
21
85
10
55
37
37
10
15
1.80
14802--14966
60
2.8
60
80
0
195
38
4
24
32
1.77
19074--19131
29
2.0
29
93
0
98
13
37
25
22
1.91
19174--19215
14
3.0
14
96
0
75
21
40
28
9
1.84
19202--19256
20
2.8
20
77
0
65
29
29
25
16
1.97
24665--24704
18
2.2
18
86
8
55
67
0
0
32
0.91
24676--24715
18
2.2
18
83
12
55
62
0
0
37
0.95
24673--24715
19
2.2
20
80
12
54
62
0
0
37
0.95
29044--29216
90
1.9
90
97
0
328
22
12
21
42
1.87
29060--29244
90
2.1
89
83
6
230
26
13
20
39
1.90
34001--34139
73
1.9
67
85
11
154
41
4
7
47
1.51
34001--34153
72
2.1
72
86
10
211
41
4
7
47
1.52
44808--45105
105
2.8
105
86
3
438
19
28
16
35
1.94
50366--50404
20
1.9
21
89
5
62
33
0
0
66
0.92
50371--50424
21
2.6
21
82
8
58
35
3
1
59
1.26
51629--51687
3
19.0
3
93
6
100
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52649--52689
18
2.3
17
84
12
55
24
19
17
39
1.92
52538--52901
195
1.9
195
87
2
543
23
23
16
36
1.94
52372--54502
489
4.4
489
96
0
3821
21
24
18
35
1.96
53027--53390
195
1.9
195
83
2
480
23
23
17
35
1.95

Tables:   1

The End!