genome.fa.s172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000172.1 Hibiscus syriacus cultivar Beakdansim tig00000303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137261

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2644--2770	20	6.3	20	91	0	155	25	21	23	29	1.99
2697--2829	20	6.7	20	93	0	167	26	21	18	34	1.96
2657--2829	40	4.3	39	86	4	177	26	20	19	32	1.97
2826--2871	21	2.2	21	88	0	65	36	17	26	19	1.94
3033--3067	14	2.6	13	86	8	52	77	5	0	17	0.96
3543--3620	26	3.0	24	77	19	61	73	1	2	23	1.03
3544--3620	15	4.6	18	70	20	60	74	1	2	22	1.02
3753--3818	29	2.3	29	100	0	132	15	34	31	18	1.92
4732--4768	3	12.7	3	94	5	67	67	0	0	32	0.91
4771--4818	2	24.0	2	87	8	71	52	0	2	45	1.12
4991--5040	19	2.7	19	96	3	93	48	4	26	22	1.68
5175--5243	31	2.3	30	82	5	84	31	11	28	27	1.92
5178--5238	31	2.0	31	86	0	86	32	13	26	27	1.93
5186--5251	31	2.2	31	88	2	98	33	9	25	31	1.87
9505--9536	14	2.3	14	100	0	64	6	15	28	50	1.68
10005--10069	16	4.1	16	89	0	103	9	10	21	58	1.59
16202--16228	14	1.9	14	100	0	54	22	33	14	29	1.94
21023--21106	42	2.0	42	97	0	159	38	17	19	25	1.93
22450--22482	17	1.9	17	88	11	50	78	0	18	3	0.87
25993--26017	13	1.9	13	100	0	50	24	0	0	76	0.80
36229--36253	13	1.9	13	100	0	50	24	0	0	76	0.80
41177--41222	21	2.2	21	84	7	58	71	0	26	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41973--42750	105	7.4	105	93	0	1295	33	25	18	22	1.97
43256--43288	15	2.2	15	89	10	50	21	0	0	78	0.75
48774--48870	50	2.0	48	93	4	167	13	12	23	50	1.75
65314--65391	33	2.4	33	85	8	97	38	0	1	60	1.05
67111--67158	21	2.3	21	85	0	60	25	39	12	22	1.89
67165--67255	21	4.3	22	88	5	118	18	32	26	21	1.97
67777--67873	33	2.9	34	85	3	133	55	4	3	37	1.35
67775--67880	34	3.2	33	82	8	133	54	4	2	37	1.36
68266--68768	128	3.9	128	98	0	961	32	19	25	22	1.98
68836--68876	8	5.2	8	82	5	57	36	29	0	34	1.58
76377--76442	34	1.9	34	87	0	96	40	4	6	48	1.48
84916--84960	22	2.0	22	100	0	90	22	26	37	13	1.91
84985--85027	23	1.9	22	90	4	68	72	4	0	23	1.04
87629--87713	34	2.5	35	88	1	127	20	31	27	21	1.97
87825--87866	21	2.0	21	100	0	84	23	19	28	28	1.98
87895--87934	20	1.9	21	85	10	55	37	37	10	15	1.80
88149--88218	34	2.1	32	86	5	95	32	15	28	22	1.95
91179--91238	20	3.0	20	82	4	77	21	33	28	16	1.95
91204--91288	34	2.5	35	90	1	127	21	32	25	20	1.97
91401--91442	21	2.0	21	90	0	66	26	21	26	26	1.99
91725--91794	34	2.1	32	81	5	77	32	14	27	25	1.94
93713--93757	23	2.0	23	90	0	72	24	26	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93736--94041	151	2.0	149	96	1	558	35	20	15	29	1.93
95400--95524	64	1.9	66	90	6	202	27	20	16	35	1.94
95400--95542	64	2.2	64	86	8	193	27	21	16	34	1.95
98748--99047	154	2.0	146	92	7	496	31	8	22	37	1.85
105402--105436	2	17.5	2	100	0	70	51	0	48	0	1.00
106578--106690	50	2.3	50	87	0	154	14	35	30	20	1.92
106934--107155	111	2.0	111	93	1	383	36	8	10	45	1.69
112810--112936	50	2.5	50	84	0	146	22	29	33	14	1.94
113825--113874	18	2.8	17	80	14	57	80	0	14	6	0.90
113791--113878	26	3.5	26	74	14	85	77	0	17	5	0.96
113874--113906	12	2.6	13	85	4	50	66	0	33	0	0.92
113905--113939	13	2.5	14	90	9	54	68	0	25	5	1.11
118054--118096	22	2.0	21	86	4	59	41	2	0	55	1.12
119556--119651	46	2.1	46	86	7	133	27	21	11	39	1.88
119993--120221	55	4.2	55	85	3	293	36	16	11	34	1.85
120385--120471	36	2.4	36	92	0	138	9	21	21	47	1.79
124517--124572	20	2.8	20	88	0	76	32	16	12	39	1.85
133019--133133	61	1.9	61	89	3	178	23	18	27	30	1.97
133765--133806	22	1.9	22	85	0	57	23	23	11	40	1.88
136906--136948	12	3.8	12	75	12	54	20	23	18	37	1.94

Tables:   1

The End!