genome.fa.s1720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001720.1 Hibiscus syriacus cultivar Beakdansim tig00003480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117292

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2262	2	1172.5	2	90	7	3637	50	49	0	0	1.00
11141--11199	30	2.0	30	87	12	86	66	3	3	27	1.24
11225--11249	5	5.0	5	100	0	50	80	0	0	20	0.72
11226--11266	21	2.0	21	85	0	55	73	0	0	26	0.84
12440--12499	31	1.9	32	89	3	95	31	21	13	33	1.92
13976--14000	2	12.5	2	100	0	50	52	0	0	48	1.00
14900--14959	30	2.0	30	100	0	120	23	26	6	43	1.78
15241--15288	17	3.0	15	77	14	51	56	27	2	14	1.50
17228--17289	22	2.8	22	95	0	106	9	24	40	25	1.85
23039--23156	51	2.3	51	98	0	227	29	18	22	28	1.98
24401--24506	41	2.6	40	86	2	151	16	23	39	20	1.92
24402--24517	20	5.8	20	78	3	117	16	25	37	21	1.94
29161--29356	98	2.0	98	96	0	365	37	10	16	35	1.83
29959--29990	14	2.1	16	88	11	50	15	15	18	50	1.79
30252--30295	10	4.1	10	83	16	61	9	9	20	61	1.53
30252--30296	23	2.0	23	100	0	90	8	8	20	62	1.51
30259--30298	13	3.3	13	73	20	50	12	7	17	62	1.52
38514--38542	2	14.5	2	100	0	58	48	0	0	51	1.00
39480--39506	3	9.0	3	100	0	54	33	0	33	33	1.58
39722--39758	13	2.8	13	91	0	56	27	0	5	67	1.12
40722--40761	20	2.0	21	85	14	57	42	5	7	45	1.54
40931--41137	65	3.2	63	83	7	229	30	24	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40978--41141	65	2.5	65	86	1	231	30	26	15	27	1.96
47997--48032	2	18.0	2	100	0	72	50	0	0	50	1.00
48269--48308	20	2.0	21	85	14	57	42	5	7	45	1.54
48478--48684	65	3.2	63	83	7	229	30	24	16	28	1.96
48525--48688	65	2.5	65	86	1	231	30	26	15	28	1.96
48772--48806	17	2.1	17	100	0	70	22	31	28	17	1.96
53130--53170	2	20.5	2	100	0	82	48	0	0	51	1.00
53675--53709	18	2.0	17	94	5	61	20	11	0	68	1.20
53680--53709	15	2.1	15	93	6	53	20	10	0	70	1.16
54379--54403	2	12.5	2	100	0	50	48	0	0	52	1.00
56127--56154	2	14.0	2	100	0	56	50	0	0	50	1.00
58398--58426	12	2.3	13	94	5	51	44	0	0	55	0.99
58506--58610	53	2.0	52	88	1	156	22	25	11	40	1.88
60522--60640	3	39.7	3	91	3	195	34	0	0	64	0.99
61406--61434	13	2.2	13	100	0	58	0	31	62	6	1.22
64394--64446	14	3.7	14	85	5	70	22	13	9	54	1.67
64485--64544	27	2.3	26	82	2	75	21	11	8	58	1.59
65884--65909	1	26.0	1	100	0	52	100	0	0	0	0.00
66498--66543	6	7.3	6	87	7	65	78	0	21	0	0.76
68680--68888	83	2.5	83	99	0	409	26	14	22	36	1.92
71492--71568	22	3.5	22	90	0	127	33	14	14	37	1.86
71971--73096	113	9.9	113	94	0	1910	36	15	19	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73391--73503	3	37.7	3	94	0	199	33	0	0	65	0.99
74268--74296	13	2.2	13	100	0	58	0	31	62	6	1.22
85424--85461	20	1.9	20	88	0	58	26	18	7	47	1.76
85905--85981	24	3.1	24	74	9	75	44	9	5	41	1.58
85897--86062	82	2.0	83	82	11	207	43	6	4	45	1.49
85984--86071	25	3.9	23	79	13	94	45	4	3	46	1.40
86091--86140	25	2.0	25	88	0	73	52	10	0	38	1.35
86091--86290	23	8.8	23	72	18	104	45	8	2	44	1.46
86073--86214	74	1.9	72	87	2	203	43	9	2	44	1.49
86160--86290	20	6.1	21	76	15	119	44	6	2	47	1.40
86160--86290	23	6.2	20	77	15	106	44	6	2	47	1.40
86658--86751	20	4.7	20	81	2	116	41	19	19	20	1.91
87320--87380	14	4.0	14	73	19	50	44	24	22	8	1.80
87299--87391	33	2.8	33	90	1	132	43	25	21	9	1.83
87333--87391	19	3.4	18	71	22	54	45	27	18	8	1.78
87387--87494	33	3.1	33	75	10	99	12	24	19	44	1.84
89446--89534	42	2.1	42	80	0	106	21	38	16	23	1.93
91048--91095	19	2.5	20	89	3	80	43	20	22	12	1.86
91102--91190	19	4.7	19	95	0	160	16	20	16	46	1.85
91102--91248	19	7.9	19	83	10	142	17	22	19	40	1.91
91197--91249	20	2.7	20	93	0	88	22	22	22	32	1.98
91715--92057	20	17.0	20	82	5	338	34	19	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91715--92099	41	9.5	41	86	4	358	34	18	18	27	1.95
91852--92083	20	11.5	21	87	4	162	29	20	18	31	1.96
92073--92125	21	2.5	21	78	0	61	33	16	26	22	1.96
96678--96723	14	3.1	15	75	12	51	47	21	0	30	1.51
97186--97256	25	3.0	24	72	24	69	66	7	1	25	1.25
97295--97337	17	2.4	19	80	11	54	76	2	11	9	1.10
97565--97602	12	3.1	12	92	7	67	76	0	7	15	1.01
97565--97600	13	2.8	13	95	4	65	77	0	8	13	0.98
98207--98253	24	2.0	23	84	8	60	19	17	12	51	1.77
98669--98701	2	17.0	2	87	6	50	54	0	0	45	0.99
100597--100672	35	2.2	35	87	0	107	42	22	0	35	1.54
102480--102555	34	2.2	35	80	2	91	42	0	18	39	1.50
103302--103357	29	1.9	29	81	0	67	48	14	1	35	1.54
105693--105719	14	1.9	14	100	0	54	66	3	0	29	1.09
107354--107394	2	20.5	2	89	0	64	43	0	4	51	1.23
109922--109994	28	2.6	28	89	2	112	42	5	8	43	1.57
110078--110151	32	2.4	30	80	10	96	45	12	8	33	1.71
116885--116949	29	2.2	29	81	5	78	35	3	24	36	1.71

Tables:   1

The End!