Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001723.1 Hibiscus syriacus cultivar Beakdansim tig00003485_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54178

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168--211
15
3.0
15
81
15
56
4
45
0
50
1.22
179--221
18
2.4
18
80
7
52
2
39
0
58
1.11
405--465
32
1.9
32
89
0
95
22
47
0
29
1.52
499--542
21
2.1
21
91
0
70
15
31
11
40
1.83
2723--2764
19
2.3
18
88
8
59
21
14
11
52
1.73
2903--2960
19
3.1
18
82
7
71
17
15
13
53
1.73
2993--3674
221
3.1
222
91
6
1072
39
8
7
44
1.63
15767--15792
3
8.7
3
100
0
52
34
0
0
65
0.93
19692--19725
2
17.0
2
88
11
52
47
0
2
50
1.16
19826--19869
16
2.9
15
76
6
52
20
6
2
70
1.21
21107--21135
10
2.9
10
100
0
58
20
0
0
79
0.74
31399--32373
105
9.3
105
95
0
1700
32
25
18
24
1.97
33734--33760
2
13.5
2
100
0
54
48
0
0
51
1.00
33949--33990
2
21.0
2
90
9
68
47
0
2
50
1.14
34091--34133
16
2.9
15
76
10
52
20
6
2
69
1.23
34963--34992
2
15.0
2
100
0
60
50
0
0
50
1.00
35209--35252
16
2.9
15
76
6
52
70
2
6
20
1.21
36979--38242
105
12.0
105
94
1
2169
23
18
25
32
1.97
48497--48525
10
2.9
10
100
0
58
79
0
0
20
0.74
49769--49811
16
2.9
15
76
10
52
69
2
6
20
1.23
49912--49957
2
23.0
2
91
8
76
50
2
0
47
1.13
52452--52553
29
3.5
30
81
15
117
18
23
22
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52880--52956
25
3.1
24
83
10
93
42
0
20
36
1.53
52768--53140
186
2.0
187
88
9
566
36
7
16
39
1.78
53078--53142
25
2.6
24
83
11
78
44
0
18
36
1.50
53745--53789
2
24.0
2
86
13
69
48
0
0
51
1.00

Tables:   1

The End!