genome.fa.s1724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001724.1 Hibiscus syriacus cultivar Beakdansim tig00003487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146287

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1146--1207	21	2.9	21	77	11	72	32	25	24	17	1.97
2044--2477	66	6.6	65	79	10	431	27	16	14	41	1.87
2044--2477	196	2.2	198	83	5	540	27	16	14	41	1.87
2436--2530	35	2.7	36	88	3	138	26	17	13	42	1.87
2532--2935	136	3.0	136	83	4	465	28	27	16	27	1.97
4136--4199	29	2.2	29	85	0	83	29	12	4	53	1.59
4410--4458	16	3.0	17	82	5	57	28	28	2	40	1.68
4709--4747	14	2.8	14	88	0	51	20	5	2	71	1.17
4709--4767	28	2.1	27	81	9	66	23	5	5	66	1.32
9852--9895	20	2.1	21	83	8	54	72	2	0	25	0.96
11218--11256	19	2.1	19	85	0	51	35	2	0	61	1.10
13937--13967	12	2.6	12	94	0	53	9	19	48	22	1.78
14057--14132	36	2.1	35	92	2	125	17	32	13	36	1.88
15518--15546	10	2.9	10	100	0	58	10	10	48	31	1.71
15562--15591	15	2.0	15	100	0	60	20	20	26	33	1.97
16798--16830	14	2.3	15	85	15	52	39	0	0	60	0.97
17308--17667	185	1.9	186	88	2	537	35	12	15	37	1.85
21992--22028	15	2.5	15	91	4	58	54	8	32	5	1.53
35787--35832	2	23.0	2	100	0	92	50	0	0	50	1.00
38216--38279	3	21.0	3	84	9	85	60	0	0	39	0.97
38205--38279	25	2.9	25	94	6	123	58	0	0	41	0.98
38409--39205	76	10.5	76	98	0	1504	35	21	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39881--39935	22	2.5	22	90	0	92	38	14	12	34	1.84
40299--40417	54	2.3	52	86	4	159	24	20	15	39	1.91
41283--41452	74	2.3	74	83	3	207	29	19	16	34	1.94
42535--42760	114	2.0	114	93	0	389	31	21	15	32	1.94
47545--47584	21	1.9	21	94	0	71	55	10	12	22	1.67
50360--50402	12	3.3	13	75	12	52	51	0	2	46	1.13
50365--50410	14	3.4	14	76	11	60	54	0	4	41	1.20
50353--50415	26	2.4	26	100	0	126	55	0	3	41	1.16
51808--51884	11	7.0	11	77	14	70	58	0	0	41	0.98
51819--51885	3	22.0	3	85	8	91	61	0	0	38	0.96
51808--51885	28	2.8	28	96	3	140	58	0	0	41	0.98
62629--62696	31	2.2	31	84	5	93	41	4	8	45	1.55
62685--62727	23	1.9	23	86	13	63	37	2	11	48	1.52
66262--66315	20	2.7	20	79	2	63	35	27	14	22	1.93
67722--67768	20	2.3	20	92	0	76	36	25	17	21	1.94
67742--67952	40	5.3	40	72	16	161	38	23	17	20	1.93
67765--68048	20	14.1	20	75	14	146	39	23	15	21	1.91
67742--67890	60	2.5	60	81	10	187	38	24	16	20	1.92
67717--67968	140	1.8	140	89	3	400	38	23	16	21	1.93
67773--68048	40	6.9	39	77	13	224	39	22	15	21	1.92
68115--68327	57	3.8	57	94	0	365	37	20	14	27	1.91
68368--68412	20	2.2	20	92	0	72	20	15	24	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80247--80305	31	2.0	29	83	6	73	38	11	5	44	1.63
82799--82823	12	2.1	12	100	0	50	0	0	8	92	0.40
103859--103886	2	14.0	2	100	0	56	50	0	0	50	1.00
104689--104795	44	2.4	44	98	0	205	32	13	20	33	1.91
121946--122012	27	2.5	27	87	0	107	31	16	13	38	1.87
122066--122162	29	3.3	29	98	0	185	29	16	22	30	1.96
127527--127577	20	2.5	20	90	6	77	23	13	33	29	1.93
129785--129823	19	2.1	19	100	0	78	30	20	0	48	1.50
135601--135665	20	3.3	20	76	8	80	26	30	18	24	1.98
140068--140141	29	2.6	29	86	4	96	39	6	9	44	1.63
140176--140244	30	2.2	30	82	15	86	36	5	17	40	1.74
140185--140244	29	2.0	31	90	6	97	35	6	16	41	1.75
140371--140412	21	2.0	21	95	0	75	23	21	28	26	1.99
140440--140479	20	1.9	21	85	10	55	37	37	10	15	1.80
142180--142297	60	2.0	60	86	0	164	37	4	23	34	1.75
142580--142608	15	1.9	15	100	0	58	20	51	20	6	1.70

Tables:   1

The End!