genome.fa.s1725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001725.1 Hibiscus syriacus cultivar Beakdansim tig00003488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51964

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203--240	18	2.1	18	85	9	51	44	5	0	50	1.24
1527--1551	13	1.9	13	100	0	50	60	0	0	40	0.97
2376--2417	20	2.0	21	90	4	68	61	2	0	35	1.09
6370--6431	31	2.0	31	100	0	124	19	32	9	38	1.84
12983--13040	24	2.4	24	100	0	116	34	3	31	31	1.74
13111--13161	16	3.0	18	75	13	63	33	11	15	39	1.84
13113--13167	18	3.2	17	75	15	60	30	10	16	41	1.83
13113--13211	33	3.0	33	87	1	135	28	14	19	38	1.90
14715--14797	28	3.0	28	82	8	98	33	38	0	27	1.57
21633--21742	39	2.9	37	83	9	134	26	19	16	38	1.92
21633--21952	36	9.1	35	72	14	196	29	20	13	37	1.90
21690--21881	66	2.9	66	79	7	228	30	20	11	38	1.88
22419--22575	44	3.7	42	75	9	147	27	19	23	29	1.98
22422--22619	85	2.3	87	90	2	301	26	19	24	29	1.98
22476--23588	44	25.3	43	62	14	175	28	19	21	29	1.98
22507--23662	133	8.8	133	85	3	1525	28	20	21	30	1.98
22507--23662	262	4.4	262	86	3	1582	28	20	21	30	1.98
22507--23652	529	2.2	528	88	2	1696	28	19	21	30	1.98
23959--24046	28	3.2	27	81	9	106	32	39	0	27	1.57
26586--26614	14	2.1	14	100	0	58	58	0	6	34	1.25
29411--29499	33	2.7	33	89	6	135	28	11	23	37	1.89
32241--32325	42	2.0	42	100	0	170	32	11	23	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35517--35550	16	2.1	16	88	0	50	29	26	11	32	1.92
39404--39449	20	2.3	20	100	0	92	34	15	17	32	1.91
43916--44269	178	2.0	179	96	0	656	34	23	9	32	1.88
46958--46994	15	2.4	16	95	4	67	43	0	5	51	1.24
48249--48280	2	16.0	2	100	0	64	50	0	0	50	1.00
49460--49546	41	2.1	41	86	0	120	20	18	43	17	1.88
49481--49572	40	2.3	41	88	1	132	18	18	40	22	1.92

Tables:   1

The End!