genome.fa.s1727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001727.1 Hibiscus syriacus cultivar Beakdansim tig00003491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83694

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415--535	54	2.2	54	89	0	179	23	19	25	31	1.98
2076--2150	31	2.4	31	88	0	114	44	9	6	40	1.63
3069--3104	12	2.9	12	87	4	54	11	22	47	19	1.80
3764--3823	31	2.0	31	86	3	86	18	15	33	33	1.92
8822--8871	23	2.2	23	96	0	91	10	34	20	36	1.86
9887--10240	188	1.9	188	82	3	453	45	8	5	40	1.58
10536--10560	11	2.3	11	100	0	50	32	8	24	36	1.84
15940--16080	63	2.2	64	87	2	194	48	7	4	39	1.52
16597--16630	16	2.1	17	94	5	61	29	5	14	50	1.67
33233--33285	24	2.2	25	86	6	74	52	5	1	39	1.36
34256--34306	22	2.2	22	86	6	66	23	9	5	60	1.50
34294--34347	20	2.8	20	88	2	83	16	12	14	55	1.69
38310--38353	20	2.2	20	91	0	70	47	18	25	9	1.77
38674--38722	2	24.5	2	100	0	98	48	0	0	51	1.00
45005--45033	12	2.3	13	94	5	51	13	13	37	34	1.85
55413--55451	2	19.5	2	100	0	78	51	0	0	48	1.00
55832--55981	60	2.5	59	77	9	162	41	5	20	33	1.75
60873--61090	21	10.6	21	76	14	197	30	23	21	25	1.99
60935--61114	41	4.4	41	75	13	183	31	21	20	26	1.98
60926--61083	81	2.0	80	98	1	307	30	22	20	26	1.98
61037--61100	20	3.2	20	75	20	78	35	18	20	25	1.95
61102--61159	21	2.8	21	91	0	98	24	22	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61293--61335	6	7.5	6	97	2	72	30	53	16	0	1.43
61942--62065	21	5.8	21	75	16	121	36	21	20	20	1.95
61935--62074	42	3.3	42	93	0	244	35	22	20	22	1.96
61935--62080	21	6.9	20	72	16	118	34	21	21	21	1.96
71948--72511	146	3.9	146	90	1	889	34	20	14	30	1.93
71952--72511	291	1.9	292	91	0	924	34	20	14	30	1.93
76535--76661	52	2.4	52	79	11	134	42	2	4	50	1.36
77245--77286	20	2.2	19	88	12	68	23	28	9	38	1.86
77392--77427	18	2.0	18	89	10	56	47	0	0	52	1.00
78981--79060	38	2.1	39	88	2	117	37	1	2	58	1.19
80526--80567	19	2.2	19	87	8	59	38	2	2	57	1.25
81198--81458	21	12.6	21	72	14	220	19	20	26	33	1.97
81223--81458	42	5.7	41	96	1	395	19	19	26	33	1.96

Tables:   1

The End!