genome.fa.s1728.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001728.1 Hibiscus syriacus cultivar Beakdansim tig00003493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128489

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678--727	26	1.9	26	95	0	91	30	14	16	40	1.87
1320--1357	2	18.5	2	94	5	67	47	0	2	50	1.15
5795--5830	2	18.0	2	100	0	72	50	0	0	50	1.00
6613--6647	18	1.9	18	94	0	61	20	0	5	74	1.02
7218--7260	23	1.9	21	86	13	59	32	0	13	53	1.41
7647--7671	13	1.9	13	100	0	50	68	0	0	32	0.90
15391--15432	22	1.9	22	85	0	57	47	2	14	35	1.57
20226--20280	24	2.4	23	78	6	58	32	3	5	58	1.38
20461--20509	25	2.0	25	83	0	62	40	2	4	53	1.32
31752--31794	18	2.4	18	96	3	79	62	4	0	32	1.15
34935--34996	24	2.6	24	89	0	88	29	41	8	20	1.81
37116--37175	3	20.3	3	82	3	77	31	0	3	65	1.09
37966--38008	22	2.0	21	86	4	59	9	41	32	16	1.80
38580--38725	30	4.9	30	84	4	172	16	13	7	62	1.53
38580--38725	60	2.5	60	85	5	206	16	13	7	62	1.53
47025--47079	3	18.3	3	100	0	110	67	0	0	32	0.91
49029--49149	60	2.0	60	96	0	224	20	30	14	34	1.92
49568--49594	2	13.5	2	100	0	54	48	0	0	51	1.00
51745--51811	11	5.9	11	77	6	62	35	17	20	25	1.95
51745--51812	23	3.0	23	93	0	109	35	19	20	25	1.96
51756--51800	12	3.8	12	82	5	65	37	22	20	20	1.94
59724--59769	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61291--61769	51	9.2	51	89	5	586	28	25	15	29	1.96
61257--61453	55	3.6	56	81	6	197	30	23	16	29	1.96
61419--61777	51	7.0	51	98	0	673	26	27	16	29	1.97
61257--61777	102	5.0	102	87	4	668	28	25	15	29	1.96
62902--62933	15	2.1	15	100	0	64	6	12	0	81	0.87
62913--62970	24	2.5	23	81	15	66	5	13	0	81	0.86
62928--62989	30	2.1	31	84	6	83	6	16	1	75	1.08
72671--72776	47	2.2	49	84	5	144	43	18	11	26	1.84
84147--84182	2	18.5	2	94	5	65	50	0	0	50	1.00
84817--84878	8	8.1	8	80	7	58	24	0	1	74	0.91
84817--84851	15	2.3	15	90	9	54	17	0	0	82	0.66
84817--84851	7	4.7	7	89	10	52	17	0	0	82	0.66
84839--84893	16	3.5	16	72	20	53	27	0	3	69	1.05
84829--84879	15	3.5	15	75	15	54	23	0	1	74	0.92
85885--85917	13	2.5	13	86	13	50	3	27	0	69	1.03
85879--85937	21	2.9	20	78	9	57	6	25	0	67	1.15
86961--87182	112	2.0	108	86	11	308	16	24	29	28	1.97
90850--91383	8	71.8	8	70	20	304	40	3	6	49	1.44
90894--91234	37	9.3	36	83	11	142	39	4	6	49	1.48
91144--91336	31	5.8	31	79	18	194	40	2	7	50	1.42
90848--91341	23	20.3	23	74	13	229	40	3	6	49	1.45
90824--91425	14	45.9	13	70	18	323	40	3	5	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91883--91907	6	4.2	6	100	0	50	20	64	0	16	1.30
93649--94007	172	2.1	173	90	1	569	37	18	5	39	1.73
94521--94574	22	2.5	22	87	0	90	16	35	18	29	1.93
105574--105674	27	3.9	27	85	7	145	34	15	15	33	1.90
105568--105699	51	2.6	51	90	2	203	34	15	14	36	1.87
105567--105699	27	5.2	26	76	12	123	33	15	14	36	1.87
105658--105755	41	2.4	39	83	8	117	36	12	11	39	1.78
121926--121960	17	2.1	17	88	0	52	45	5	37	11	1.64
122449--122476	8	3.5	8	100	0	56	39	0	10	50	1.37
125956--126006	11	4.5	11	75	18	50	78	0	11	9	0.97
125960--126003	24	1.9	22	86	9	61	79	0	9	11	0.93
125994--126035	15	2.9	14	89	7	57	73	0	19	7	1.05
125987--126095	14	7.8	14	67	23	61	70	0	20	8	1.18
125970--126107	60	2.2	60	77	11	138	72	0	17	9	1.15
127377--127445	34	2.0	34	88	11	104	36	21	21	20	1.95
127459--127856	50	7.5	54	77	12	314	29	15	24	31	1.95
127515--127799	106	2.6	109	84	7	350	29	15	22	32	1.95
127515--127856	106	3.2	107	79	10	337	29	14	23	31	1.95

Tables:   1

The End!