Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001730.1 Hibiscus syriacus cultivar Beakdansim tig00003495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56325

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4504--4543
17
2.5
15
88
8
53
52
2
0
45
1.14
4591--4632
16
2.6
16
88
0
66
42
11
7
38
1.69
4663--4724
14
4.7
14
75
15
51
45
6
1
46
1.38
4668--4847
11
14.6
12
69
18
77
48
8
1
41
1.40
4972--5015
23
2.0
23
86
4
63
45
9
11
34
1.72
4995--5036
16
2.6
16
88
0
66
42
11
7
38
1.69
5063--5243
13
14.7
11
69
21
78
45
9
2
41
1.52
5096--5203
14
8.1
14
73
15
86
44
12
2
40
1.56
5072--5325
52
5.0
51
75
15
166
47
10
2
39
1.50
5179--5224
21
2.2
20
82
17
58
52
8
0
39
1.33
5255--5326
35
2.0
37
91
5
121
52
9
0
37
1.34
5285--5366
21
3.9
21
71
17
64
51
7
1
40
1.38
8779--8838
17
3.4
17
84
13
84
46
10
0
43
1.37
9080--9110
4
7.8
4
100
0
62
51
22
0
25
1.48
9467--9583
50
2.4
50
80
10
138
52
9
0
37
1.40
9541--9603
28
2.2
30
94
5
112
57
12
0
30
1.36
9545--9610
28
2.4
28
87
10
107
56
12
0
31
1.36
9580--9628
21
2.3
21
85
3
71
53
16
0
30
1.43
9823--9893
22
3.0
24
79
12
83
30
11
26
30
1.91
19360--19607
36
6.9
36
90
0
352
17
25
23
33
1.96
27214--27333
27
4.4
27
92
4
206
26
18
16
38
1.92
37006--37061
24
2.3
24
96
0
103
30
17
14
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38235--38274
21
1.9
21
85
10
55
30
12
20
37
1.89
39780--39860
23
3.5
22
75
11
72
17
20
17
44
1.87
43316--43343
2
14.0
2
100
0
56
50
0
0
50
1.00
45702--45761
20
3.0
20
76
9
52
35
30
10
25
1.88
45800--45976
20
8.8
20
76
9
101
31
22
11
34
1.90
45726--45875
82
1.8
81
87
7
223
28
26
12
32
1.93
45767--45875
21
5.3
20
74
10
78
26
25
13
33
1.93
45931--45995
20
3.3
20
85
6
89
29
23
12
35
1.91
46133--46170
16
2.5
15
84
12
51
28
5
0
65
1.14
49212--49247
18
2.0
18
94
0
63
55
25
0
19
1.43
49460--49532
29
2.5
29
90
0
110
32
15
21
30
1.94
51034--51083
21
2.4
21
86
0
64
24
20
32
24
1.98
51426--51565
60
2.3
63
90
3
214
33
30
12
22
1.92
51488--51648
21
7.7
21
67
8
76
32
34
13
19
1.90
53338--53375
20
1.9
20
88
0
58
18
13
21
47
1.82
53690--53740
22
2.3
22
79
0
57
17
19
41
21
1.91
53844--53881
20
2.0
20
84
5
51
44
13
15
26
1.83
53905--53945
20
2.0
20
90
0
64
24
14
21
39
1.91

Tables:   1

The End!