Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001731.1 Hibiscus syriacus cultivar Beakdansim tig00003496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68530

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8494--8613
60
2.0
61
85
4
163
28
23
20
27
1.99
10822--10858
14
2.8
14
88
8
51
72
0
13
13
1.11
11170--11215
24
2.0
23
82
4
56
73
0
4
21
1.00
11288--11353
2
33.0
2
100
0
132
50
0
0
50
1.00
11541--11576
18
2.1
18
89
5
56
66
2
5
25
1.27
12684--12720
15
2.5
15
95
0
65
16
0
0
83
0.64
12683--12721
12
3.4
11
83
13
51
17
0
0
82
0.68
16178--16216
11
3.7
10
83
10
51
79
7
12
0
0.93
16173--16221
21
2.3
21
86
6
73
79
6
14
0
0.91
16171--16227
21
2.5
22
80
13
71
78
7
14
0
0.94
16165--16216
16
3.3
15
82
12
61
78
7
13
0
0.94
16173--16234
21
2.9
22
78
9
65
77
8
12
1
1.06
16171--16228
19
3.1
19
76
14
75
79
6
13
0
0.93
16164--16234
37
1.9
37
94
0
124
76
9
12
1
1.09
17289--17324
18
2.0
18
94
0
63
16
8
33
41
1.78
17813--17888
36
2.1
37
92
7
129
23
23
15
36
1.94
18020--18121
37
2.7
37
75
6
98
24
20
12
42
1.87
18060--18130
37
1.9
37
82
0
88
26
21
11
40
1.87
18723--18945
110
2.0
110
86
7
308
32
22
18
25
1.97
18778--19094
162
2.0
160
85
5
431
34
22
18
24
1.96
18943--19451
106
4.8
106
87
3
731
34
23
18
22
1.96
20670--20709
18
2.3
18
83
8
57
25
5
2
67
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20771--20799
2
14.5
2
100
0
58
48
0
0
51
1.00
24785--24816
14
2.3
14
94
0
55
18
3
28
50
1.62
29623--29653
15
2.0
16
93
6
55
51
3
0
45
1.17
38658--38709
21
2.5
21
96
0
95
42
0
40
17
1.49
39363--39407
20
2.2
21
88
4
65
57
13
11
17
1.64
43745--43814
12
5.8
12
73
6
61
17
14
17
51
1.77
43746--43818
24
3.0
24
77
0
92
19
12
16
52
1.75
57277--57639
186
2.0
185
94
1
638
40
3
9
46
1.55
57739--57816
30
2.6
30
97
0
147
32
25
20
21
1.98
58198--58402
94
2.2
95
83
2
261
35
15
23
25
1.94
58247--58420
95
1.8
94
82
3
224
35
14
24
25
1.93
58744--59235
54
9.1
54
91
0
750
26
17
21
34
1.96
59219--59389
59
2.9
59
88
2
229
35
9
20
33
1.86
61249--61285
15
2.5
15
90
0
56
29
21
10
37
1.88
63069--63133
30
2.1
32
94
5
116
23
3
30
43
1.69

Tables:   1

The End!