Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001733.1 Hibiscus syriacus cultivar Beakdansim tig00003498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49543

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--801
21
2.3
21
86
10
64
16
4
8
71
1.26
1863--1983
61
2.0
62
88
4
183
28
20
23
28
1.99
1864--1997
62
2.2
61
85
5
171
29
20
22
28
1.98
11086--11125
21
1.9
21
85
10
55
35
10
2
52
1.48
20974--21049
17
4.8
15
79
12
55
43
5
1
50
1.33
20992--21052
2
32.5
2
75
18
60
44
1
1
52
1.20
21187--21234
22
2.2
22
81
7
53
35
37
14
12
1.84
22234--22363
55
2.4
55
80
10
149
28
7
2
61
1.36
22343--22369
3
9.0
3
100
0
54
33
0
0
66
0.92
22389--22532
12
11.7
12
70
17
66
18
4
2
74
1.12
22473--22532
13
4.5
12
79
18
66
20
1
0
78
0.84
22491--22526
4
8.8
4
87
6
54
22
0
0
77
0.76
22473--22564
36
2.6
34
83
11
98
19
5
0
75
1.00
36775--36809
8
4.4
8
85
0
52
40
0
0
60
0.97
36796--36909
35
3.2
36
77
3
106
49
0
1
48
1.17
38899--39019
60
2.0
60
88
0
179
39
21
8
30
1.83
39335--39367
16
2.0
17
88
5
50
45
3
9
42
1.51
39492--39576
28
3.1
27
86
6
118
28
9
20
42
1.83
41901--41938
7
5.4
7
96
0
67
0
28
18
52
1.45

Tables:   1

The End!