genome.fa.s1735.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001735.1 Hibiscus syriacus cultivar Beakdansim tig00003506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109095

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2656--2710	19	2.8	20	71	18	53	69	1	10	18	1.27
2747--2785	20	2.0	20	94	0	69	64	2	10	23	1.37
3935--3980	15	3.1	14	79	14	56	80	0	0	19	0.71
3935--3980	23	2.0	23	86	0	65	80	0	0	19	0.71
4026--4388	32	10.4	35	70	21	162	44	6	2	47	1.42
4027--4107	42	2.0	41	80	11	94	44	2	2	50	1.28
4290--4385	35	2.6	38	73	15	85	43	8	3	44	1.50
4392--4420	12	2.5	12	94	5	51	86	0	0	13	0.58
4392--4433	16	2.5	18	81	14	54	83	0	4	11	0.79
6163--6217	25	2.2	26	86	3	76	69	5	12	12	1.35
11461--11517	25	2.2	25	81	9	71	70	7	12	10	1.34
11480--11519	21	2.0	20	95	5	71	70	5	12	12	1.33
13261--13289	14	2.1	14	100	0	58	13	13	17	55	1.70
16689--16759	35	2.0	35	97	0	133	32	23	8	35	1.85
17896--17940	21	2.1	21	100	0	90	51	8	13	26	1.70
19349--19396	10	4.4	10	80	19	60	12	10	18	58	1.62
19329--19393	24	2.8	23	88	2	85	12	10	16	60	1.59
33502--33548	3	15.7	3	95	0	85	65	2	0	31	1.04
36508--36653	43	3.4	43	75	0	121	32	15	17	34	1.91
37392--37444	25	2.1	25	96	0	97	45	15	11	28	1.80
38962--39061	40	2.4	41	86	5	139	36	15	24	25	1.94
39350--39454	19	5.2	19	84	13	129	34	5	27	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39347--39449	44	2.5	39	83	10	127	32	5	28	33	1.81
40201--40231	16	1.9	16	93	0	53	77	6	9	6	1.12
40225--40301	16	4.9	15	74	16	59	72	1	1	24	1.00
40224--40301	18	4.4	17	70	17	52	73	1	1	24	0.99
40257--40301	22	2.0	23	83	12	58	75	2	2	20	1.01
41761--42766	165	6.1	165	81	4	859	24	19	25	30	1.98
41781--42788	84	12.2	83	78	4	928	24	19	25	30	1.98
42129--42706	247	2.3	249	86	1	820	25	19	25	29	1.98
41808--42752	412	2.3	414	84	3	1222	24	19	26	30	1.98
46823--46853	16	1.9	16	93	0	53	80	0	9	9	0.90
46834--46872	19	2.1	19	85	0	51	79	0	2	17	0.84
46848--46947	9	10.6	10	71	21	58	71	1	1	27	0.99
48684--48741	19	2.9	20	73	17	57	37	3	6	51	1.46
48725--48788	24	2.7	24	80	0	65	40	7	4	46	1.53
52510--52807	85	3.5	85	90	1	429	30	18	16	34	1.93
54368--54398	12	2.6	12	94	0	53	70	9	6	12	1.31
62197--62300	51	2.1	50	87	1	145	25	33	25	15	1.95
64418--64479	2	31.0	2	100	0	124	50	0	0	50	1.00
67875--67988	20	5.7	20	79	6	95	32	24	17	25	1.97
68577--68684	20	5.8	19	75	14	82	13	24	19	42	1.87
70782--70940	42	3.8	42	81	1	194	22	37	18	22	1.94
70774--70949	84	2.1	84	96	0	325	21	36	17	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70786--70979	42	4.6	41	74	9	158	23	35	19	22	1.96
70774--70979	84	2.5	84	90	1	270	22	35	18	23	1.96
71839--71883	18	2.5	18	88	0	72	15	13	42	28	1.85
73504--73547	22	2.0	22	95	0	79	22	15	40	20	1.90
73716--73853	61	2.3	61	84	0	186	24	17	23	34	1.96
73716--73850	20	6.7	20	78	7	94	25	17	23	33	1.96
73921--73961	21	2.0	21	85	0	55	34	31	17	17	1.93
74176--74247	31	2.4	31	80	15	89	43	5	4	47	1.46
74353--74486	30	4.5	29	71	17	98	42	8	7	41	1.63
76186--76212	13	2.1	13	100	0	54	48	7	22	22	1.75
77522--78044	201	2.6	199	78	6	500	35	10	18	35	1.86
84053--84097	18	2.5	20	82	17	62	82	4	6	6	0.95
87089--87144	21	2.6	22	78	13	71	32	16	10	41	1.82
100705--100745	20	2.0	20	100	0	82	4	19	19	56	1.60

Tables:   1

The End!