genome.fa.s1737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001737.1 Hibiscus syriacus cultivar Beakdansim tig00003510_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55922

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417--493	26	3.0	25	80	14	93	27	10	22	40	1.86
412--498	26	3.2	28	77	14	92	29	9	20	40	1.84
2699--2729	7	4.4	7	95	0	53	0	29	19	51	1.47
3139--4068	462	2.0	467	95	1	1699	37	16	13	32	1.89
12880--13035	64	2.4	65	87	7	228	28	19	23	28	1.98
18677--18709	16	2.1	16	88	11	50	81	0	6	12	0.85
24142--24257	14	8.1	14	73	13	94	76	0	18	3	0.97
24137--24260	46	3.0	39	75	22	126	76	0	19	3	0.97
25467--25530	32	2.0	31	82	8	76	31	7	9	51	1.62
25764--25801	17	2.2	17	86	9	51	44	0	5	50	1.24
25813--25849	18	2.1	18	90	5	58	32	5	5	56	1.45
27764--27801	3	12.7	3	100	0	76	65	0	0	34	0.93
31647--31732	45	1.9	45	95	0	154	27	24	11	36	1.90
31712--32136	38	11.3	38	87	5	519	24	18	16	40	1.90
31740--32136	109	3.5	114	86	6	535	24	18	15	41	1.89
31894--32210	76	4.0	80	85	4	321	25	17	16	41	1.89
32102--32565	45	10.4	45	78	4	347	24	15	17	42	1.89
32172--32550	135	2.8	134	83	1	427	22	16	18	41	1.89
33174--33544	134	2.8	133	88	2	528	28	15	20	35	1.94
38510--38552	19	2.4	19	84	7	54	23	27	20	27	1.99
47913--47956	21	2.1	21	82	0	52	9	40	15	34	1.79
48647--48684	19	2.0	19	94	0	67	42	0	18	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49114--49146	17	1.9	17	93	0	57	27	39	18	15	1.90
49049--49252	65	3.2	64	79	12	206	31	24	18	25	1.97

Tables:   1

The End!