genome.fa.s1738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001738.1 Hibiscus syriacus cultivar Beakdansim tig00003513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164477

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3046--3079	12	2.8	12	86	13	52	35	0	20	44	1.52
8613--8683	21	3.4	21	86	0	70	39	19	21	19	1.93
12846--12902	5	11.6	5	81	10	73	21	1	1	75	0.98
32484--32558	34	2.2	34	97	2	141	41	26	12	20	1.87
36773--36806	17	2.0	17	88	0	50	23	5	0	70	1.09
45877--45917	20	2.0	21	85	4	57	39	12	7	41	1.70
48745--48778	2	17.0	2	100	0	68	50	0	0	50	1.00
62648--62694	22	2.1	22	96	0	85	19	6	27	46	1.74
70209--70233	2	12.5	2	100	0	50	48	0	0	52	1.00
72786--72848	24	2.6	25	94	5	119	20	0	33	46	1.51
72853--72913	25	2.4	25	78	13	70	31	0	16	52	1.44
74955--75004	24	2.1	24	84	0	64	34	30	2	34	1.69
83190--83267	28	2.7	29	82	13	99	52	20	0	26	1.47
83190--83276	28	3.0	27	78	13	84	55	20	0	24	1.44
84185--84223	20	2.0	20	89	0	60	41	5	23	30	1.76
84252--84294	21	2.0	21	100	0	86	13	4	48	32	1.63
84260--84305	21	2.2	21	88	0	65	19	6	43	30	1.76
86635--86689	21	2.6	21	82	0	74	41	14	7	36	1.74
89822--89869	24	2.0	24	88	4	71	14	25	12	47	1.79
89822--89878	24	2.4	23	85	2	69	15	24	17	42	1.88
93148--93192	20	2.2	20	84	11	56	22	11	24	42	1.86
98201--98610	194	2.1	193	80	2	448	37	12	11	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104816--104868	21	2.5	21	87	0	79	22	24	15	37	1.92
104858--104950	20	4.7	20	89	0	141	40	19	18	21	1.91
104858--104950	40	2.3	40	92	0	159	40	19	18	21	1.91
104937--105023	20	4.3	20	89	0	129	31	26	18	24	1.98
105870--105923	24	2.2	24	90	0	81	22	18	18	40	1.91
108298--108377	34	2.4	35	81	12	96	40	22	20	17	1.92
108391--108486	33	2.9	34	90	3	149	12	23	20	42	1.86
108413--108466	14	3.5	14	73	22	54	11	24	20	44	1.83
108592--108628	14	2.6	14	86	0	56	48	21	0	29	1.50
109187--109224	15	2.4	16	86	4	51	68	5	13	13	1.37
113470--113505	11	3.3	11	92	7	56	66	2	0	30	1.06
116286--116394	20	5.4	20	90	2	139	37	22	19	21	1.94
116439--116615	20	9.5	20	73	16	103	18	15	20	45	1.86
116407--116601	107	1.8	107	86	0	282	16	16	20	46	1.85
118498--118587	20	4.6	20	85	1	101	45	23	16	14	1.84
118924--118989	22	3.0	22	88	4	98	19	15	40	24	1.90
119183--119275	20	4.7	20	90	0	150	20	18	20	40	1.91
122969--122998	15	2.0	15	100	0	60	40	0	0	60	0.97
122971--123004	15	2.3	15	89	0	50	41	0	5	52	1.25
124202--124588	185	2.1	182	90	1	614	45	8	3	42	1.51
124879--124910	2	16.0	2	100	0	64	50	0	0	50	1.00
128226--128266	20	2.0	21	95	4	75	29	19	19	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133205--133241	18	2.0	19	89	5	58	62	5	8	24	1.44
143131--143431	151	2.0	152	92	1	498	32	18	6	42	1.76
145932--145956	5	5.0	5	100	0	50	40	0	0	60	0.97
158983--159029	23	2.0	23	83	4	58	68	12	14	4	1.36
162429--163102	334	2.0	330	88	8	999	37	12	11	38	1.80

Tables:   1

The End!