Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001739.1 Hibiscus syriacus cultivar Beakdansim tig00003518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 329412
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
File 1 of 2
Found at i:2220 original size:28 final size:27
Alignment explanation
Indices: 2166--2220 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
2156 AGATATAAGT
* *
2166 TATTATATACTATAGTTCACATTCTTA
1 TATTATACACTATAGTTCACATACTTA
* *
2193 TATTATACATTATAAGTTCATATACTTA
1 TATTATACACTAT-AGTTCACATACTTA
2221 GTTTATTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (27 bp):
TATTATACACTATAGTTCACATACTTA
Found at i:3465 original size:21 final size:21
Alignment explanation
Indices: 3441--3492 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
3431 TTTATTTATT
3441 TCATTTCATTCCTTATCTTTA
1 TCATTTCATTCCTTATCTTTA
*
3462 TCATTTCATTCCTTTTCTTTA
1 TCATTTCATTCCTTATCTTTA
3483 TCATTTCATT
1 TCATTTCATT
3493 AATCTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (21 bp):
TCATTTCATTCCTTATCTTTA
Found at i:3491 original size:26 final size:23
Alignment explanation
Indices: 3435--3492 Score: 79
Period size: 21 Copynumber: 2.7 Consensus size: 23
3425 CTATCCTTTA
3435 TTTATTTCATTTCATTCCTTATC
1 TTTATTTCATTTCATTCCTTATC
*
3458 TTTA--TCATTTCATTCCTTTTC
1 TTTATTTCATTTCATTCCTTATC
3479 TTTA--TCATTTCATT
1 TTTATTTCATTTCATT
3493 AATCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 30 0.88
23 4 0.12
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTATTTCATTTCATTCCTTATC
Found at i:6807 original size:14 final size:14
Alignment explanation
Indices: 6788--6839 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
6778 AAGTTAATTG
6788 GTTGACTCAAATGA
1 GTTGACTCAAATGA
**
6802 GTTGACTCAGTTCGA
1 GTTGACTCAAAT-GA
* *
6817 TTTGACTCAAGTGA
1 GTTGACTCAAATGA
6831 GTTGACTCA
1 GTTGACTCA
6840 GTTCAAACTG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
14 20 0.65
15 11 0.35
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (14 bp):
GTTGACTCAAATGA
Found at i:9138 original size:305 final size:305
Alignment explanation
Indices: 8587--9198 Score: 1170
Period size: 305 Copynumber: 2.0 Consensus size: 305
8577 CATTGTTATA
8587 ATAGATATGTATAATTGTTTAGGTTTATATTGTCTTAAAATAGTTCAGATCTAAAATTTTTAGTT
1 ATAGATATGTATAATTGTTTAGGTTTATATTGTCTTAAAATAGTTCAGATCTAAAATTTTTAGTT
8652 TTCTAAATCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTGCAATAGA
66 TTCTAAATCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTGCAATAGA
*
8717 TATGCGTTGTCAAAAGGGCAATTGCCAATAATTTGTTTATCTTTTATATTTCTCTGGTGCGATAG
131 TATGCGTTGTCAAAAGGGCAATTGCCAATAAATTGTTTATCTTTTATATTTCTCTGGTGCGATAG
8782 TAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCCATTTTATTTCATGTGTGTAACGG
196 TAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCCATTTTATTTCATGTGTGTAACGG
8847 TTACATGTTGCAAAGCTTAGCATATTTTAAGTTTCCAATTTTTTC
261 TTACATGTTGCAAAGCTTAGCATATTTTAAGTTTCCAATTTTTTC
8892 ATAGATATGTATAATTGTTTAGGTTTATATTGTCTTAAAATAGTTCAGATCTAAAATTTTTAGTT
1 ATAGATATGTATAATTGTTTAGGTTTATATTGTCTTAAAATAGTTCAGATCTAAAATTTTTAGTT
*
8957 TTCTAAATCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTGTCTAATATTTTATTGCAATAGA
66 TTCTAAATCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTGCAATAGA
* * *
9022 TATGTGTTGTCAAAAGGGTAATTGCCAATAAATTGTTTATCTTTTATATTTCTCTGGTGTGATAG
131 TATGCGTTGTCAAAAGGGCAATTGCCAATAAATTGTTTATCTTTTATATTTCTCTGGTGCGATAG
*
9087 TAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCCATTTTATTTCCTGTGTGTAACGG
196 TAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCCATTTTATTTCATGTGTGTAACGG
9152 TTACATGTTGCAAAGCTTAGCATATTTTAAGTTTCCAATTTTTTC
261 TTACATGTTGCAAAGCTTAGCATATTTTAAGTTTCCAATTTTTTC
9197 AT
1 AT
9199 GGAAAATTAG
Statistics
Matches: 301, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
305 301 1.00
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.44
Consensus pattern (305 bp):
ATAGATATGTATAATTGTTTAGGTTTATATTGTCTTAAAATAGTTCAGATCTAAAATTTTTAGTT
TTCTAAATCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTGCAATAGA
TATGCGTTGTCAAAAGGGCAATTGCCAATAAATTGTTTATCTTTTATATTTCTCTGGTGCGATAG
TAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCCATTTTATTTCATGTGTGTAACGG
TTACATGTTGCAAAGCTTAGCATATTTTAAGTTTCCAATTTTTTC
Found at i:10984 original size:883 final size:882
Alignment explanation
Indices: 9625--12959 Score: 2948
Period size: 952 Copynumber: 3.6 Consensus size: 882
9615 CATAGAGAAA
* * * * * *
9625 TATGAATAAATATTTATGATACGTTTAAAATCGAGTTTT-TAATTGTTAGTTGTCTTAGCTCAGC
1 TATGGATAAATATTTACGATACGTGTAAAATC-AATTTTATAATTGTTAGCTATCTTAGCTCAGC
* * * * ** *
9689 TAGTATAGCGCATGGCTTTTAACCATGTGGTCGT-GGATTCGATTTTCACAGACTACAAAGGTTG
65 TGGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGA-TCAATTCCCACAGACGACAAAGGTTG
* * *
9753 AAGGTGTAACCATTGTTATAATAGATATGTATGATTGTTTAGGTTTATATTGTCTTAAAATAGTT
129 AAGGTGTATCCATTGTTATAATAGATATGCATGATTGTTTAGGTTTATATTGACTTAAAATAGTT
** * * * * * * *
9818 AAGATGTAAAAAATTTATTTTTGTAATCCTTGTTGGTAATGTGCATGAAATTTAAACTTATTGTC
194 AAGATGTAAAATGTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTGCC
* ** * * * * ** * *
9883 TAAGATTCTATTCCAATAGATATGTGTTTTCAAAAGGGGAATTTTTTATAATTTGTTTATATTTT
259 TAAGATTTTATTCCAATAGATATGCCTTGTCGAAAGGGAAATTGTCGATAAGTTGTTTATCTTTT
* * * * * * * * * *
9948 ATATTTATCTGGTTCGATAGGAAGGGGTTCATACTGTTACTTTTGTTAACCAGTATAATTTCATT
324 ATATCTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACCTGTACAATTCCATT
* * * * * * *
10013 TTATTTACTGTGTGTAACGGTTACGTGCTGAAAAGCATATCATCTTTTAAGTGTTCCAAGTTTTT
389 TTATTTCCTGTATGTAACAGTTACATGCTGAAAAGCTTAACATCTTTTAAGTTTTCC-AGTTTTT
* * * *
10078 TCGTGTAAAACTAGGTTTATTTATTCATTGTTTTTCAAGTTAAAACTGTTGTTGAGATGTGCCTT
453 TCGTGGAAAATTAGGTTTATTTATTTATTGTTTTTCAAGTTAAAATTGTTGTTGAGATGTGCCTT
*
10143 TAAAAATATTATTTTCTAACAAATTGTTATGCTACTTTAAATAGTTTGACATTGTTTACAAAGTA
518 TAAAAATATTATTTTCTAACAAATTGTTATGTTACTTTAAATAGTTTGACATTGTTTACAAAGTA
10208 TATTATGAAAAATATAAATTTAAAAAATAGAATTGAGAGAAAATAAGTTACCTTAAATTATTTTT
583 TATTATGAAAAATATAAATTTAAAAAATAGAATTGAGAGAAAATAAGTTACCTTAAATTATTTTT
*
10273 CTGAGTATATATGTGTGTGTGTGTCATAAAGTAAGAGGATTGAATACGAATATAATTCTTTTAAC
648 CTGAGTATATATGTGTGTGTGTGTCATAAAGTAAGAGGATTGAATACGAATATAATTCTTTAAAC
* *
10338 ATTTAC-AAAATAATTTTCGGGTGGTATTTTTTATTCCAAAAGTTATCTGTTAACCTTGTTCTTT
713 ATTTACTAAAATAATTTTTGGGAGGTATTTTTTATTCCAAAAGTTATCTGTTAACCTTGTTCTTT
* * ** * *
10402 ACTTCATTTAATTCCAAATGTACAATTAGCCTTAAT-TAAAAAAAAATAAAAAATATTAGTTTTC
778 ACTTCATTTAATCCCAAATGTACAATTAGCTTTAATCTTGAAAAACATAAAAAATATTAGTTTAC
*
10466 TTGTATCTCATTTTCTAAATTATACTTTATAAAATATAAT
843 TTGTATCTCATTTTCTAAATTATACTTTATAAATTATAAT
* * * *
10506 TATGGATAAATATTTATGATACATGTAAAATCAATTTTATAAATGTTAGCTATCTTAGCACAGCT
1 TATGGATAAATATTTACGATACGTGTAAAATCAATTTTATAATTGTTAGCTATCTTAGCTCAGCT
* * * ** *
10571 GGTAGAGCGCATGACTTTTAACCATGTGGTTATGGGATCAATTCCCACAGACGGCGGAGGCTGAA
66 GGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGATCAATTCCCACAGACGACAAAGGTTGAA
*
10636 GGTGTATCCATTGTTATAATAGATATGCATGATTATTTAGGTTTATATTGACTTAAAATATAGTT
131 GGTGTATCCATTGTTATAATAGATATGCATGATTGTTTAGGTTTATATTGACTT-AAA-ATAGTT
* *
10701 AAGATGTAAAATGTTTAGTTTTCTAAGCCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTCCC
194 AAGATGTAAAATGTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTGCC
10766 TAAGATTTTATTCCAATAGATATGCCTTGTCGAAAGGGAAATTGTCGATAAGTTGTTTATCTTTT
259 TAAGATTTTATTCCAATAGATATGCCTTGTCGAAAGGGAAATTGTCGATAAGTTGTTTATCTTTT
* * * * *
10831 ATATCTCTTTAGTGCGATAGTTAGTGGTTCATAGTGTTGCTTCTGTTAACCTGTACCATTCCATT
324 ATATCTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACCTGTACAATTCCATT
* * *
10896 TTATTTCCTCTATGTAATAGTTACATGCTAAAAAGCTTAACATCTTTTAAGTTTTTCCAGTTTTT
389 TTATTTCCTGTATGTAACAGTTACATGCTGAAAAGCTTAACATCTTTTAAG-TTTTCCAGTTTTT
*
10961 TCGTGGAAAATTAGGTTTATTTATTGT-TTGTTTTTCAAGTTAAAATTGTTGTCGAGATGTGCCT
453 TCGTGGAAAATTAGGTTTATTTATT-TATTGTTTTTCAAGTTAAAATTGTTGTTGAGATGTGCC-
*
11025 TTAATCCAAAGAAATAGTTTTAGAAAGAGTTTTAAAAATATTTCTTTCTAACAAATTGTTATATT
516 TT--T----A-AAA-A----T------A----T-----TA--T-TTTCTAACAAATTGTTATGTT
* * *
11090 ACATTAAATCA-CTTGATATTGTTTACAAAGTATATTATG-AAAATATAAATTTAGAAAAA-AGA
551 ACTTTAAAT-AGTTTGACATTGTTTACAAAGTATATTATGAAAAATATAAATTTA-AAAAATAGA
* * *
11152 ATTGATGTTGGAAAGTGCGAAAATATGTTACCTTAAATTATTTTCCTAAGTATATACATATATAT
614 ATTGA-----G--A----GAAAATAAGTTACCTTAAATTATTTTTCT--G-------A-GTATAT
* * * * *
11217 ATGCATGCATGTATGTATGTATGT-ATGTATGTATGTATGTATT-ATATATGTATATCATAAAGT
658 ATG--TG--TG--TG--TG--TGTCAT-AAAGTAAG-A-GGATTGA-ATACG-A-AT-AT-AA-T
* *
11280 AAGAGTCTAAAATACCAAAACAATTCTTTCAACATTTCTAAAAGAATTTTTGGGAGGTA-TTTTT
704 -----TCT----T---TAAAC-A---TTT----A---CTAAAATAATTTTTGGGAGGTATTTTTT
* * * *
11344 ATTGCAAAATTTATC-GATTACCCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTATCTT
746 ATTCCAAAAGTTATCTG-TTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTT
* *
11408 TAATTTTTTGTGTGAAAAACATAGAGAAATATTAGTTTACTTGTATCTCATTTTCTAAATTATGA
810 TAA-----TCT-TGAAAAACATA-AAAAATATTAGTTTACTTGTATCTCATTTTCTAAATTAT-A
* *
11473 -TTTATAGATTATAAA
867 CTTTATAAATTATAAT
* * * ** * * *
11488 TATGGATAAATATTTACGATATGTATAAAATCAAGTTTATAATTGTTATTTGTTTTAGCTCAGTT
1 TATGGATAAATATTTACGATACGTGTAAAATCAATTTTATAATTGTTAGCTATCTTAGCTCAGCT
** ** * * *
11553 GGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGTTTTGATTCCTACATACGACAAAGATTGAA
66 GGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGATCAATTCCCACAGACGACAAAGGTTGAA
* * ** * *
11618 GGTGTATCCATTGTTATAATAGATATGTATGATTGTTTAGGTTTATGTTTTCTTAAAAAAATTAA
131 GGTGTATCCATTGTTATAATAGATATGCATGATTGTTTAGGTTTATATTGACTTAAAATAGTTAA
** * * ** * *
11683 GATGTAATTTTTTTATTTTTCTAAATGTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTGTCTA
196 GATGTAAAATGTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTGCCTA
* * * * * * *
11748 AGCTTTTATTCCAATAGATATGCGTTGTCGAAAGGGCAATCGCCGATATGTTGTTTATCTTCTAT
261 AGATTTTATTCCAATAGATATGCCTTGTCGAAAGGGAAATTGTCGATAAGTTGTTTATCTTTTAT
* * * * *
11813 ATTTCTCTAGTGCGATAGTAAGGGGTTCATAGTCTTTCTTTTGTTAACCTCTACAATTCCATTTT
326 ATCTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACCTGTACAATTCCATTTT
* * * * * * * *
11878 TTTTCTTGTGTGGAACGGTTACATGCTGAAAAGATTAACATCTTTTAAGTATTCCATGCTTTTTC
391 ATTTCCTGTATGTAACAGTTACATGCTGAAAAGCTTAACATCTTTTAAGTTTTCCA-GTTTTTTC
* *
11943 ATGGAAAATTAGGTTTATTTATTTATTGTTTTTCAAGTTAAGAGTTTTGTTGAGATGTACTTTAA
455 GTGGAAAATTAGGTTTATTTATTTATTGTTTTTCAAGTT-A-A---------A-AT-T--GTT--
* * * *
12008 AAGAAACATTGCGAAAGAAATAGTTTTAAAAAGAGCTTTAAAAATATTATTTTTTCTA-ACAAAT
503 --G-----TT--G--AG--AT-G---T-----G-CCTTTAAAAATATTATTTTCT-AACA-AAT-
* *
12072 TGTTATGTTATTTTAAATAGTTTGGCATTGTTTACAAAGTATATTATGACAAATATATAAATTTA
542 TGTTATGTTACTTTAAATAGTTTGACATTGTTTACAAAGTATATTATGA-AAA-ATATAAATTTA
* *
12137 GAAAATAGGATTGAGAGAAAATAAGTTACCTTAAATTATTTTTCTGAGTATATATATATATATAT
605 AAAAATAGAATTGAGAGAAAATAAGTTACCTTAAATTATTTTTCTGAG-----------------
* * * * * * * * * * *
12202 ATATATATATATATATGTATATATCATAAAATAAGAGGATAG-ATACGAAAACAATTCTTTCAAT
653 -----TATATATGTGTGTGTGTGTCATAAAGTAAGAGGATTGAATACGAATATAATTCTTTAAAC
*
12266 ATTT-CTAAAATAATTTTTGGGAGGTATTTTTCATTCCAAAAGTTATCTGTTAACCTTGTTCTTT
713 ATTTACTAAAATAATTTTTGGGAGGTATTTTTTATTCCAAAAGTTATCTGTTAACCTTGTTCTTT
* *
12330 ACTTCATTTAATCCCAAATGTACAATTAGCTTTAGTTTTTCTTGAAAAACATAAAGAAAAATTAG
778 ACTTCATTTAATCCCAAATGTACAATTAGCTTTA----ATCTTGAAAAACATAAA-AAATATTAG
12395 TTTACTTGTATCTCATTTTCTAAATTATACTTTATAAATTATAAT
838 TTTACTTGTATCTCATTTTCTAAATTATACTTTATAAATTATAAT
* * * * *
12440 TATGGAGAAATATTTACAATATGTGTAAAATCAATTTTATAATTGTTAGCTATCTTAGCTTAGTT
1 TATGGATAAATATTTACGATACGTGTAAAATCAATTTTATAATTGTTAGCTATCTTAGCTCAGCT
* * * *
12505 GGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGTTCAATTTCCACAGACGGCAGAGGTTGAA
66 GGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGATCAATTCCCACAGACGACAAAGGTTGAA
* ** ** *
12570 GCTGTATATATTGTTATAATAGATAAACATGATTCTTTAGGTTTATATTGACTTAAAATAGTTAA
131 GGTGTATCCATTGTTATAATAGATATGCATGATTGTTTAGGTTTATATTGACTTAAAATAGTTAA
12635 GATGTAAAATGTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTGCCTA
196 GATGTAAAATGTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTGCCTA
*
12700 AGATTTTATTCCAATAGATATGCCTTGTTGAAAGGGAAATTAG-CGATAAGTTGTTTATCTTTTA
261 AGATTTTATTCCAATAGATATGCCTTGTCGAAAGGGAAATT-GTCGATAAGTTGTTTATCTTTTA
* * * *
12764 TAACTCTTTAGTGCGATA-T-AGGGGTTCATAGTGTTCCATCTGTTAACCTGTACAATTCCA-TT
325 TATCTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACCTGTACAATTCCATTT
* * * * *
12826 TATTTCATGTATGTAACAATTACATGATGAAAAGCTTAACATCTTTTAAGTGTTCCCTGTTTTTT
390 TATTTCCTGTATGTAACAGTTACATGCTGAAAAGCTTAACATCTTTTAAGT-TTTCCAGTTTTTT
*
12891 CGTGGAAAATTAGGTTTATTTATTTATTGTTTTTCAAGTGAAAATTGTTGTTGAGATGTGCCTTT
454 CGTGGAAAATTAGGTTTATTTATTTATTGTTTTTCAAGTTAAAATTGTTGTTGAGATGTGCCTTT
12956 AAAA
519 AAAA
12960 GAAGTACTTC
Statistics
Matches: 1964, Mismatches: 293, Indels: 366
0.75 0.11 0.14
Matches are distributed among these distances:
880 5 0.00
881 149 0.08
882 6 0.00
883 271 0.14
884 7 0.00
886 1 0.00
890 1 0.00
891 3 0.00
892 1 0.00
896 1 0.00
902 1 0.00
906 1 0.00
909 8 0.00
910 1 0.00
911 2 0.00
913 23 0.01
914 58 0.03
915 2 0.00
918 2 0.00
919 2 0.00
920 1 0.00
921 2 0.00
923 1 0.00
924 27 0.01
925 2 0.00
926 1 0.00
930 1 0.00
933 1 0.00
934 10 0.01
936 3 0.00
937 2 0.00
938 3 0.00
940 2 0.00
942 2 0.00
943 2 0.00
944 8 0.00
945 2 0.00
946 8 0.00
947 2 0.00
948 3 0.00
949 91 0.05
950 41 0.02
951 4 0.00
952 352 0.18
953 24 0.01
954 64 0.03
955 1 0.00
956 3 0.00
960 1 0.00
961 3 0.00
963 3 0.00
964 2 0.00
965 2 0.00
967 3 0.00
968 1 0.00
971 1 0.00
972 3 0.00
973 1 0.00
974 66 0.03
975 17 0.01
977 1 0.00
978 2 0.00
979 9 0.00
980 260 0.13
981 14 0.01
982 208 0.11
983 31 0.02
984 1 0.00
985 6 0.00
986 2 0.00
987 2 0.00
989 7 0.00
990 5 0.00
991 43 0.02
992 4 0.00
993 9 0.00
994 18 0.01
995 9 0.00
997 1 0.00
999 1 0.00
1001 1 0.00
1004 1 0.00
1006 1 0.00
1007 1 0.00
1008 2 0.00
1010 2 0.00
1011 2 0.00
1012 3 0.00
1013 1 0.00
1014 1 0.00
1017 1 0.00
1019 3 0.00
1020 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (882 bp):
TATGGATAAATATTTACGATACGTGTAAAATCAATTTTATAATTGTTAGCTATCTTAGCTCAGCT
GGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGATCAATTCCCACAGACGACAAAGGTTGAA
GGTGTATCCATTGTTATAATAGATATGCATGATTGTTTAGGTTTATATTGACTTAAAATAGTTAA
GATGTAAAATGTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACTTGTTGCCTA
AGATTTTATTCCAATAGATATGCCTTGTCGAAAGGGAAATTGTCGATAAGTTGTTTATCTTTTAT
ATCTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACCTGTACAATTCCATTTT
ATTTCCTGTATGTAACAGTTACATGCTGAAAAGCTTAACATCTTTTAAGTTTTCCAGTTTTTTCG
TGGAAAATTAGGTTTATTTATTTATTGTTTTTCAAGTTAAAATTGTTGTTGAGATGTGCCTTTAA
AAATATTATTTTCTAACAAATTGTTATGTTACTTTAAATAGTTTGACATTGTTTACAAAGTATAT
TATGAAAAATATAAATTTAAAAAATAGAATTGAGAGAAAATAAGTTACCTTAAATTATTTTTCTG
AGTATATATGTGTGTGTGTGTCATAAAGTAAGAGGATTGAATACGAATATAATTCTTTAAACATT
TACTAAAATAATTTTTGGGAGGTATTTTTTATTCCAAAAGTTATCTGTTAACCTTGTTCTTTACT
TCATTTAATCCCAAATGTACAATTAGCTTTAATCTTGAAAAACATAAAAAATATTAGTTTACTTG
TATCTCATTTTCTAAATTATACTTTATAAATTATAAT
Found at i:11232 original size:4 final size:4
Alignment explanation
Indices: 11225--11269 Score: 74
Period size: 4 Copynumber: 11.5 Consensus size: 4
11215 ATATGCATGC
*
11225 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-T ATAT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
11270 ATCATAAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
3 3 0.08
4 36 0.92
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (4 bp):
ATGT
Found at i:12192 original size:2 final size:2
Alignment explanation
Indices: 12185--12225 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
12175 TTTTTCTGAG
*
12185 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12226 CATAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13154 original size:4 final size:4
Alignment explanation
Indices: 13140--13324 Score: 361
Period size: 4 Copynumber: 46.2 Consensus size: 4
13130 TTTTTATGAG
*
13140 TACA CACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
13188 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
13236 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
13284 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
13325 CTATGTATGT
Statistics
Matches: 179, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
4 179 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:13341 original size:10 final size:10
Alignment explanation
Indices: 13326--13416 Score: 87
Period size: 10 Copynumber: 9.3 Consensus size: 10
13316 TACATACATC
*
13326 TATGTATGTA
1 TATGTATATA
*
13336 TATG--TATG
1 TATGTATATA
*
13344 TATGTATGTA
1 TATGTATATA
*
13354 TATGTATATG
1 TATGTATATA
*
13364 TGTGTATATA
1 TATGTATATA
*
13374 TATATATATA
1 TATGTATATA
*
13384 TATATATATA
1 TATGTATATA
*
13394 TATATATATA
1 TATGTATATA
*
13404 TATATATATA
1 TATGTATATA
13414 TAT
1 TAT
13417 ATATCAAAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
8 6 0.09
10 63 0.91
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (10 bp):
TATGTATATA
Found at i:13349 original size:18 final size:16
Alignment explanation
Indices: 13326--13420 Score: 82
Period size: 16 Copynumber: 5.8 Consensus size: 16
13316 TACATACATC
13326 TATGTATGTATATGTA
1 TATGTATGTATATGTA
13342 TGTATGTATGTATATGTA
1 --TATGTATGTATATGTA
* *
13360 TATGTGTGTATATATA
1 TATGTATGTATATGTA
* * *
13376 TATATATATATATATA
1 TATGTATGTATATGTA
* * *
13392 TATATATATATATATA
1 TATGTATGTATATGTA
* *
13408 TATATATATATAT
1 TATGTATGTATAT
13421 CAAAAGTAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
16 56 0.78
18 16 0.22
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.51
Consensus pattern (16 bp):
TATGTATGTATATGTA
Found at i:13373 original size:2 final size:2
Alignment explanation
Indices: 13368--13420 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
13358 TATATGTGTG
13368 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13410 TA TA TA TA TA T
1 TA TA TA TA TA T
13421 CAAAAGTAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13942 original size:260 final size:260
Alignment explanation
Indices: 13456--13970 Score: 951
Period size: 260 Copynumber: 2.0 Consensus size: 260
13446 AACAATTTTT
13456 TAAACATTTCTAAAAGAATTTTTGGAAGGTATTTTTATTCCAAAAGTTATCGGTTAACCTTGTTC
1 TAAACATTTCTAAAAGAATTTTTGGAAGGTATTTTTATTCCAAAAGTTATCGGTTAACCTTGTTC
* *
13521 TTTTCTTCATTTAATCCCAAATGTACAATTAGCTTTAATTTTTGTGTGTGAAAATCATAGAGAAA
66 TTTACTTCATTTAATCCCAAATGTACAATTAGCTTTAATTTTTGTGTGTAAAAATCATAGAGAAA
* *
13586 TATTAGTTTACAAGTATCTCATTTTCTAAATTATGCTTTATAGATTTTAAATATGGATAAATATT
131 TAATAGTTTACAAGTATCTCATTTTCTAAATTATGCTTAATAGATTTTAAATATGGATAAATATT
*
13651 TACGATACATATAAAATCAAGTTTAAATTGTTATTTGTCTTAGCTCATTTGGTAGAGCGCATGGA
196 TACGATACATATAAAATCAAGTTTAAATTGTTATTTGTCTTAGCTCAGTTGGTAGAGCGCATGGA
*
13716 TAAACATTTCTAAAAGAATTTTTGGAAGGTATTTTTATTCCTAAAGTTATCGGTTAACCTTGTTC
1 TAAACATTTCTAAAAGAATTTTTGGAAGGTATTTTTATTCCAAAAGTTATCGGTTAACCTTGTTC
13781 TTTACTTCATTTAATCCCAAATGTACAATTAGCTTTAATTTTT-TGTGTAAAAATCATAGAGAAA
66 TTTACTTCATTTAATCCCAAATGTACAATTAGCTTTAATTTTTGTGTGTAAAAATCATAGAGAAA
13845 TAATAGTTTACAAGTATCTCATTTTCTAAATTATGCTTAATAGATTTTAAATATGGATAAATATT
131 TAATAGTTTACAAGTATCTCATTTTCTAAATTATGCTTAATAGATTTTAAATATGGATAAATATT
*
13910 TACGATACGTATAAAATCAAGTTTATAATTGTTATTTGTCTTAGCTCAGTTGGTAGAGCGC
196 TACGATACATATAAAATCAAGTTTA-AATTGTTATTTGTCTTAGCTCAGTTGGTAGAGCGC
13971 GTGGCTTTTA
Statistics
Matches: 247, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
259 107 0.43
260 140 0.57
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (260 bp):
TAAACATTTCTAAAAGAATTTTTGGAAGGTATTTTTATTCCAAAAGTTATCGGTTAACCTTGTTC
TTTACTTCATTTAATCCCAAATGTACAATTAGCTTTAATTTTTGTGTGTAAAAATCATAGAGAAA
TAATAGTTTACAAGTATCTCATTTTCTAAATTATGCTTAATAGATTTTAAATATGGATAAATATT
TACGATACATATAAAATCAAGTTTAAATTGTTATTTGTCTTAGCTCAGTTGGTAGAGCGCATGGA
Found at i:14605 original size:6 final size:6
Alignment explanation
Indices: 14581--16256 Score: 2676
Period size: 6 Copynumber: 281.5 Consensus size: 6
14571 AGTGAGAAAA
* * * * *
14581 TATATG TATGTATG TATATG CATATG CATATG TATACG CATATG TATACG
1 TATATG TA--TATG TATATG TATATG TATATG TATATG TATATG TATATG
* * * * * * * *
14631 CATATG TATACG CATATG TATACG CATATG TATACG CATATG CATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
*
14679 CATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
14727 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
14775 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
14823 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
14871 TATATG TATATG TATATG --TATG TATATG TATA-G TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
14916 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
14964 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15012 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15060 TATATG TATATG TATATG TATGTATG TATATG TATATATG TATATG TATATG
1 TATATG TATATG TATATG TA--TATG TATATG --TATATG TATATG TATATG
15112 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15160 TATATG TATATG TATATG TATATG TATATG --TATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15206 TATATG --TATG TATATG --TATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* * *
15250 CATATG CATATG TATATG CATATG TATATG TATGTATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TA--TATG TATATG TATATG
* * * * * *
15300 TATATG GATATG GATATG GATATG TATATG GATATG GATATG GATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15348 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* * * *
15396 TATATG TATATG CATATG CATATG CATATG CATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15444 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* * * *
15492 TATATG TATATG GATATG GATATG GATATG GATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15540 TATATG TATATG TATATG TATATG --TATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15586 TATATG TATATG TATATG TATATG TATATG --TATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* * * * * * * *
15632 CATATG CATATG TATATG CATATG CA-AGCG CATATG CATATG CATATG
1 TATATG TATATG TATATG TATATG TATA-TG TATATG TATATG TATATG
* *
15680 CATATG CATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* * * * *
15728 TATATG TATATG CATATG CATATG CATATG CATATG CATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* *
15776 TATATG TATATG TATATG TATATG TATATG TATATG CATATG CATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
*
15824 CATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15872 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15920 TATATG --TATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15966 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16014 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16062 TATATG TATATG TATATG TATATG --TATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16108 TATATG TATATG TATATG --TATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16154 TATATG --TATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16200 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
16248 TATATG TAT
1 TATATG TAT
16257 CTAAAGGAAA
Statistics
Matches: 1595, Mismatches: 44, Indels: 62
0.94 0.03 0.04
Matches are distributed among these distances:
4 40 0.03
5 6 0.00
6 1524 0.96
7 1 0.00
8 24 0.02
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (6 bp):
TATATG
Found at i:22359 original size:2 final size:2
Alignment explanation
Indices: 22352--22429 Score: 147
Period size: 2 Copynumber: 38.5 Consensus size: 2
22342 CGCGGTACGG
22352 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22394 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
22430 GTTTTTGTTG
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 73 0.97
3 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
TA
Found at i:28559 original size:15 final size:15
Alignment explanation
Indices: 28539--28568 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
28529 TTCTTCAGCC
28539 ATTTTTCTCAAAACT
1 ATTTTTCTCAAAACT
28554 ATTTTTCTCAAAACT
1 ATTTTTCTCAAAACT
28569 GAGGTAAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTTTCTCAAAACT
Found at i:31918 original size:16 final size:16
Alignment explanation
Indices: 31897--31934 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
31887 TCATACTTAC
31897 ATATATTTATATATAT
1 ATATATTTATATATAT
* *
31913 ATATATTTGTTTATAT
1 ATATATTTATATATAT
31929 ATATAT
1 ATATAT
31935 ATACTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
ATATATTTATATATAT
Found at i:34045 original size:21 final size:18
Alignment explanation
Indices: 34008--34079 Score: 81
Period size: 18 Copynumber: 3.7 Consensus size: 18
33998 TACTAAAATG
34008 GTATCGATACTATATACA
1 GTATCGATACTATATACA
34026 GTATCGATACTACTTAATACAACA
1 GTATCGATACTA--T-AT---ACA
*
34050 ATATCGATACTATATACA
1 GTATCGATACTATATACA
34068 GTATCGATACTA
1 GTATCGATACTA
34080 CTTAGTACAG
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
18 26 0.57
20 1 0.02
21 4 0.09
22 1 0.02
24 14 0.30
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (18 bp):
GTATCGATACTATATACA
Found at i:34081 original size:21 final size:22
Alignment explanation
Indices: 34015--34091 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 22
34005 ATGGTATCGA
34015 TACTATA-TACAGTATCGATAC
1 TACTATACTACAGTATCGATAC
* *
34036 TACTTAATACAACAATATCG--A-
1 TAC-T-ATACTACAGTATCGATAC
34057 TACTATA-TACAGTATCGATAC
1 TACTATACTACAGTATCGATAC
*
34078 TACT-TAGTACAGTA
1 TACTATACTACAGTA
34092 GTACTGATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
18 8 0.18
19 3 0.07
20 4 0.09
21 17 0.38
22 2 0.04
23 3 0.07
24 8 0.18
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (22 bp):
TACTATACTACAGTATCGATAC
Found at i:34102 original size:42 final size:42
Alignment explanation
Indices: 34009--34088 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
33999 ACTAAAATGG
34009 TATCGATACTATATACAGTATCGATACTACTTAATACAACAA
1 TATCGATACTATATACAGTATCGATACTACTTAATACAACAA
*
34051 TATCGATACTATATACAGTATCGATACTACTTAGTACA
1 TATCGATACTATATACAGTATCGATACTACTTAATACA
34089 GTAGTACTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (42 bp):
TATCGATACTATATACAGTATCGATACTACTTAATACAACAA
Found at i:37819 original size:928 final size:921
Alignment explanation
Indices: 34927--37866 Score: 3410
Period size: 928 Copynumber: 3.1 Consensus size: 921
34917 TTGACTCAAC
* * * * * *
34927 ATATTTTTTCTAAAAAATTGTTATGTTACTTTAAATCGTTTAATACTGTTTAC-----A-A--AT
1 ATATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTGATATTTTTTACAAAGTATATTAT
* * *
34984 GAAATATATAAATTTAGAAAATATAATTGATGTAAGAAAGTGA-AAAA-AAGTTACCTTAAATTA
66 GAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTA
* * * *
35047 TTTTTCTAAGTATATATATATATATATCATAAAGTAAGATGTTAAAATACGAAAACAATTCTTTC
131 TTTTT-T---T-GA-GTATATATATATCATAAAGTAAGAGGCTAAAATACGAAAACAATTCTTTC
* * *
35112 AACAATTCTAAAAGAATTTTTTGGAGTTATTTTTTATTCCAAAAGTTATTCGTTAACCTTGTTCT
190 AACATTTCTAAAAGAA-TTTTTGGAGGTATTTTTTATTCCAAAAGTTATCCGTTAACCTTGTTCT
* * * **
35177 TTACTTCATTTAATCACAAATGTACAATTAGATTCAATTTTTTTTATCTTGAAAACATAGAGAAA
254 TTACTTCATTTAATCCCAAATGTACAATTAGCTTCAA-ATTTTTTA--TAAAAAACATAGAGAAA
*
35242 TATTAGTTTACTTGTATCTCATTTTCTAAATTATACTTTA-AAGATTATAAATATGGATAAATAT
316 TATTAGTTTACTTGTATCTCATTTTCTAAATTATGCTTTATAA-ATTATAAATATGGATAAATAT
* * ** * * * *
35306 TTATGATACATGTAAAATAAAGTTTATGGTGTTTTAGCTC--AG-T--TGGTAGAGAGCATAACG
380 TTACGATACATGTAAAATCAAGTTTATAAT-TGTTAACTCTTAGTTACTGGTAGAGAGCATGACA
* * **
35366 TTTAAGCATGTGGTTGTGGGTTCGATTCCTACAT-ATTGCAGAGGTTGAAGGTGTATCCATTGTT
444 TTTAACCATGTGGTCGTGGGTTCGATTCC-A-ATGACAGCAGAGGTTGAAGGTGTATCCATTGTT
* * * * *
35430 ATAATAGATATGTGTGGTTGTTTATGTTTATATTGCATGTCTTAAAATAGGTTAAGATATAAAAT
507 ATAATAGATATGTATGATTGTTTAGGTTTATA---C-TGTCTTAAAATA-GTTAAGATGTAAATT
* * * *
35495 TTTTAGTTTTCTAAACCATGTTGGTAGTGTGCGT-GCTCTTTAAACTTGTTACCTAAGATTTTAT
567 TTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGGC-ATTTAAACTTGTTATCTAAGATTTTAT
* * * * * *
35559 TACAATAGATATGCGTTGTCGAAAGTGCAATTGCCGATAAATTGTTTATCTTTTATATTTCTCTA
631 TTCAATAGATATGCGTTGTCAAAAGGGCAATTGTCGATAAGTTGTTTATCTTCTATATTTCTCTA
*
35624 GTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTATTAACCTGTACAATTCCATTTTATTTCCTCT
696 GTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTATTAACCTGTACAATTCCATTTTATTT-CTTT
* * * * * *
35689 GTGTAATTGTTGCATGCTGAAAAGCTTAGCATCTTTTAAGTGTTCCAAATTCTTCTTGGAAAATT
760 GTGAAATGGTTGCATGCTGAAAAGATTAGCTTCTTTTAAGTGTTCC-AATTTTTTTTGGAAAATT
* * * * *
35754 AGGTTTACTTATTCATTGTTTTTCAAG-TAAAACGTGTTGTTGACATGGGCCTTTAAAAAAAGCG
824 AGGTTTATTTATTCATTGTTTTTTAAGTTAAAA-GTGTTGTTGAGATGTGCCTTTAAAAGAAGCG
* *
35818 CTTCAAGAGAAGTAGTTTAAGAAAGAGCTTTAAAA
888 CTTCAAAAGAAGTAGTTTTAGAAAGAGC-TTAAAA
* * * * *
35853 TTATTTTTTCTAACAAATTGTTAGGTTAC-TTATATCGTTTGATATTTTTTACAAAGTATATTAT
1 ATATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTGATATTTTTTACAAAGTATATTAT
* * * * * *
35917 GAAAATTATAAATTTAGAAAATAAAATGGATGTTAGAAAGCGAGAAAATACGGTACCTTAAATTA
66 GAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTA
*
35982 TTTTTTTGAGCACACACACAAATATATAGATGTATATGTACACATATCATAAAGGAAGAGGCTAA
131 TTTTTTTGAG----------------T--A--TATA--T----ATATCATAAAGTAAGAGGCTAA
* * * *
36047 AATATGAAAACAATTCTTTCAACTTTTCTAAAAGAATTTTAGGAGGTATTTTATATTCCAAAAGT
170 AATACGAAAACAATTCTTTCAACATTTCTAAAAGAATTTTTGGAGGTATTTTTTATTCCAAAAGT
*
36112 TATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTCAAATTTTTTAT
235 TATCCGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTCAAATTTTTTAT
* * * *
36177 GAAAAACATAGAGAAATATTAGTTTACTTGTATCTCATTTTATAAATTTTGCATTATAAATTATA
300 AAAAAACATAGAGAAATATTAGTTTACTTGTATCTCATTTTCTAAATTATGCTTTATAAATTATA
* * * *
36242 AATATGGATAAATATTTACGATACGTGTAAAATCAAGTTTATAATTGTTAGATGTCTTACATCAG
365 AATATGGATAAATATTTACGATACATGTAAAATCAAGTTTATAATTGTTA-A-CTCTTA-GTTA-
* * * * * **
36307 CTAGTAGAGTGCATGGCTTTTAACCATGTGGTCGTGGGTTTGATTCCCACA-GACAGTGGAGGTT
426 CTGGTAGAGAGCATGACATTTAACCATGTGGTCGTGGGTTCGATT-CCA-ATGACAGCAGAGGTT
* * * * * * *
36371 GAAGGTGTATTCATTGTTATAAAAGATTTGTATGATTGTTTAGATTTATATTATCTTAAAATAGG
489 GAAGGTGTATCCATTGTTATAATAGATATGTATGATTGTTTAGGTTTATACTGTCTTAAAATAGT
* * *
36436 TAAGATGTAAATTTTTTTAGTTTTCTAAACCTTATTGGTAGTGTGCATGACATTTAAACTTGTTC
554 TAAGATGTAAA-TTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTA
* * * * * *
36501 TCTAAGATTTTA-TTCCATAG--ATGAGTTGTTAAAAGGGTAATTGTTGATAAGTTTTTTATCTT
618 TCTAAGATTTTATTTCAATAGATATGCGTTGTCAAAAGGGCAATTGTCGATAAGTTGTTTATCTT
* * * ** *
36563 CTATATTTCTGTAATGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTACACAATTTCA
683 CTATATTTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTATTAACCTGTACAATTCCA
* * * * *
36628 TTTTATTTCTTATG-AATAACGGCTGCATGATGAAAAGATTAGATTCTTTTAAGTGTTCCAAGTT
748 TTTTATTTCTT-TGTGA-AATGGTTGCATGCTGAAAAGATTAGCTTCTTTTAAGTGTTCCAA-TT
* *
36692 TTTTCTTGGAACATTAGGTTTATTTATTCATTG-TTTTTAAGTTAAGAGTGTTGTTGAGATGTGC
810 TTTT-TTGGAAAATTAGGTTTATTTATTCATTGTTTTTTAAGTTAAAAGTGTTGTTGAGATGTGC
*
36756 CTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAGGAGCTATAAAA
874 CTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCT-TAAAA
* * * * *
36805 ATATTTTTTCTAACAAATTATTATGCTACTTTAAAT-AGTTTGACATTGTTTATAAAGTATATTA
1 ATATTTTTTCTAACAAATTGTTATGATACTTTAAATCA-TTTGATATTTTTTACAAAGTATATTA
*
36869 TCAAAAATATAAATTTAGAAAATAGAATT-ATTGTTAGAAAGTGAGAAAATAAGTTACCTTAAAT
65 TGAAAAATATAAATTTAGAAAATAGAATTGA-TGTTAGAAAGTGAGAAAATAAGTTACCTTAAAT
* *
36933 TATTTTTTTGAGTATATATATATCATAAAGTAGGAGGCTAAAATACGAAAA-AAATCTTTCAACA
129 TATTTTTTTGAGTATATATATATCATAAAGTAAGAGGCTAAAATACGAAAACAATTCTTTCAACA
*
36997 TTTCTAAAATAATTTTTGAGAGGTATTTTTTATTCCAAAAGTTATCCGTTAACCTTGTTCTTTAC
194 TTTCTAAAAGAATTTTTG-GAGGTATTTTTTATTCCAAAAGTTATCCGTTAACCTTGTTCTTTAC
* * * * * *
37062 TTCATTTAGTCCCAAATGTACAATTAGCTTTAGAGTTTTTTAAAAAAAACATAAAGAAACATTAG
258 TTCATTTAATCCCAAATGTACAATTAGCTTCA-AATTTTTTATAAAAAACATAGAGAAATATTAG
* * * * *
37127 TTTACTTGTATCTCATTTTCTTAATTATGCTTTATAAATTATAATTACGAACAAATATTTACGAT
322 TTTACTTGTATCTCATTTTCTAAATTATGCTTTATAAATTATAAATATGGATAAATATTTACGAT
*
37192 ACATGTAAAATCAAGTTTATAATTGTTAACCATCTTAGGTTTACTGGTAGAGCGCATGACATTTA
387 ACATGTAAAATCAAGTTTATAATTGTTAA-C-TCTTA-G-TTACTGGTAGAGAGCATGACATTTA
*
37257 ACCATGTGGTCGTGGGTTCGATTCCAATTGACAGCAAAGGTTGAAGGTGTATCCATTGTTATAAT
448 ACCATGTGGTCGTGGGTTCGATTCCAA-TGACAGCAGAGGTTGAAGGTGTATCCATTGTTATAAT
* *
37322 AGATATGTATGATTGTTTAGGTTTATACTGTCTTAAAGTAGTTAAGATGT-AATTTTTTATTTTT
512 AGATATGTATGATTGTTTAGGTTTATACTGTCTTAAAATAGTTAAGATGTAAATTTTTTAGTTTT
* ** * * *
37386 TTAAATTTTGTTGGTAGTGTGCATGGCATTTAAACTAGCTGTCTAAGATTTTATTTCAATAGATA
577 CTAAACCTTGTTGGTAGTGTGCATGGCATTTAAACTTGTTATCTAAGATTTTATTTCAATAGATA
* * * *
37451 TGCGTTGTCAAAAGGGCAATTGTCAATAAGTTGATTT-TCTTCTATGTTTCTCTGGTGTGATAGT
642 TGCGTTGTCAAAAGGGCAATTGTCGATAAGTTG-TTTATCTTCTATATTTCTCTAGTGCGATAGT
* * *
37515 AA-GGGTTCATAGTGTTTCATCTATTGACCTGTACAATTCCATTTTATTTCTTTGTGAAATGGTT
706 AAGGGGTTCATAGTGTTGCTTCTATTAACCTGTACAATTCCATTTTATTTCTTTGTGAAATGGTT
* *
37579 ACATGCTGAAAAGATTAGCTTCTTTTAAGTGTTGCAATTTTTTTTGGGGAAAATTAGGTTTATTT
771 GCATGCTGAAAAGATTAGCTTCTTTTAAGTGTTCCAATTTTTTTT--GGAAAATTAGGTTTATTT
* * *
37644 ATTCATTGTTTTTTAAGTTAAAAGTGTTGTTGAGATATGCCTTTAAAAGAAGAG-TAGCAAAAGA
834 ATTCATTGTTTTTTAAGTTAAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAGCGCT-TCAAAAGA
*
37708 AGTAATTTTAGAAAGAGCTTCAAAA
898 AGTAGTTTTAGAAAGAGCTT-AAAA
*
37733 CTATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTGATATTTTTTACAAAGTATATTAT
1 ATATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTGATATTTTTTACAAAGTATATTAT
* * *
37798 GAAAAATATAAATTTAGAAAATTGAATTGATTTTAG-ATGTGAGAAAATAAGTTACCTTAAATTA
66 GAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTA
37862 TTTTT
131 TTTTT
37867 CTTACATATA
Statistics
Matches: 1705, Mismatches: 232, Indels: 153
0.82 0.11 0.07
Matches are distributed among these distances:
925 21 0.01
926 116 0.07
927 215 0.13
928 433 0.25
929 56 0.03
930 5 0.00
931 3 0.00
933 43 0.03
934 5 0.00
935 20 0.01
937 1 0.00
945 1 0.00
947 1 0.00
949 4 0.00
950 4 0.00
951 103 0.06
952 235 0.14
953 132 0.08
954 96 0.06
955 118 0.07
956 1 0.00
959 90 0.05
960 2 0.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.41
Consensus pattern (921 bp):
ATATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTGATATTTTTTACAAAGTATATTAT
GAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTA
TTTTTTTGAGTATATATATATCATAAAGTAAGAGGCTAAAATACGAAAACAATTCTTTCAACATT
TCTAAAAGAATTTTTGGAGGTATTTTTTATTCCAAAAGTTATCCGTTAACCTTGTTCTTTACTTC
ATTTAATCCCAAATGTACAATTAGCTTCAAATTTTTTATAAAAAACATAGAGAAATATTAGTTTA
CTTGTATCTCATTTTCTAAATTATGCTTTATAAATTATAAATATGGATAAATATTTACGATACAT
GTAAAATCAAGTTTATAATTGTTAACTCTTAGTTACTGGTAGAGAGCATGACATTTAACCATGTG
GTCGTGGGTTCGATTCCAATGACAGCAGAGGTTGAAGGTGTATCCATTGTTATAATAGATATGTA
TGATTGTTTAGGTTTATACTGTCTTAAAATAGTTAAGATGTAAATTTTTTAGTTTTCTAAACCTT
GTTGGTAGTGTGCATGGCATTTAAACTTGTTATCTAAGATTTTATTTCAATAGATATGCGTTGTC
AAAAGGGCAATTGTCGATAAGTTGTTTATCTTCTATATTTCTCTAGTGCGATAGTAAGGGGTTCA
TAGTGTTGCTTCTATTAACCTGTACAATTCCATTTTATTTCTTTGTGAAATGGTTGCATGCTGAA
AAGATTAGCTTCTTTTAAGTGTTCCAATTTTTTTTGGAAAATTAGGTTTATTTATTCATTGTTTT
TTAAGTTAAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAA
AGAGCTTAAAA
Found at i:37988 original size:141 final size:141
Alignment explanation
Indices: 37734--38009 Score: 421
Period size: 141 Copynumber: 2.0 Consensus size: 141
37724 GCTTCAAAAC
* *
37734 TATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTGATATTTTTTACAAAGTATATTATG
1 TATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTAATATTGTTTACAAAGTATATTATG
* * * *
37799 AAAAATATAAATTTAGAAAATTGAATTGATTTTAGATGTGAGAAAATAAGTTACCTTAAATTATT
66 AAAAATATAAATTTAGAAAATAGAATTGATGTAAGAAGTGAGAAAATAAGTTACCTTAAATTATT
37864 TTTCTTACATA
131 TTTCTTACATA
* * *
37875 TATTTTTTCTAACAAATT-TCTTTGTTACTTTAAATCATTTAATATTGTTTACAAAGTATGTTAT
1 TATTTTTTCTAACAAATTGT-TATGATACTTTAAATCATTTAATATTGTTTACAAAGTATATTAT
* *
37939 -AAAAATATTAATTTAGGAAATAGAATTGATGTAAGAAAGTGAGAAAATAAGTTACCTTAAATTA
65 GAAAAATATAAATTTAGAAAATAGAATTGATGTAAG-AAGTGAGAAAATAAGTTACCTTAAATTA
38003 TTTTTCT
129 TTTTTCT
38010 AAGTGTATAT
Statistics
Matches: 122, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
140 31 0.25
141 91 0.75
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (141 bp):
TATTTTTTCTAACAAATTGTTATGATACTTTAAATCATTTAATATTGTTTACAAAGTATATTATG
AAAAATATAAATTTAGAAAATAGAATTGATGTAAGAAGTGAGAAAATAAGTTACCTTAAATTATT
TTTCTTACATA
Found at i:38028 original size:6 final size:6
Alignment explanation
Indices: 38022--43409 Score: 6057
Period size: 6 Copynumber: 916.8 Consensus size: 6
38012 GTGTATATGT
* * * * * * * *
38022 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * * *
38070 ATGTGT ATATGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * *
38118 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
38166 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
38214 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
38262 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
38310 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
38358 ATGTGC ATGTGC ATGTGC ATGAGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
38406 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGT ATGTGT ATGTGT ATGTG-
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
38453 -TGTGTC TCTGTGT ATGTGT ATGTGTC TCTGTGT ATGT-- ATGTGT ATGTGT
1 ATGTG-C -ATGTGC ATGTGC ATGTG-C -ATGTGC ATGTGC ATGTGC ATGTGC
* *
38502 ATGTGT ATGTGT ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* *
38550 ATGTGC ATGTGC ATGTGC ATGTTC ATG-GC ATGTGC ATGTAC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
38597 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
38645 ATGTGC ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * *
38693 ATGTGT ATGTGT ATGTGTC TCTGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTG-C -ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
38743 ATGTGT ATGTGC ATGT-C ATGTGC ATGTGT ATGTGT ATCTG- ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
38789 ATGTGT ATGTGT ATGTGG ATGTGT ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* *
38837 ATGTGC ATGTGGC ATGTTC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGT
1 ATGTGC ATGT-GC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * *
38886 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
38934 ATGTGT ATGTGT ATGTGT ATGTGC ATGTGC ATATGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
38982 ATGTGC ATGTGC ATGTGC ATGTGG ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * *
39030 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
39078 ATGTGT ATGTGT ATGTGT ATGT-- ATGTGT ATGTGT ATGTGT ATGTCC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
39124 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGCGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGT--GC
* * * * *
39174 ATGTGC ATGTGC ATGT-- ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
39220 ATGTGG ATGTGC ATGTGC GTGTGC ATGTGC ATGTGC ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * *
39268 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGG ATGTGC ATGTGC ATGTGG
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
39316 ATGTGC ATGTGC ATGTGC GTGTGC ATGTGC ATGTGC GTGTGC ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
39364 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGG ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* *
39412 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
39460 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGTA ATCGT--
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-C AT-GTGC
* * * * * * *
39508 ATGTGT ATGTGT ATGTG- -TGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
39554 ATGTGT ATGTGC ATGTGT ATGTGT ATGTGG ATGTGT ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
39602 ATGTGG ATGTGC ATGTGC A-GTGC ATGTGC A--TGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
39647 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATG-GC ATGTTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATG-TGC ATGTGC
* *
39695 ATGTGC ATGTGC ATGTGC TTGGGC ATGTGC ATGTGC ATGTGC A-GTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
39742 ATGTGC ATGTG- ATGTGC ATGTGC ATGTGC ATGTGC A-GTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
39788 ATGGTGC ATGTGC ATG-GC ATGTGC ATGTGC ATGTGTG ATG-GC ATGTGC
1 AT-GTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-C ATGTGC ATGTGC
39836 -TGTG- ATGT-- -TGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
39879 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGTA ATGTG- ATGTGT ATATGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-C ATGTGC ATGTGC ATGTGC
* *
39927 TTGTGT ATGTGC ATGTGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC A--TGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
39977 -TGTGC ATGTTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATG-TGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
40025 ATGTGC ATGTGC ATGTGC ATGTGGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGT-GC ATGTGC ATGTGC ATGTGC ATGTGC
40074 ATGTGC ATGTGGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC -TGTGC
1 ATGTGC ATGT-GC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
40122 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
40169 GTGATGC ATGTGT ATGTGT ATCTG- ATGTGT ATGT-- TTGTGT ATGTGC
1 ATG-TGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
40215 ATGTG- A-GTGC ATGTGC ATGTGC ATGTGC ATG-GC ATGTGTGT ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC A--TGTGC ATGTGC
40262 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC A--TGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
40308 ATGGTG- ATGTGC ATGTGC ATG-GG ATGTGT ATGTGC ATGTGT ATGTGT
1 AT-GTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
40355 ATGTGC ATGTGT AT-TGT ATGTGT ATGT-- ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
40400 ATGTGC A-GTGC ATGTGC ATGTGC AGGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
40447 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
40495 ATGTGC ATGTGC ATGTGT ATGTGT ATCTG- ATGTGT ATGTGT TTGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
40542 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC A--TGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
40588 ATGTGC ATGTGC ATGTCC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
40636 ATGTGC ATGTGT ATGTGT ATGTGC ATGTGC ATGTTC ATGTGG ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
40684 ATGTGC ATGTGT ATGT-T ATGTG- TTGTGT ATG-GT ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
40729 A-GTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
40776 ---TGC ATGTG- A-ATGC A-GTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * *
40818 ATATGC ATGTGT ATGTGT ATCTG- ATGTGT ATGTGT TTGTGT ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
40865 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
40913 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGT ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
40961 ATGTGC ATGTGC ATGTGC ATGTGG ATGTGC ATGTGT ATGTGT ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
41009 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
41057 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC A--TGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
41103 ATGTGC ATGTGC ATGTGG ATGTGC ATGTGC ATGGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC AT-GTGC ATGTGC ATGTGC
41152 ATGTG- -TG-GC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
41197 ATGTGC -TGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
41243 ATGTGC ATGTGTGC ATGTGGC ATGTGT ATGT-- ATGTGC ATGTGC ATGTGC
1 ATGTGC A--TGTGC ATGT-GC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * *
41292 ATGTGG ATGTGT ATG-GC A-GTGT ATGTGT ATGCATGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATG--TGC ATGTGC ATGTGC
*
41340 ATGTGC ATGTGC ATGTGC ATGTGC A---GC ATGTTC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
41385 ATG-GG ATGTGC ATGTGT ATGTGT ATGTGC ATGTG- -TGTGC ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
41430 ATGGTGGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 AT-GT-GC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
41480 ATGTGC ATGTGC CTGTGC ATG-GC ATGTG- ATGTGC A--TGC AT-TGTC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-C
41524 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
41572 -TGTGC ATGTGC ATGTGC A--TGC ATGTGC ATGTTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATG-TGC ATGTGC ATGTGC
* * *
41618 ATGTGC ATGTGC ATGTGC ATGTGT ATGT-- ATCTG- ATGTGT ATGTG-
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
41662 TTGTGT ATGGTGC ATATGTGC ATGTGC ATGTGC ATGTGC AGGTGC ATGTGC
1 ATGTGC AT-GTGC --ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
41713 ATGTGC ATGTGC ATGTGC ATGTG- -TG-GT ATGTGC ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* *
41758 ATG-GC ATGTGC ATGTGC ATGTGG ATGT-- ATGTGC ATGTG- ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* *
41802 ATGTGC ATGTGT ATGTGT ATGT-- ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
41848 ATGTGC ATGTGTGC ATGTGC ATGTGTGC ATGTGC ATGTGC ATG-GC A--TGC
1 ATGTGC A--TGTGC ATGTGC A--TGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
41897 ATGTGC ATGTGC ATGTGGGC ATGTGC ATGTGC ATGTGT ATGTGC A--TGC
1 ATGTGC ATGTGC ATGT--GC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
41945 ATGTGC ATGTGC ATGTGC ATGTGC ATGT-T ATGTGC ATGTGC ATGTG-
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
41991 ATGTGC ATGTGC ATGTGC A--TGC ATGTGC ATGTGT ATGTGT ATCTG-
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
42036 ATGTGT ATGTG- -TTTGT ATGTGC ATGTGC ATGTGC ATGTG- ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
42081 ATGTGC ATGTGC ATGTGC A--TGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
42127 ATGTGC ATG-GT ATGTGC ATGTGC ATGTGC ATGTGT ATGTGT ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * * * * *
42174 ATGTGT ATGTGTG TTGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGTG
1 ATGTGC ATGTG-C ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTG-C
* * * * * *
42224 ATGTG- ATGTGT ATGTGT ATGTGG A-G-GT ATGTGT ATGT-- ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
42267 ATGTGC ATGTGC CTGTGC ATGTGC ATGTGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC A--TGTGC ATGTGC ATGTGC ATGTGC
42317 ATGTGC AT-TGC ATGTGC ATG-GC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* *
42363 -TGTGC AT-TGC ATGTGC ATTTGC ATGTGC ATGTGC ACGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * *
42409 ATGTTC ATGTGGC ATGTGC ATGTGC ATGTGC ATGTGT ATGTGTGT ATGTGT
1 ATGTGC ATGT-GC ATGTGC ATGTGC ATGTGC ATGTGC A--TGTGC ATGTGC
* * * *
42460 AT-TGT ATGTG- -T-TGT ATGTGT ATGTGC ATGTGT ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
42504 ATG-GC ATGT-T ATGTGT AT-CG- ATGTGT ATGTG- TTGTG- ATGT--
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
42544 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGT ATGTGT ATGT-- ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * *
42590 ATGT-- ATATGT ATGTGT ATGTG- -TGTGT ATGTGT ATGTGT ATGT--
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * *
42632 ATGTGT ATGTGT ATGT-- ATGTGT ATGTGT ATGTGT ATGTG- ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * *
42677 ATGTG- TTGTGT ATGTGT ATGTGT ATGTGTGT ATGTG- ATGTGC ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC A--TGTGC ATGTGC ATGTGC ATGTGC
* ** *
42725 ATGTGC ATGTGC ATGTG- ATGTGC -TGTG- TTGTTT TTGTG- ATG-GC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
*
42768 ATGTGC ATGTGC ATGTGC ATGCGC ATGTGC ATGTGC A--TGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
42814 ATGTGC ATGTGTGC ATGTGC ATGCTGC ATGTGC ATGCATGC ATGTGC ATGTGC
1 ATGTGC A--TGTGC ATGTGC ATG-TGC ATGTGC ATG--TGC ATGTGC ATGTGC
42867 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * * *
42915 ATGTGA ATGTGC ATGTGC ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
42963 ATGTGT ATGTGT ATGTG- TTGTGT ATGTGC ATGTGC ATGTGC ATGTGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC A--TGTGC
* * * *
43012 ATGTGT A-CTG- ATGTGT ATGT-- ATGTGT ATGTG- ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
43055 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * * * *
43103 ATGTGT ATGTGT ATGTGT ATGTGC ATGTGC ATGTGC ATGTGT ATGTGT
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
* * *
43151 ATCTG- ATGTGTGT ATGTGT ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC A--TGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
43200 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
43248 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
43296 AT-TGC AT-TGC ATGTGC A--TGC ATGTGC ---TGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
43337 ATGTGC ATGTGC ATGT-- ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC ATGTGC
43383 ATGTGC ATG-G- ATGTGC ATGTGC ATGTG
1 ATGTGC ATGTGC ATGTGC ATGTGC ATGTG
43410 TATATCATAA
Statistics
Matches: 4921, Mismatches: 233, Indels: 456
0.88 0.04 0.08
Matches are distributed among these distances:
3 16 0.00
4 153 0.03
5 320 0.07
6 4228 0.86
7 101 0.02
8 101 0.02
9 2 0.00
ACGTcount: A:0.17, C:0.11, G:0.34, T:0.39
Consensus pattern (6 bp):
ATGTGC
Found at i:41862 original size:8 final size:8
Alignment explanation
Indices: 41849--41880 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
41839 TGCATGTGCA
41849 TGTGCATG
1 TGTGCATG
41857 TGTGCA--
1 TGTGCATG
41863 TGTGCATG
1 TGTGCATG
41871 TGTGCATG
1 TGTGCATG
41879 TG
1 TG
41881 CATGTGCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.27
8 16 0.73
ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38
Consensus pattern (8 bp):
TGTGCATG
Found at i:44485 original size:21 final size:20
Alignment explanation
Indices: 44457--44496 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
44447 CATTACAGGA
44457 ATTTATGGCCTCAACAAAAT
1 ATTTATGGCCTCAACAAAAT
*
44477 ATTTCATGGCTTCAACAAAA
1 ATTT-ATGGCCTCAACAAAA
44497 ACCTTGATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (20 bp):
ATTTATGGCCTCAACAAAAT
Found at i:48287 original size:229 final size:229
Alignment explanation
Indices: 47886--48324 Score: 878
Period size: 229 Copynumber: 1.9 Consensus size: 229
47876 CAGTACACTG
47886 GGAGCATATCGAAGAGAAATGAGATGCCATGGCAAAACATTTTGGAAGTAAAGCTCTTTGATGTT
1 GGAGCATATCGAAGAGAAATGAGATGCCATGGCAAAACATTTTGGAAGTAAAGCTCTTTGATGTT
47951 TGGATATCGATTTTATGAGACCTTTTCCCCTCTTCTTTTGGTGATCTATACATACTTTTGGCGGT
66 TGGATATCGATTTTATGAGACCTTTTCCCCTCTTCTTTTGGTGATCTATACATACTTTTGGCGGT
48016 AGACTACATTTTCAAATGGGTTGAAGCCATGGCCACACCTCGGAATGATTCTAAGAGTGTGTTGA
131 AGACTACATTTTCAAATGGGTTGAAGCCATGGCCACACCTCGGAATGATTCTAAGAGTGTGTTGA
48081 AATTCTTACACAATATATACCCGATTTGGAGTAC
196 AATTCTTACACAATATATACCCGATTTGGAGTAC
48115 GGAGCATATCGAAGAGAAATGAGATGCCATGGCAAAACATTTTGGAAGTAAAGCTCTTTGATGTT
1 GGAGCATATCGAAGAGAAATGAGATGCCATGGCAAAACATTTTGGAAGTAAAGCTCTTTGATGTT
48180 TGGATATCGATTTTATGAGACCTTTTCCCCTCTTCTTTTGGTGATCTATACATACTTTTGGCGGT
66 TGGATATCGATTTTATGAGACCTTTTCCCCTCTTCTTTTGGTGATCTATACATACTTTTGGCGGT
48245 AGACTACATTTTCAAATGGGTTGAAGCCATGGCCACACCTCGGAATGATTCTAAGAGTGTGTTGA
131 AGACTACATTTTCAAATGGGTTGAAGCCATGGCCACACCTCGGAATGATTCTAAGAGTGTGTTGA
48310 AATTCTTACACAATA
196 AATTCTTACACAATA
48325 ATAATATATT
Statistics
Matches: 210, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
229 210 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (229 bp):
GGAGCATATCGAAGAGAAATGAGATGCCATGGCAAAACATTTTGGAAGTAAAGCTCTTTGATGTT
TGGATATCGATTTTATGAGACCTTTTCCCCTCTTCTTTTGGTGATCTATACATACTTTTGGCGGT
AGACTACATTTTCAAATGGGTTGAAGCCATGGCCACACCTCGGAATGATTCTAAGAGTGTGTTGA
AATTCTTACACAATATATACCCGATTTGGAGTAC
Found at i:53080 original size:29 final size:29
Alignment explanation
Indices: 53047--53109 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
53037 GATATATTAT
53047 GTCACTAAAAATGTGACAATATCTCCTTC
1 GTCACTAAAAATGTGACAATATCTCCTTC
*
53076 GTCACTAAAAATGTGACAATATCTCTTTC
1 GTCACTAAAAATGTGACAATATCTCCTTC
53105 GTCAC
1 GTCAC
53110 ACATAAGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (29 bp):
GTCACTAAAAATGTGACAATATCTCCTTC
Found at i:53448 original size:194 final size:194
Alignment explanation
Indices: 53076--53449 Score: 435
Period size: 194 Copynumber: 1.9 Consensus size: 194
53066 TATCTCCTTC
*** *
53076 GTCACTAAAAATGTGACAATATCTCTTTCGTCACACATAAGTTGATTTTAATGCATTATTTTTTA
1 GTCACTAAAAATGTGACAATATCTCTTTCGTCACACATAAGTTGATTTTAATGCATTATCCGTGA
* * ** * *
53141 CAATATAAATTATCAATAACGAAATCTTATTTAATTTAGTGACGTAACCAACTGTCATAGAATAT
66 CAATATAAATCATCAATAACAAAATCTTACATAATTTAGTGACATAACCAACTGCCATAGAATAT
* * * * *
53206 AAATTATAAAGTGACGTTATGCATAAACGTCATTCATAATATTATTAGGTAACATTTATATTAT
131 AAATTATAAAGTGACATTATACATAAACGCCATCCATAATACTATTAGGTAACATTTATATTAT
* * * * * *
53270 GTCATTAAAAATTTGACAATATCTCTTTCGTCATATATAGGTTGATTTTAATGTATTATCCGTGA
1 GTCACTAAAAATGTGACAATATCTCTTTCGTCACACATAAGTTGATTTTAATGCATTATCCGTGA
* * ** ** *
53335 CGATATAAATCATCAATAACAAAATTTTACATAATTTAGTGACATAATTAGTTGCCATTGAATAT
66 CAATATAAATCATCAATAACAAAATCTTACATAATTTAGTGACATAACCAACTGCCATAGAATAT
* * * * *
53400 TAATTATATAGTGACATTATATATAAATGCCATCCATGCA-ACTATTAGGT
131 AAATTATAAAGTGACATTATACATAAACGCCATCCAT-AATACTATTAGGT
53450 GATGATATAC
Statistics
Matches: 146, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
194 145 0.99
195 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (194 bp):
GTCACTAAAAATGTGACAATATCTCTTTCGTCACACATAAGTTGATTTTAATGCATTATCCGTGA
CAATATAAATCATCAATAACAAAATCTTACATAATTTAGTGACATAACCAACTGCCATAGAATAT
AAATTATAAAGTGACATTATACATAAACGCCATCCATAATACTATTAGGTAACATTTATATTAT
Found at i:55962 original size:54 final size:53
Alignment explanation
Indices: 55890--56061 Score: 245
Period size: 54 Copynumber: 3.2 Consensus size: 53
55880 ACAAATGTCG
* * *
55890 ATACGGTAATTCACAAACTTATTATAAATTACTTAAGTTGCACACATAGTGCCA
1 ATACGGTAATTCATAAACTTATTATGAATTACTTAGGTTGCACACATAGTG-CA
* *
55944 ATACAGTAATTCATAAACTTATTATGAATTACTTAGGTTTCACACATAGTGTCA
1 ATACGGTAATTCATAAACTTATTATGAATTACTTAGGTTGCACACATAGTG-CA
* * * *
55998 ATATGATAATTCATAAACTTATTATGAATTACTTAGGTTGCACATAAAGTGCA
1 ATACGGTAATTCATAAACTTATTATGAATTACTTAGGTTGCACACATAGTGCA
56051 ATACGGTAATT
1 ATACGGTAATT
56062 TCAATATATA
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 11 0.11
54 93 0.89
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (53 bp):
ATACGGTAATTCATAAACTTATTATGAATTACTTAGGTTGCACACATAGTGCA
Found at i:60739 original size:2 final size:2
Alignment explanation
Indices: 60734--60775 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
60724 ATTTTTTGAG
60734 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60776 GTGTGTGTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64076 original size:24 final size:24
Alignment explanation
Indices: 63966--64069 Score: 156
Period size: 24 Copynumber: 4.4 Consensus size: 24
63956 ATCAAAACAT
*
63966 AATCCAGGTCAAGTATCTGATCAA
1 AATCCAGGTCAAGTATCAGATCAA
63990 AAT-CAGGTCAAGTATCAGATCAA
1 AATCCAGGTCAAGTATCAGATCAA
* *
64013 AATCCAGGTCAAGTATCCGATCAG
1 AATCCAGGTCAAGTATCAGATCAA
* *
64037 AATCCAGGTCAAGTATCATATCAG
1 AATCCAGGTCAAGTATCAGATCAA
64061 AATCCAGGT
1 AATCCAGGT
64070 TAGGTATTAT
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
23 22 0.30
24 52 0.70
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATCAA
Found at i:68706 original size:24 final size:24
Alignment explanation
Indices: 68679--68790 Score: 163
Period size: 24 Copynumber: 4.7 Consensus size: 24
68669 ATCAAAACAT
68679 AATCCAGGTCAAGTATCTGATCAA
1 AATCCAGGTCAAGTATCTGATCAA
68703 AATCCAGGTCAAGTATCAT-ATCAA
1 AATCCAGGTCAAGTATC-TGATCAA
* *
68727 AATCCAGGTCAAGTATCCGATCAG
1 AATCCAGGTCAAGTATCTGATCAA
* *
68751 AATCCAGGTCAAGTATCAGATCAG
1 AATCCAGGTCAAGTATCTGATCAA
*
68775 AATCCAGGTCAGGTAT
1 AATCCAGGTCAAGTAT
68791 TATAATAGAA
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
24 81 0.99
25 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCTGATCAA
Found at i:70238 original size:27 final size:27
Alignment explanation
Indices: 70186--70238 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
70176 TTTCTTAATT
* * *
70186 TCTTAACCAAATAATTTTGATATTAAC
1 TCTTAACAAAATAATTATAATATTAAC
70213 TCTTAACGAAAATAATTATAAT-TTAA
1 TCTTAAC-AAAATAATTATAATATTAA
70239 AGATCATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (27 bp):
TCTTAACAAAATAATTATAATATTAAC
Found at i:71203 original size:21 final size:22
Alignment explanation
Indices: 71179--71226 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
71169 CTCGGTCAAA
* *
71179 GTCAAAGGT-CGTTTAACGCCG
1 GTCAAAGGTCCGGTCAACGCCG
*
71200 GTCAAAGTTCCGGTCAACGCCG
1 GTCAAAGGTCCGGTCAACGCCG
71222 GTCAA
1 GTCAA
71227 CAGTCGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (22 bp):
GTCAAAGGTCCGGTCAACGCCG
Found at i:71883 original size:20 final size:20
Alignment explanation
Indices: 71858--71904 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
71848 GTTGAGGGGA
71858 ATGGGAAAATGAGAAGTATT
1 ATGGGAAAATGAGAAGTATT
71878 ATGGGAAAATGAGAAGTATT
1 ATGGGAAAATGAGAAGTATT
71898 ATGGGAA
1 ATGGGAA
71905 CTTATCGTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.32, T:0.23
Consensus pattern (20 bp):
ATGGGAAAATGAGAAGTATT
Found at i:74225 original size:932 final size:923
Alignment explanation
Indices: 72084--74076 Score: 2670
Period size: 932 Copynumber: 2.1 Consensus size: 923
72074 TATATATATA
* * * * * * *
72084 TATATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCTTTCAACATTTCTAAAAT
1 TATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTTCTAAAAT
* * * *
72149 AATTTTTTTGGAGTTATTTTTTATTCAAAAAATTATA-AGTTAACCTTGTTCTTTATTTCATTTA
66 AA-TTTTTAGGAGTTATATTTTATTCAAAAAGTTATAGA-TTAACCTTGGTCTTTATTTCATTTA
* * * * * * * *
72213 ATCCCAAACGTACAATTA-ACTTCAATTTAT-TTGTGTGAAAATATTGAGAAATAT-TAGTTTA-
129 A---CTAATGTACAATTAGA--T-AATTTCTCATGTG-AAAAACATAGAAAAATATAT-GTTTAT
* * * * * * * * * *
72274 CCTATATCT-CATTTTCTAAACAATACTTTACAGATTTTAAATTTGGATAAATATTTACGATACA
186 TC-A-AT-TAAATGTTCTAAACAATACTTTATAGACTTCAAATATGAAGAAATATTTACGA-AAA
*
72338 -TGTAAAATTAAGTTTATAATAGTTAGATGTCTTAGCTCAGCTGGTAGAGCGCATAGCTTTTAAC
247 GTGTAAAATTAAGTTTATAATTGTTAGATGTCTTAGCTCAGCTGGTAGAGCGCATAGCTTTTAAC
* * *
72402 CATGTGGTTGTGGGTTCAATTCCCACAGACAGCTGAGGTTGAGGGTGTATCCATTGTTATAATTG
312 CATGTGGTCGTGGGTTCAATTCCCACAGACAGCTGAGGTTGAAGGTGTATCCATTGTTATAATAG
* *
72467 ATTTGTATGATTGTTTACATTTATATTATCTTAAAATAGTTAAGATGTAATTTTTTTTTTGTTTT
377 ATTTGTATGATTGTTTACATTTATATTATCTAAAAATAGTTAACA-GTAATTTTTTTTTTGTTTT
*
72532 CTAAACCTTATTGGTAATGTGCATGAAATCTAAACTTGTTCTCTAAGATTTTATTCACATAGATG
441 CTAAACCTTATTGGTAATGTGCATGAAATCTAAACTCGTTCTCTAAGATTTTATTCACATAGATG
* ** * *
72597 AGTTGTTGAAAGGGTAATTGTTGATAAGTTTTTTATCTTCTATATTTCTCTAGTGTGATAGTAAG
506 AGTGGTTGAAAGGGTAATTGGCGATAAGTTGTTTATCTTCTATATTTCTCTAGTGCGATAGTAAG
* *
72662 GGGTTCATAGTGTTCGTTCTGTTAACCTATACAATTTCATTTTATTTCTTGTGTGTAACGGCTAC
571 GGGTTCATAGTGTTCGTTCTGTTAACCTATACAATTTCATTTTATTTCCTGTGTGTAACGACTAC
* * *
72727 ATGCTGAAAAGATTAGATTCTTTTAAGTGTTCCAAGTTTTTTTTCTTGGAAAATTAGGTTTATTT
636 ATGCAGAAAAGATTAGATTCTTTTAAGTGTTCCAAG-TTTTTTTCGTGGAAAATTAGGTCTATTT
* * * *
72792 ATTCATTTTTTCAAGTTAAAAGTGTTGTTGAGATGTTCCTTTAAAAGAAATGCTTCAAAAGATGT
700 ATTCATGTTTTCAAGTTAAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAACGCTTCAAAAGAAGT
* *
72857 AGTTTTAGAAAGAGCTTTAAAAAATATTTTATCAAATTGTTATGTGACTTTAAATAGTTTGATCT
765 ACTTTTAGAAAGAGCTTTAAAAAATATTTTATCAAATTGTTATGTGACTTTAAATAGTTTGATAT
*
72922 TGTTTACAAAGTATAATATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAA
830 TGTTTACAAAGTATAATATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTCAGAA
72987 AATAAGTTACCTTAAATTATTTTTATGAG
895 AATAAGTTACCTTAAATTATTTTTATGAG
73016 TATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTTCTAAAAT
1 TATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTTCTAAAAT
* * * *
73081 AATTTTTGGGTGTTATATTTTATTCAAAAAGTTATCGATTAACCTTGTTCTTTATTTCATTTAAT
66 AATTTTTAGGAGTTATATTTTATTCAAAAAGTTATAGATTAACCTTGGTCTTTATTTCATTTAA-
** **
73146 CCTAAATGTACAATTAGTATCAATTTCTTTTGTGAAAAACATAGAAAAATATATGTTTACTTGTA
130 -CT-AATGTACAATTAG-AT-AATTTCTCATGTGAAAAACATAGAAAAATATATGTTTA-TTCAA
* * * * * * * *
73211 TTACATTTTCTAAACAATACTTTATAGATTTTAAATATGGATAAATATTTACGATACGTGTAAAA
190 TTAAATGTTCTAAACAATACTTTATAGACTTCAAATATGAAGAAATATTTACGAAAAGTGTAAAA
* * *
73276 TTAAGTTTATAATTGTTAGTTGTCTTAGCTCAGCTGGTCGAGCGCATGGCTTTTAACCATGTGGT
255 TTAAGTTTATAATTGTTAGATGTCTTAGCTCAGCTGGTAGAGCGCATAGCTTTTAACCATGTGGT
* * **
73341 CGTGGGTTCGATTCCCACAGACAG-TGGAGGTTGAAGTTGTATTTATTGTTATAATAGATTTGTA
320 CGTGGGTTCAATTCCCACAGACAGCT-GAGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTA
*
73405 TGATTGTTTAGATTTATATTATCTAAAAATAGTTAACA-TAATTTTTTTTTTAGTTTTCTAAACC
384 TGATTGTTTACATTTATATTATCTAAAAATAGTTAACAGTAATTTTTTTTTT-GTTTTCTAAACC
* * * * *
73469 TTGTTGGTAGTGTGCATGACATTTAAACTCGTTGTCTAAGATTTTATTC-CAATAGAT-ATGTGG
448 TTATTGGTAATGTGCATGAAATCTAAACTCGTTCTCTAAGATTTTATTCAC-ATAGATGA-GTGG
*
73532 TCGTG-AA-GGTAATTGGCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGG
511 T--TGAAAGGGTAATTGGCGATAAGTTGTTTATCTTCTATATTTCTCTAGTGCGATAGTAAGGGG
* * *
73595 TTCATATTGTT-GCTTCTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACAT
574 TTCATAGTGTTCG-TTCTGTTAACCTATACAATTTCATTTTATTTCCTGTGTGTAACGACTACAT
* *
73659 GCCAG-AAAGATTAGCTTGTTTTAAGTGTTCCAAG-TTTTTTCGTGGAAAATTAGGTCTATTTAT
638 G-CAGAAAAGATTAGATTCTTTTAAGTGTTCCAAGTTTTTTTCGTGGAAAATTAGGTCTATTTAT
*
73722 TCAATGTTTTCAAGTTAAAATTGTTGTTGAGATGTGCCTTTAAAAGAAACGCTTCAAAAGAAGTA
702 TC-ATGTTTTCAAGTTAAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAACGCTTCAAAAGAAGTA
* * *
73787 CTTTTAGAAAGAGCTTTAAAAATATTTTTTCTATCAGATTGTTATGTTACTTTAAATAGTTTGAT
766 CTTTTAGAAAGAGCTTTAAAAA-A-TATTT-TATCAAATTGTTATGTGACTTTAAATAGTTTGAT
* * *
73852 ATTGTTTACAAAGTGTATTATGAAAAATATAAATTTAGAAAATAGAATTGATGTTATAAAGTCAG
828 ATTGTTTACAAAGTATAATATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTCAG
* *
73917 AAAATAAGTTACCTTAAATTATTTTTCTGTG
893 AAAATAAGTTACCTTAAATTATTTTTATGAG
73948 TATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTTCTAAAAT
1 TATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTTCTAAAAT
*
74013 AATTTTTAGGAGTTATTTTTTATTCAAAAAGTTATA-AGTTAACCTTGGTCTTTATTTCATTTAA
66 AATTTTTAGGAGTTATATTTTATTCAAAAAGTTATAGA-TTAACCTTGGTCTTTATTTCATTTAA
74077 TATGAAATAA
Statistics
Matches: 953, Mismatches: 85, Indels: 46
0.88 0.08 0.04
Matches are distributed among these distances:
928 29 0.03
929 94 0.10
930 206 0.22
931 311 0.33
932 312 0.33
933 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (923 bp):
TATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTTCTAAAAT
AATTTTTAGGAGTTATATTTTATTCAAAAAGTTATAGATTAACCTTGGTCTTTATTTCATTTAAC
TAATGTACAATTAGATAATTTCTCATGTGAAAAACATAGAAAAATATATGTTTATTCAATTAAAT
GTTCTAAACAATACTTTATAGACTTCAAATATGAAGAAATATTTACGAAAAGTGTAAAATTAAGT
TTATAATTGTTAGATGTCTTAGCTCAGCTGGTAGAGCGCATAGCTTTTAACCATGTGGTCGTGGG
TTCAATTCCCACAGACAGCTGAGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTATGATTGT
TTACATTTATATTATCTAAAAATAGTTAACAGTAATTTTTTTTTTGTTTTCTAAACCTTATTGGT
AATGTGCATGAAATCTAAACTCGTTCTCTAAGATTTTATTCACATAGATGAGTGGTTGAAAGGGT
AATTGGCGATAAGTTGTTTATCTTCTATATTTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTC
GTTCTGTTAACCTATACAATTTCATTTTATTTCCTGTGTGTAACGACTACATGCAGAAAAGATTA
GATTCTTTTAAGTGTTCCAAGTTTTTTTCGTGGAAAATTAGGTCTATTTATTCATGTTTTCAAGT
TAAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAACGCTTCAAAAGAAGTACTTTTAGAAAGAGCT
TTAAAAAATATTTTATCAAATTGTTATGTGACTTTAAATAGTTTGATATTGTTTACAAAGTATAA
TATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTCAGAAAATAAGTTACCTTAAA
TTATTTTTATGAG
Found at i:76565 original size:29 final size:29
Alignment explanation
Indices: 76491--76565 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76481 ACTGTTGACC
*
76491 GGGTGCTATTTTGGTAATTATTTGGGAAA
1 GGGTGCTATTTTGGTAATTATTTGGAAAA
* * *
76520 TGGTGCTATTCTGGTAATTATTTTGAAAA
1 GGGTGCTATTTTGGTAATTATTTGGAAAA
* *
76549 GGGTGTTATTTTTGTAA
1 GGGTGCTATTTTGGTAA
76566 AACAAAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.24, C:0.04, G:0.27, T:0.45
Consensus pattern (29 bp):
GGGTGCTATTTTGGTAATTATTTGGAAAA
Found at i:76648 original size:29 final size:29
Alignment explanation
Indices: 76594--76665 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
76584 TGACAATTTC
* *
76594 GTAATTTTTTTTAAAATAGTGATATTTTA
1 GTAATTATTTTGAAAATAGTGATATTTTA
* *
76623 GTAATTATTTTGAAAAT-GATGCTATTTTT
1 GTAATTATTTTGAAAATAG-TGATATTTTA
76652 GTAAATTATTTTGA
1 GT-AATTATTTTGA
76666 CCAGAACTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 1 0.03
29 25 0.68
30 11 0.30
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.53
Consensus pattern (29 bp):
GTAATTATTTTGAAAATAGTGATATTTTA
Found at i:77371 original size:24 final size:24
Alignment explanation
Indices: 77339--77442 Score: 136
Period size: 24 Copynumber: 4.3 Consensus size: 24
77329 TATCTGGTTT
* * *
77339 TTGACCTGGATCTTAATATGAAAC
1 TTGACCTGGATTTTTATATGATAC
77363 TTGACCTGGATTTTTATATGATAC
1 TTGACCTGGATTTTTATATGATAC
77387 TTGACCTGGATTTTTATATGATAC
1 TTGACCTGGATTTTTATATGATAC
* * * * *
77411 TTGACATGGATTCTGATCTGTTAC
1 TTGACCTGGATTTTTATATGATAC
77435 TTGACCTG
1 TTGACCTG
77443 AATTATGTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (24 bp):
TTGACCTGGATTTTTATATGATAC
Found at i:81035 original size:943 final size:937
Alignment explanation
Indices: 79206--81146 Score: 2889
Period size: 943 Copynumber: 2.1 Consensus size: 937
79196 CCAAGTTATC
79206 GGTA-TTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTAT-TTCATTTAATCCCAAATGTA
1 GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTT-TCTTCATTTAATCCCAAATGTA
* * * ** *
79269 CAATTAGCTTCAATTTTTGTGTGTGAAAAAATATAGAAATATTAGTTTACTTGTATCACATTTTC
65 CAATTAGCTTCAAATTGTGTGTGTGAAAAAATAGAGAAATATTAGTTTACTCATATCACAATTTC
* * * * *
79334 TAAACAATTCTTTATAGATTTTAAATATGGATAAATATTTACGATTCATGTAAAATTAAGTTTAT
130 TAAACAAGTCTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTAT
* * *
79399 AATTGTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGGCTTTTAACCATGTGGTCATGGGTTCA
195 AATTGTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGACTTTGAACCATGTGCTCATGGGTTCA
* *
79464 ATTCCCACAAACATCGGATGTTGAAGGTGTATCCATTGTTATAATGGAGTTGTATGATTATTTAG
260 ATTCCCACAAACATCGGAGGTTGAAGGTGTATCCATTGTTATAATAGAGTTGTATGATTATTTAG
* * * * *
79529 ATTTATATTTATCTTAAAATAGTTAAGATGGATTTTTTTTAGTTTTCTAAACCCTGTTGGTAGTG
325 ATTTATATTTATATTAAAATAGTTAAAATGAATTTTTTATAATTTTCTAAACCCTGTTGGTAGTG
* * * *
79594 TGCATGGCATTTGAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCGTGAGGGTAA
390 TGCATGGCATTTAAACTTATTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGACGGTAA
* * * *
79659 TTGTCAATAAGTTATTTATCTTTTATATTTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTGCT
455 TTGTCAATAAGTTATTTAGCTTCTATATTTCTCTAGAGCGATAGTAAGGGGTTCATAGTGTTACT
* * * *
79724 TTTGTTAATCTGTACAATTTTATTTTAATTCATGTGTGTAATGATTACATGTTGAAAAGATTAGC
520 TTTGTTAACCTGTACAATTTCATTTTAATTCATGTGTGTAACGATTACATGCTGAAAAGATTAGC
*
79789 TTCTTTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTTGGTTTATTTATTCATTGTTTTTCAAGCT
585 TTCTTTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGCT
* *
79854 AAAAGTGTTGTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGTAGTACTTTTAGAAAGAACTT
650 AAAAGTGTTCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAACTT
* * * *
79919 TAAAAATATTTTTTGTATCAAATTGTTATGTTACTTTAAACAGATAGATATTGTTTACAAAGTAT
715 TAAAAATATTTTTTCTATCAAATTGTTATGTTACTTTAAACAGATAGATACTGCTTACAAAGAAT
*
79984 ATTATGAAAAATATAAATTTAGAAAATATAATTGATGGTACAAAGTGAGAAAATAAGTTACCTTA
780 ATTATGAAAAATATAAATTAAGAAAATATAATTGATGGTACAAAGTGAGAAAATAAGTTACCTTA
* * *
80049 AATTATTTTTCTGAGTGTATATATATATATCATAAAGTATGAGGCTAAAATACGAAAACAATTCT
845 AATTATTTTTCTGAGTATATATATATATATCATAAACTATGAGGCTAAAATACAAAAACAATTCT
* *
80114 TTCAACATTTCTTAAATAATTTTTGGGA
910 TTCAACATTTCTAAAATAATTTTTAGGA
**
80142 GGTATTTTTTATTCAAAAAGTTATCATTTAACCTTGTTCTTTTCTTCATTTAATCCCAAATGTAC
1 GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTTCTTCATTTAATCCCAAATGTAC
* *
80207 AATTAGCTTCAAATTGTGTGTGTGAAAAACATAGATAAATATTAGTTTAC-CATATCTCAATTTC
66 AATTAGCTTCAAATTGTGTGTGTGAAAAA-ATAGAGAAATATTAGTTTACTCATATCACAATTTC
* *
80271 TAAATTACGT-TTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTA
130 TAAA-CAAGTCTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTA
** *
80335 TAATTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCGCATGACTTTGAATCATGTGCT-AGTGGGTT
194 TAATTGTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGACTTTGAACCATGTGCTCA-TGGGTT
* * *
80399 CGATTCCCA-AAGACGGT-GGAGGTTG-AGG-GATATCCATTGTTAATAATATAGATATGTATGA
258 CAATTCCCACAA-AC-ATCGGAGGTTGAAGGTG-TATCCATTGTT-ATAATAGAG-T-TGTATGA
*
80460 TTGTTTAGATTTATATTTATATTAAAATAGTTAAAATGTAAATTGTTTTCATAATTTTCTAAACC
317 TTATTTAGATTTATATTTATATTAAAATAGTTAAAATG--AATT-TTTT-ATAATTTTCTAAACC
* * * * *
80525 TTGTTGGTTGTGTGCATGTCATTTAAACTTATTTTCTAAGATTTTATTCCAATAGATATGCGTTG
378 CTGTTGGTAGTGTGCATGGCATTTAAACTTATTGTCTAAGATTTTATTCCAATAGATATGCATTG
* * * *
80590 TCATGACGGTAATTGTCGATAAGTTGTTTAGCTTCTATATTTCTCTGGAGCGATAGTAAGGGTTT
443 TCATGACGGTAATTGTCAATAAGTTATTTAGCTTCTATATTTCTCTAGAGCGATAGTAAGGGGTT
*
80655 CATAGTGTTACTTTTGTTAACCTGTACAATTTCATTTTAATTCCTGTGTGTAACGATTACATGCT
508 CATAGTGTTACTTTTGTTAACCTGTACAATTTCATTTTAATTCATGTGTGTAACGATTACATGCT
*
80720 GAAAAGATTATCTTCTTTTAAGTGTTCCAAGT-TTTTTCGTGGAAAATTAGGTTTATTTATTCAT
573 GAAAAGATTAGCTTC-TTTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATTTATTCAT
* *
80784 TGTTTTTCAAGTTAAAAGTGTTCTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTT
637 TGTTTTTCAAGCTAAAAGTGTTCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTT
* * * * *
80849 TTAGAAAGAGCTTTGAAAATA-TTTTTCTATCAAATTGTTATGTTAC-TTAAATAGTTTGATACT
702 TTAGAAAGAACTTTAAAAATATTTTTTCTATCAAATTGTTATGTTACTTTAAACAGATAGATACT
* *
80912 GCTTACAAAGAATATTATGAAAAGTATAAATTAAGAAAATATAATTGATGTTACAAAGTGAGAAA
767 GCTTACAAAGAATATTATGAAAAATATAAATTAAGAAAATATAATTGATGGTACAAAGTGAGAAA
80977 ATAAGTTACCTTAAATTATTTTTCTGAGTATATATATATATATATCATAAACTATGAGGCTAAAA
832 ATAAGTTACCTTAAATTATTTTTCTGAG--TATATATATATATATCATAAACTATGAGGCTAAAA
81042 TACAAAAACAATTCTTTCAACATTTCTAAAATAATTTTTAGGA
895 TACAAAAACAATTCTTTCAACATTTCTAAAATAATTTTTAGGA
* * * *
81085 GATATATTTTTATTCAAAAAGTCATCGGTTAACCTTGTTCTTTACATCATTTAATCCCAAAT
1 GGTAT-TTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTTCTTCATTTAATCCCAAAT
81147 ATTAGTTTAC
Statistics
Matches: 901, Mismatches: 85, Indels: 30
0.89 0.08 0.03
Matches are distributed among these distances:
935 1 0.00
936 22 0.02
937 227 0.25
938 22 0.02
939 42 0.05
941 104 0.12
942 28 0.03
943 388 0.43
944 67 0.07
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (937 bp):
GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTTCTTCATTTAATCCCAAATGTAC
AATTAGCTTCAAATTGTGTGTGTGAAAAAATAGAGAAATATTAGTTTACTCATATCACAATTTCT
AAACAAGTCTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATA
ATTGTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGACTTTGAACCATGTGCTCATGGGTTCAA
TTCCCACAAACATCGGAGGTTGAAGGTGTATCCATTGTTATAATAGAGTTGTATGATTATTTAGA
TTTATATTTATATTAAAATAGTTAAAATGAATTTTTTATAATTTTCTAAACCCTGTTGGTAGTGT
GCATGGCATTTAAACTTATTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGACGGTAAT
TGTCAATAAGTTATTTAGCTTCTATATTTCTCTAGAGCGATAGTAAGGGGTTCATAGTGTTACTT
TTGTTAACCTGTACAATTTCATTTTAATTCATGTGTGTAACGATTACATGCTGAAAAGATTAGCT
TCTTTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGCTA
AAAGTGTTCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAACTTT
AAAAATATTTTTTCTATCAAATTGTTATGTTACTTTAAACAGATAGATACTGCTTACAAAGAATA
TTATGAAAAATATAAATTAAGAAAATATAATTGATGGTACAAAGTGAGAAAATAAGTTACCTTAA
ATTATTTTTCTGAGTATATATATATATATCATAAACTATGAGGCTAAAATACAAAAACAATTCTT
TCAACATTTCTAAAATAATTTTTAGGA
Found at i:81886 original size:2 final size:2
Alignment explanation
Indices: 81879--81903 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
81869 TTAAATTATT
81879 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
81904 CATAAAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84203 original size:944 final size:938
Alignment explanation
Indices: 82308--84246 Score: 2901
Period size: 944 Copynumber: 2.1 Consensus size: 938
82298 AAGTTATCGG
*
82308 TATTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTATTTCATTTAATCCCAAATGTACAAT
1 TATTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAAT
* * * *
82373 TAGCTTCAATTTTTGTGTGTGAAAAAATATAGAAATATTAGTTTACTTGTATCACATTTTCTAAA
66 TAGCATCAAATTTTGTGTGTGAAAAAATAGAGAAATATTAGTTTACTTGTATCACAATTTCTAAA
* * * * * *
82438 CAATTCTTTATAGATTTTAAATATGGATAAATATTTACGATTCGTGTAAAATTAAGCTTATAATT
131 CAAGTCTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAACTTATAATT
* * *
82503 GTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGGCTTTTAACCATGTGGTCATGGGTTCAATTC
196 GTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGACTTTGAACCATGTGCTCATGGGTTCAATTC
* * *
82568 CCACAAACAGTGGATGTGAAGGTGTATCCATCGTTATAATGGAGTTGTATGATTTTTTAGATTTA
261 CCACAAACAGTGGAGGTGAAGGTGTATCCATCGTTATAATAGAGTTGTATGATTGTTTAGATTTA
* * * * *
82633 TATTTATCTTAAAATAGTTAAGATGGATTTTTTTTAGTTTTCTAAACCCTGTTGGTAGTGTGCAT
326 TATTTATATTAAAATAGTTAAAATGAATTTTTTATAATTTTCTAAACCCTGTTGGTAGTGTGCAT
* * * *
82698 GGCATTTGAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCGTGAGGGTAATTGTC
391 GGCATTTAAACTTATTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGACGGTAATTGTC
* * *
82763 GATAAGTTATGTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTTTGT
456 GATAAGTTATGTAGCTTCTATATTTCTCTGGAGCGATAGTAAGGGGTTCATAGTGTTACTTTTGT
* *
82828 TAATCTGTACAATTTTATTTTATTTCCTGTGTGTAACGATTACATACTGAAAAGATTAGCTTCTT
521 TAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATACTGAAAAGATTAGCTTCTT
**
82893 TTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGCTAAAA
586 TTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATAGATTCATTGTTTTTCAAGCTAAAA
* * *
82958 GTGTTGTTCAGATGTTCCTTTAAAAGAAGCGCTTCAAAAGTAGTACTTTTAGAAAGAACTTTAAA
651 GTGTTCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAACTTTAAA
* * * *
83023 AATATTTTTTGTATCAAATTGTTATGTTACTTTAAACAGATAGATATTGTTTACAAAGTATATTA
716 AATATTTTTTCTATCAAATTGTTATGTTACTTTAAACAGATAGATACTGCTTACAAAGAATATTA
* *
83088 TGAAAAATATAAATTTAGAAAATATAATTGATGGTAGAAAGTGAGAAAATAAGTTACCTTAAATT
781 TGAAAAATATAAATTAAGAAAATATAATTGATGGTACAAAGTGAGAAAATAAGTTACCTTAAATT
* * *
83153 ATTTTTCTGAGTGTATATATATATATCATAAAGTATGAGGCTAAAATACGAAAACAATTCTTCCA
846 ATTTTTCTGAGTATATATATATATATCATAAACTATGAGGCTAAAATACAAAAACAATTCTTCCA
* *
83218 ACATTTCTTAAATAATTTTTTAGAGGTA
911 ACATTTCTAAAATAATTTTTTAGAGATA
* * *
83246 T-TTTTTCTTCAAAAAGTTATCAGTTAACCTTGTTCTTTACTTCATTTAATCCAAAATGTACAAT
1 TATTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAAT
* *
83310 TAGCATCAAATTTTGTGTGTGAAAAACATAGATAAATATTAGTTTACTT-TATCTCAATTTCTAA
66 TAGCATCAAATTTTGTGTGTGAAAAA-ATAGAGAAATATTAGTTTACTTGTATCACAATTTCTAA
* * *
83374 ATTACGT-TTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAA
130 A-CAAGTCTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAACTTATAA
** * *
83438 TTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCGCATGACTTTGAATCATGTGCT-AGTGGGTTCGA
194 TTGTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGACTTTGAACCATGTGCTCA-TGGGTTCAA
* * *
83502 TTCCCA-AAGACGGTGGAGGTTG-AGG-GATATCCATTGTTAATAATATAGATATGTATGATTGT
258 TTCCCACAA-ACAGTGGAGG-TGAAGGTG-TATCCATCGTT-ATAATAGAG-T-TGTATGATTGT
*
83564 TTAGATTTATATTTATATTAAAATAGTTAAAATGTAAATTGTTTTCATAATTTTCTAAACCTTGT
317 TTAGATTTATATTTATATTAAAATAGTTAAAATG--AATT-TTTT-ATAATTTTCTAAACCCTGT
* * * *
83629 TGGTTGTGTGCATGTCATTTAAACTTATTTTCTAAGATTTTATTCCAATAGATATGCGTTGTCAT
378 TGGTAGTGTGCATGGCATTTAAACTTATTGTCTAAGATTTTATTCCAATAGATATGCATTGTCAT
* * *
83694 GACGGTAATTGTCGATAAGTTGTTTAGCTTCTATATTTCTCTGGAGCGATAGTAAGGGTTTCATA
443 GACGGTAATTGTCGATAAGTTATGTAGCTTCTATATTTCTCTGGAGCGATAGTAAGGGGTTCATA
*
83759 GTGTTACTTTTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAA
508 GTGTTACTTTTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATACTGAAA
*
83824 CGATTAGCTTCTTTTAAGTGTTCCAAGT-TTTTTCGTGGAAAATTAGGTTTATAGATTCATTGTT
573 AGATTAGCTTCTTTTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATAGATTCATTGTT
* *
83888 TTTCAAGTTAAAAGTGTTCTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAG
638 TTTCAAGCTAAAAGTGTTCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAG
* * * * *
83953 AAAGAGCTTTGAAAATA-TTTTTCTATCAAATTGTTATGTTAC-TTAAATAGTTTGATACTGCTT
703 AAAGAACTTTAAAAATATTTTTTCTATCAAATTGTTATGTTACTTTAAACAGATAGATACTGCTT
* *
84016 ACAAAGAATATTATGAAAAGTATAAATTAAGAAAATATAATTGATGTTACAAAGTGAGAAAATAA
768 ACAAAGAATATTATGAAAAATATAAATTAAGAAAATATAATTGATGGTACAAAGTGAGAAAATAA
84081 GTTACCTTAAATTATTTTTCTGAGTATATATATATATATATCATAAACTATGAGGCTAAAATACA
833 GTTACCTTAAATTATTTTTCTGAG--TATATATATATATATCATAAACTATGAGGCTAAAATACA
*
84146 AAAACAATTCTTTCAACATTTCTAAAATAA-TTTTTAGGAGATA
896 AAAACAATTCTTCCAACATTTCTAAAATAATTTTTTA-GAGATA
* *
84189 TATTTTTATTCAAAAAGTCATCGGTTAACCTTGTTCTTTACATCATTTAATCCCAAAT
1 TATTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAAT
84247 ATTAGTTTAC
Statistics
Matches: 897, Mismatches: 87, Indels: 28
0.89 0.09 0.03
Matches are distributed among these distances:
936 4 0.00
937 230 0.26
938 32 0.04
939 1 0.00
940 42 0.05
941 100 0.11
942 33 0.04
943 183 0.20
944 272 0.30
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (938 bp):
TATTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAAT
TAGCATCAAATTTTGTGTGTGAAAAAATAGAGAAATATTAGTTTACTTGTATCACAATTTCTAAA
CAAGTCTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAACTTATAATT
GTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGACTTTGAACCATGTGCTCATGGGTTCAATTC
CCACAAACAGTGGAGGTGAAGGTGTATCCATCGTTATAATAGAGTTGTATGATTGTTTAGATTTA
TATTTATATTAAAATAGTTAAAATGAATTTTTTATAATTTTCTAAACCCTGTTGGTAGTGTGCAT
GGCATTTAAACTTATTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGACGGTAATTGTC
GATAAGTTATGTAGCTTCTATATTTCTCTGGAGCGATAGTAAGGGGTTCATAGTGTTACTTTTGT
TAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATACTGAAAAGATTAGCTTCTT
TTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATAGATTCATTGTTTTTCAAGCTAAAA
GTGTTCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAACTTTAAA
AATATTTTTTCTATCAAATTGTTATGTTACTTTAAACAGATAGATACTGCTTACAAAGAATATTA
TGAAAAATATAAATTAAGAAAATATAATTGATGGTACAAAGTGAGAAAATAAGTTACCTTAAATT
ATTTTTCTGAGTATATATATATATATCATAAACTATGAGGCTAAAATACAAAAACAATTCTTCCA
ACATTTCTAAAATAATTTTTTAGAGATA
Found at i:85001 original size:2 final size:2
Alignment explanation
Indices: 84994--85018 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84984 TTAAATTATT
84994 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
85019 CATAAAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87251 original size:939 final size:930
Alignment explanation
Indices: 85423--88901 Score: 4399
Period size: 939 Copynumber: 3.8 Consensus size: 930
85413 CCAAGTTATC
*
85423 GGTA-TTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTATTTCATTTAATCCCAAATGTAC
1 GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTAC
* * * * * *
85487 AATTAGCTTCAATTTTTGTGTGTGAAAAAATATAGAAATATTAGTTTACTTGTATCACATTTTCT
66 AATTAGCTTCAAATTTT-TGTGTGAAAAAATAGATAAATATTAGTTTACCT-TATCTCAATTTCT
* * * * * **
85552 AAA-CAATTCTTTATAGATTTTAAATATGGATAAATATTTACGATT-CGTGTAAAATTAAGCTTA
129 AAATTAAGT-TTTATAGATTATAAATATGGATAAATATTTACG-TTACATGTAAAATCAAATTTA
** * * *
85615 TAATTGTTAGTTGTCTTAGCTCAACTGGTAGAGCGCATGGCTTTTAACCATGTGGTCA-TGGGTT
192 TAATTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCACATGGCTTTGAATCATGTGGT-AGTGGGTT
* * ** *
85679 CAATTCCCACAA-ACAGTGGATG-TGAAGGTGTATCCATCGTTATAATGGAG-T-TGTATGATTT
256 CAATTCCCA-AAGACAGTGGAGGTTG-AGGTGTATCCATTGTTATAATATAGATATGTATGATTG
* * *
85740 TTTAGATTTATATTTATCTTAAAATAGTTAAGATGGATTTTTTTTAGTTTTCTAAACCCTGTTGG
319 TTTAGATTTATATTTATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGG
* *
85805 TAGTGTGCATGGCATTTGAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCGTGAG
384 TAGTGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGAG
* * *
85870 GGTAATTGTCGATAAGTTATGTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTG
449 GGTAATTATCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTG
* * * *
85935 TTGCTTTTGTTAATCTGTACAATTTTATTTTATTTCCTGTGTGTAACGATTACATACTGAAAAGA
514 TTGCTTCTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGA
*
86000 TTAGCTTCTTTTAAGTGTTCCAAGTGTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTT
579 TTAG-TTCTTTTAAGTGTTCCAAGT-TTTTTCGTGGAAAATTAGGTTTATATATTCATTGTTTTT
* * *
86065 CAAGCTAAAAGTGTTGTTCAGATGTTCCTTTAAAAGAAGCGCTTCAAAAGTAGTACTTTTAGAAA
642 CAAGTTAAAAGTGTTGTT-AGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAA
* * * *
86130 GAACTTTAAAAATATTTTTTGTATCAAATTGTTATGTTACTTTAAACAGATAGATATTGTTTACA
706 GAGCTTT-GAAATATTTTTTCTATCAAA-TGTTATGTTACTTTAAACAG-TTG--ATTGTTTACA
* *
86195 AAGTATATTATGAAAAATATATAAATTTAGAAAATATAATTGATGGTAGAAAGTGAGAAAATAAG
766 AAGTATATTATG--AAA-ATATAAATTTAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAG
*
86260 TTACCTTAAATTATTTTTCTGAG--TGTATATATATATATCATAAAGTATGAGGCTAAAATACGA
828 TTACCTTAAATTATTTTTCTGAGTTTATATATATATATATCATAAAGTATGAGGCTAAAATACGA
* * *
86323 AAACAATTCTTCCAACATTTCTTAAATAATTTTTTAGA
893 AAACAATTCTTTCAACATTTCTAAAATAATTTTTTGGA
* * *
86361 GGTATTTTTTCTTCAAAAAGTTATCAGTTAACCTTGTTCTTTACTTCATTTAATCCAAAATGTAC
1 GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTAC
* *
86426 AATTAGCATCAAATTTTGTGTGTGAAAAACATAGATAAATATTAGTTTACTTTATCTCAATTTCT
66 AATTAGCTTCAAATTTT-TGTGTGAAAAA-ATAGATAAATATTAGTTTACCTTATCTCAATTTCT
*
86491 AAATTACGTTTTATAGATTATAAATATGGATAAATATTTACGTTACATGTAAAATCAAATTTATA
129 AAATTAAGTTTTATAGATTATAAATATGGATAAATATTTACGTTACATGTAAAATCAAATTTATA
* * * *
86556 ATTTTTAGTTGTCTTAGCTCTGCTGGTAGAGCGCATGACTTTGAATCATGTGGTAGTGGGTTCGA
194 ATTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCACATGGCTTTGAATCATGTGGTAGTGGGTTCAA
*
86621 TTCCCAAAGACAGTGGAGGTTGAGGTGTATCCATTATTAATAATATAGATATGTATGATTGTTTA
259 TTCCCAAAGACAGTGGAGGTTGAGGTGTATCCATTGTT-ATAATATAGATATGTATGATTGTTTA
* *
86686 GATTTATATTTATATTAAAATAGTTAAGATGTAAATTGTTTTTATAGTTTTCAAAACCTTGTTGG
323 GATTTATATTTATCTTAAAATAGTTAAGATGT-AA-T-TTTTT-TAGTTTTCTAAACCTTGTTGG
* * *
86751 TTGTGTGCATGTCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGAC
384 TAGTGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGAG
* * *
86816 GTTAATTATCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGTGATAGTAAGGGTTTCATAGTG
449 GGTAATTATCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTG
* * *
86881 TTACTTTTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAACGA
514 TTGCTTCTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGA
*
86946 TTAGCTTCTTTTAAGTGTTCCAAGTTTTTTCGTGGAAAATTAGGTTTATAGATTCATTGTTTTTC
579 TTAG-TTCTTTTAAGTGTTCCAAGTTTTTTCGTGGAAAATTAGGTTTATATATTCATTGTTTTTC
*
87011 AAGTTAAAAGTGTTCTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAG
643 AAGTTAAAAGTGTTGTT-AGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAG
* *
87076 AGCTTTGAAATA-TTTTTCTATCAAATGTTATGTTAC-TT-AATAGTTGATTGTTTACAAAGAAT
707 AGCTTTGAAATATTTTTTCTATCAAATGTTATGTTACTTTAAACAGTTGATTGTTTACAAAGTAT
*
87138 ATTATGAAAAGTATAAATTAAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAGTTACCTTA
772 ATTATGAAAA-TATAAATTTAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAGTTACCTTA
* *
87203 AATTATTTTTCTGAGTATATATATATATATATATCATAAAGTATGAGGCTAAAGTATGAAAACAA
836 AATTATTTTTCTGAGT-T-TATATATATATATATCATAAAGTATGAGGCTAAAATACGAAAACAA
*
87268 TTCTTTCAACATTTCTAAAATAATTTTTGGGA
899 TTCTTTCAACATTTCTAAAATAATTTTTTGGA
*
87300 GGTATTTTTTTATTCAAAAAGTCATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTA
1 GGTA-TTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTA
* * *
87365 CAATTAGCTTCAAAATTTTTGTGTGAATAAATAGATGAATATTAGTTTACCTTATCTCATTTTCT
65 CAATTAGCTTC-AAATTTTTGTGTGAAAAAATAGATAAATATTAGTTTACCTTATCTCAATTTCT
* *
87430 TAATTAATTTTTATAGA-TATAAATATGGATAAA-ATTTA--TTACATGTAAAATCAAATTTATA
129 AAATTAAGTTTTATAGATTATAAATATGGATAAATATTTACGTTACATGTAAAATCAAATTTATA
* * * ** * *
87491 ACTGTTAGTTGTCTTAGTTATGCTATTAGAGCACATGGCTTTGAATCATGTGGTTGTGTGTTCAA
194 ATTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCACATGGCTTTGAATCATGTGGTAGTGGGTTCAA
** * * * *
87556 TTCCCACTGACAGTGGAGGTTGAAGTGTATTCATTGTTAGAATATAGACATGTATGATTGTTTAG
259 TTCCCAAAGACAGTGGAGGTTGAGGTGTATCCATTGTTATAATATAGATATGTATGATTGTTTAG
* *
87621 ATTTATATTTTATTTTAAAATTGTTAAGATGTAATTTTTTTAGTTTTCTAAACC-TG-T-GTA--
324 ATTTATA-TTTATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGGTAGT
*
87681 GTG--TGGCA-TTAAAC-TG-AGTCTAAGA-TTTA---CAATAGATATGCATTGTCATGAGGGTA
388 GTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGAGGGTA
* *** *
87737 ATTATCGATAAGCTGTTTATCTTCTATATTTCTCCAATGCAATAGTAAGGGGTTCATAGTGTTGC
453 ATTATCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGC
* *
87802 TTCTGTTAACCTGTACAA-TTCATTTTATTTCATGTGTGTAACGA-TACATGTTGAAAAGATTAG
518 TTCTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGATTAG
*
87865 --CTTTTAAGTGTTCCTAA-TTTTTT-GATGGAAAATTAGGATTA-A-ATTCATTG-TTTTCAAG
583 TTCTTTTAAGTGTTCC-AAGTTTTTTCG-TGGAAAATTAGGTTTATATATTCATTGTTTTTCAAG
* * *
87923 TTAAAAATGTTGTT-CATGTGCCTTTAAAAGAAGCTCTTC-AAAGAAGTACTTTTAGAAAGAGCT
646 TTAAAAGTGTTGTTAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCT
* * * * * *
87986 TTGAAAATATTTTTTCTATCCAATTGTTATGTCACTTTCAAGAGTTGGTATGTTTACAAATTATA
711 TTG-AAATATTTTTTCTAT-CAAATGTTATGTTACTTTAAACAGTTGAT-TGTTTACAAAGTATA
* * *
88051 TTATGAAAAAATTGAAATTTAGAAAATATAATTGATTTTAGTAAA-TGAGAAAATAAGTTACCTT
773 TTATGAAAATA-T-AAATTTAGAAAATATAATTGATGTTA-CAAAGTGAGAAAATAAGTTACCTT
* *
88115 -AA--A---TT-T---TTTA-A-GTATATATATCATAAAGTATGAGGCTAAAATACGAAAAAAAA
835 AAATTATTTTTCTGAGTTTATATATATATATATCATAAAGTATGAGGCTAAAATACG--AAAACA
*
88168 ATTCTTTCACCATTTCTAAAAT-ATTTTTTGGGA
898 ATTCTTTCAACATTTCTAAAATAATTTTTT-GGA
* *
88201 TGTATTTTTTATTCAAAAAGTTATCGATTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTAC
1 GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTAC
* *
88266 AATTAGCTTCAAA-TATT-TGCGAAAAAATAGATAAATATTAGTTTACCTTATCTC-ATTTCTAA
66 AATTAGCTTCAAATTTTTGTGTGAAAAAATAGATAAATATTAGTTTACCTTATCTCAATTTCTAA
* * ** *
88328 ATTATG-TTTATAGATTATAAATATGGATAAATATTTATGAGACATGTAAAATAAAATTTTATAA
131 ATTAAGTTTTATAGATTATAAATATGGATAAATATTTACGTTACATGTAAAATCAAA-TTTATAA
* * **
88392 TTGTTAGTTGTTTTAGCTCTGCTGGTAGAGCACATGGCTTTGAATCAAGTGGTAGTGGGTTTGAT
195 TTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCACATGGCTTTGAATCATGTGGTAGTGGGTTCAAT
* *
88457 TCCCACAGA-AGGTGAAGGTTGAGGTGTATCCATTGTTATAATATATAGATATGTATGATTGTTT
260 TCCCAAAGACA-GTGGAGGTTGAGGTGTATCCATTGTTAT-A-ATATAGATATGTATGATTGTTT
* * * * * * *
88521 AGGTTTATA-TTGTCTTAAAATAGCTAGGATGTAATTTTTTTAGTTTTCTAATCCTTCTTGGTTG
322 AGATTTATATTTATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGGTAG
* * * * * * *
88585 TGTGCATGGCTTTTAAACATATTGTCTAGGATTTTATTTCAATAGATATGCGTTGTCGA-AAGGG
387 TGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTC-ATGAGGG
* * * *
88649 AAATT-GCGAATAAGTTGTTTATCTTCTATATTTCTGTGGAGCGATAGTAAGGGGTTCATAGTGT
451 TAATTATCG-ATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGT
* * * * ** * * **
88713 TGCTTCTCTT-ACCTTGTAGAATTCCATTTTAATTATTTTATGTAACGGCTACATGCT-----G-
515 TGCTTCTGTTAACC-TGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGA
* *
88771 --A-TTCTTTTAAGTGTTCCTAGTTTTTTCGTGGAAAATTAGG-TTATTTATTCATTGTTTTTCA
579 TTAGTTCTTTTAAGTGTTCCAAGTTTTTTCGTGGAAAATTAGGTTTATATATTCATTGTTTTTCA
* * * *
88832 AGTTAAAATTGTTGTTAAGAAGTGCCTTTAAAAGAAGCGCTTTAAAAGAAATACTTTTAGAAAGA
644 AGTTAAAAGTGTTGTT-AGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGA
88897 GCTTT
708 GCTTT
88902 TGTAACACCC
Statistics
Matches: 2249, Mismatches: 219, Indels: 170
0.85 0.08 0.06
Matches are distributed among these distances:
895 8 0.00
896 26 0.01
897 39 0.02
898 3 0.00
899 49 0.02
900 208 0.09
901 36 0.02
902 31 0.01
903 3 0.00
905 3 0.00
906 28 0.01
907 34 0.02
908 20 0.01
909 66 0.03
910 27 0.01
911 37 0.02
912 60 0.03
913 71 0.03
914 116 0.05
915 37 0.02
916 32 0.01
917 99 0.04
920 4 0.00
921 8 0.00
922 2 0.00
923 6 0.00
924 4 0.00
926 3 0.00
928 2 0.00
929 1 0.00
930 2 0.00
931 13 0.01
932 5 0.00
933 1 0.00
934 35 0.02
935 201 0.09
937 26 0.01
938 25 0.01
939 353 0.16
940 111 0.05
941 10 0.00
942 54 0.02
943 13 0.01
944 6 0.00
945 108 0.05
946 223 0.10
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (930 bp):
GGTATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTAC
AATTAGCTTCAAATTTTTGTGTGAAAAAATAGATAAATATTAGTTTACCTTATCTCAATTTCTAA
ATTAAGTTTTATAGATTATAAATATGGATAAATATTTACGTTACATGTAAAATCAAATTTATAAT
TGTTAGTTGTCTTAGCTCTGCTGGTAGAGCACATGGCTTTGAATCATGTGGTAGTGGGTTCAATT
CCCAAAGACAGTGGAGGTTGAGGTGTATCCATTGTTATAATATAGATATGTATGATTGTTTAGAT
TTATATTTATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTG
CATGGCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCATTGTCATGAGGGTAATT
ATCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTC
TGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGATTAGTTC
TTTTAAGTGTTCCAAGTTTTTTCGTGGAAAATTAGGTTTATATATTCATTGTTTTTCAAGTTAAA
AGTGTTGTTAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAA
ATATTTTTTCTATCAAATGTTATGTTACTTTAAACAGTTGATTGTTTACAAAGTATATTATGAAA
ATATAAATTTAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAGTTACCTTAAATTATTTTT
CTGAGTTTATATATATATATATCATAAAGTATGAGGCTAAAATACGAAAACAATTCTTTCAACAT
TTCTAAAATAATTTTTTGGA
Found at i:92169 original size:24 final size:24
Alignment explanation
Indices: 92142--92257 Score: 137
Period size: 24 Copynumber: 4.8 Consensus size: 24
92132 TTCGATTTGA
*
92142 ATTCTGATCTGATACTTGACAAGG
1 ATTCTGATCTGATACTTGACATGG
92166 ATTCTGATCTGATA-TCTGACATGG
1 ATTCTGATCTGATACT-TGACATGG
* *
92190 ATTCTGATCTGACACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
* * *
92214 ATTCTGATCTGTTACTTGACCT-A
1 ATTCTGATCTGATACTTGACATGG
*
92237 ATTTCTGATATGATACTTGAC
1 A-TTCTGATCTGATACTTGAC
92258 CTGATTTATA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
23 2 0.03
24 77 0.96
25 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:92258 original size:24 final size:24
Alignment explanation
Indices: 92215--92264 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
92205 TTGACTTGGA
* *
92215 TTCTGATCTGTTACTTGACCTAAT
1 TTCTGATATGATACTTGACCTAAT
*
92239 TTCTGATATGATACTTGACCTGAT
1 TTCTGATATGATACTTGACCTAAT
92263 TT
1 TT
92265 ATATTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (24 bp):
TTCTGATATGATACTTGACCTAAT
Found at i:96791 original size:24 final size:24
Alignment explanation
Indices: 96764--96879 Score: 137
Period size: 24 Copynumber: 4.8 Consensus size: 24
96754 TTCGATTTGA
*
96764 ATTCTGATCTGATACTTGACAAGG
1 ATTCTGATCTGATACTTGACATGG
96788 ATTCTGATCTGATA-TCTGACATGG
1 ATTCTGATCTGATACT-TGACATGG
* *
96812 ATTCTGATCTGACACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
* * *
96836 ATTCTGATCTGTTACTTGACCT-A
1 ATTCTGATCTGATACTTGACATGG
*
96859 ATTTCTGATATGATACTTGAC
1 A-TTCTGATCTGATACTTGAC
96880 CTGATTTATA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
23 2 0.03
24 77 0.96
25 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:96880 original size:24 final size:24
Alignment explanation
Indices: 96837--96886 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
96827 TTGACTTGGA
* *
96837 TTCTGATCTGTTACTTGACCTAAT
1 TTCTGATATGATACTTGACCTAAT
*
96861 TTCTGATATGATACTTGACCTGAT
1 TTCTGATATGATACTTGACCTAAT
96885 TT
1 TT
96887 ATATTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (24 bp):
TTCTGATATGATACTTGACCTAAT
Found at i:98710 original size:2 final size:2
Alignment explanation
Indices: 98703--98736 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
98693 ATTTTCCTGA
98703 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98737 CATAAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100722 original size:2 final size:2
Alignment explanation
Indices: 100709--100763 Score: 58
Period size: 2 Copynumber: 28.0 Consensus size: 2
100699 TTTTTATGAG
* * * * *
100709 TA TA TA TG TA TA TA TA AA TA TG TA TA TG TA GA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100750 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
100764 CATAAAGTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (2 bp):
TA
Found at i:102338 original size:932 final size:911
Alignment explanation
Indices: 100742--102530 Score: 2416
Period size: 932 Copynumber: 1.9 Consensus size: 911
100732 ATATGTAGAA
* *
100742 TATATATATATATATATATATACATAAAGTATGAGGATAAAATATGAAAACAATTCTTTCAACAT
1 TATATATATATATATATATATACATAAAGTATGAGGATAAAAGATGAAAACAATTCTTTCAACAA
* * * *
100807 TTTTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGATTAATCTTGTTCTTTATT
66 TTCTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAATTATAGATTAACCTTGTTCTTTATT
* * *
100872 TCATTTAATCCCAAATGTATAATTAGCATCAAATATTTTGTGTGAAAAACATAGAGAAATATTAG
131 TCATTTAATCCCAAACGTACAATTAGCATCAAATATTTTGCGTGAAAAACATAGAGAAATATTAG
* * * * * * *
100937 TTTACTTGTATCACATTTTCTAAACAATACTTTATAGATTTCAAATATCAGTTTATAATTGATAG
196 TTTACTTCTATCACATTTTCAAAAAAATACTTTATACATGTAAAATATAAGTTTATAATTGATAG
* * * * * * *
101002 TTGTCTTAGCTCAGCTGGTAGATCGCATGGCTTTTAACCATGTGGTTGTGGGTTCGATTCCCATA
261 ATGTCTTAGCTCAACTGATAGAGCGCATGGCTCTTAACCATGTGGTCGTGGGTTCGATTCCCACA
* * *
101067 GACAGCGGAGGTTGAAGGTGTATCCGTTGTTATATTAGATTTGTATGATTGTTTAGATTTATATT
326 GACAGCGGAGGTTGAAGGTGTAT-CATTGTTATAATAGATTTGTATGATTGTTTAAATTTATATT
* ** * *
101132 ATCTTAAAATAGATAAGATGGAATTTTTTTTTTTGTTTTCTAATCCTTGTTGGTAGTGTGCATGG
390 ATCTTAAAATAGATAAGATGGAATTTTTTTTTTTGTTTTCTAAACCTTACTGGTAATGTGCATGA
* * * **
101197 CATTTTAACTTGTTGTCTAAGATTTTATTACAATAGATATGCGTTGTCGTGAGGGTAATTGTCGA
455 CATTTAAACTTGTTCTCTAAGATTTTATTACAATAGA-ATGAGTTGTCGAAAGGGTAATTGTCGA
* *
101262 TAAGTTTTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTGCAAAGTGTTGCTTCTGTTA
519 TAAGTTTTTTATCTTCTATATTTCTCTAGTGCAATAGTAAGGGGTGCAAAGTGTTGCTTCTGTTA
* *
101327 ACATGTACAATTTCATTTTATTTCCTGTGTGTGACGAATACATGCCGAAAAGATTAACTTCTTTT
584 ACATATACAATTTCATTTTATTTCCTGTGTGTAACGAATACATGCCGAAAAGATTAACTTCTTTT
101392 AAGTGTTCCAAG-TTTTTCATGGAAAATTAGGTTTATCTATTCATTGTTTTTCAAGTAAAAAGTG
649 AAGTGTTCCAAGTTTTTTCATGGAAAATTAGGTTTATCTATTCA-T-TTTTTCAAGTAAAAAGTG
* * * *
101456 TTGTTGAGATGTGCCTTTAAATGAAGCGCTTCAAAAGACGTACTTTTAGAAAGAGCTTTAAAAAT
712 TTGTTGAGATGTGCCTTGAAAAGAAACGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAA-
* * *
101521 ATTTTTTCTATCAAGTTGTTATGTTACTTTAAATAGTTTGATAAGT-TTTACAAAGTATATTATG
776 A--TATTCTATCAAATTGTTATGTTACTTTAAATAGTTTGAT-AGTGTTTACAAAGTATAATATG
101585 AAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTAT
838 AAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTAT
101650 TTTTCTGAG
903 TTTTCTGAG
* *
101659 TATATATATATATATATATAT-CATAAAGTATGATGCT-AAAGATGAAAACAATTCTTTCAACAA
1 TATATATATATATATATATATACATAAAGTATGAGGATAAAAGATGAAAACAATTCTTTCAACAA
* *
101722 TTCTAAAATATTTTTTTGGAGTTATTTTTTATTCAAAAAATTATA-AGTTAACCTTGTTCTTTAT
66 TTCTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAATTATAGA-TTAACCTTGTTCTTTAT
* * * * *
101786 TTCATTTAATCCCAAACGTACAATTAGCTTCAATTTTTTTGCGTGAGAAACATAGTGAAATATTA
130 TTCATTTAATCCCAAACGTACAATTAGCATCAAATATTTTGCGTGAAAAACATAGAGAAATATTA
*
101851 TGTATCTCATTTTCTAAACAATACTTTACAGATTTT-AAATTTGGATAAATA-TTTACGATACAT
195 -GT-T-T-A-CTTCT-----AT-C---AC--ATTTTCAAA-----A-AAATACTTT---ATACAT
* *
101914 GTAAAAT-TAAGTTTATAATTGTTAGATGTCTTAGCTCAACTGATAGAGCGGATGGCTCTTAACC
235 GTAAAATATAAGTTTATAATTGATAGATGTCTTAGCTCAACTGATAGAGCGCATGGCTCTTAACC
*
101978 ATGTGGTCGTGGGTTCGATTCCCACAGACAGCTGAGGTTGAAGGTGTAT-ATTGTTATAATAGAT
300 ATGTGGTCGTGGGTTCGATTCCCACAGACAGCGGAGGTTGAAGGTGTATCATTGTTATAATAGAT
* *
102042 TTGTATGATTGTTTAAATTTATATTATCTT-AAATAGTTAAGATGTAATTTTTTTTTTTGTTTTC
365 TTGTATGATTGTTTAAATTTATATTATCTTAAAATAGATAAGATGGAATTTTTTTTTTTGTTTTC
102106 TAAACCTTACTGGTAATGTGCATGACATTTAAACTTGTTCTCTAAGATTTTATT-CACATAG-AT
430 TAAACCTTACTGGTAATGTGCATGACATTTAAACTTGTTCTCTAAGATTTTATTACA-ATAGAAT
* *
102169 GAGTTGTTGAAAGGGTAATTGTTGATAAGTTTTTTATCTTCTATATTTCTCTAGTGCAATAGTAA
494 GAGTTGTCGAAAGGGTAATTGTCGATAAGTTTTTTATCTTCTATATTTCTCTAGTGCAATAGTAA
* * * * **
102234 GGGGTTCATAGTGTTGCTTCTGTTAACCTATACAATTTCATTTTATTTCTTGTGTGTAACGGCTA
559 GGGGTGCAAAGTGTTGCTTCTGTTAACATATACAATTTCATTTTATTTCCTGTGTGTAACGAATA
* * *
102299 CATGCTGAAAATATTAGA-TTCTTTTAAGTGTTCCAAGTTTTTTTTCTTGGAAAATTAGGTTTAT
624 CATGCCGAAAAGATTA-ACTTCTTTTAAGTGTTCCAAG--TTTTTTCATGGAAAATTAGGTTTAT
* * *
102363 TTATTCATTTTTTCAAGTTAAAAGTGTTGTTGAGATGTTCCTTGAAAAGAAACGCTTCAAAAGAA
686 CTATTCATTTTTTCAAGTAAAAAGTGTTGTTGAGATGTGCCTTGAAAAGAAACGCTTCAAAAGAA
** *
102428 GTTTTTTTAGAAGGAGCTTTAAAAAATATTCTATCAAATTGTTATGTTACTTTAAATAGTTTGAT
751 GTACTTTTAGAAAGAGCTTTAAAAAATATTCTATCAAATTGTTATGTTACTTTAAATAGTTTGAT
**
102493 CTTGTTTACAAAGTATAATATGAAAAATATAAATTTAG
816 AGTGTTTACAAAGTATAATATGAAAAATATAAATTTAG
102531 CATCAAATTA
Statistics
Matches: 759, Mismatches: 81, Indels: 51
0.85 0.09 0.06
Matches are distributed among these distances:
914 1 0.00
915 137 0.18
916 16 0.02
917 22 0.03
918 1 0.00
919 1 0.00
920 3 0.00
925 2 0.00
926 1 0.00
929 3 0.00
930 72 0.09
931 5 0.01
932 151 0.20
933 76 0.10
934 84 0.11
935 75 0.10
936 4 0.01
937 95 0.13
938 10 0.01
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (911 bp):
TATATATATATATATATATATACATAAAGTATGAGGATAAAAGATGAAAACAATTCTTTCAACAA
TTCTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAATTATAGATTAACCTTGTTCTTTATT
TCATTTAATCCCAAACGTACAATTAGCATCAAATATTTTGCGTGAAAAACATAGAGAAATATTAG
TTTACTTCTATCACATTTTCAAAAAAATACTTTATACATGTAAAATATAAGTTTATAATTGATAG
ATGTCTTAGCTCAACTGATAGAGCGCATGGCTCTTAACCATGTGGTCGTGGGTTCGATTCCCACA
GACAGCGGAGGTTGAAGGTGTATCATTGTTATAATAGATTTGTATGATTGTTTAAATTTATATTA
TCTTAAAATAGATAAGATGGAATTTTTTTTTTTGTTTTCTAAACCTTACTGGTAATGTGCATGAC
ATTTAAACTTGTTCTCTAAGATTTTATTACAATAGAATGAGTTGTCGAAAGGGTAATTGTCGATA
AGTTTTTTATCTTCTATATTTCTCTAGTGCAATAGTAAGGGGTGCAAAGTGTTGCTTCTGTTAAC
ATATACAATTTCATTTTATTTCCTGTGTGTAACGAATACATGCCGAAAAGATTAACTTCTTTTAA
GTGTTCCAAGTTTTTTCATGGAAAATTAGGTTTATCTATTCATTTTTTCAAGTAAAAAGTGTTGT
TGAGATGTGCCTTGAAAAGAAACGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAAATATT
CTATCAAATTGTTATGTTACTTTAAATAGTTTGATAGTGTTTACAAAGTATAATATGAAAAATAT
AAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTCTGA
G
Found at i:107259 original size:925 final size:929
Alignment explanation
Indices: 104252--108046 Score: 4769
Period size: 947 Copynumber: 4.1 Consensus size: 929
104242 AAGTTATCAG
* ** *
104252 TATTTTTTATTCAAAAAGTTATGGGTTAACCTTGTTCTTTATTT-GATTTAATCCTAAATGTACA
1 TATTTTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCG-TTTAATCCCAAATGTACA
*
104316 ATTAGCTTCAA-TTTTTGTGTGAAAAACATAGAGAAATATTAGTTTACATGTATCTCATTTTCTA
65 ATTAGCTTCAATTTTTTGTGTGAAAAACATAGAGAAATATTAGTTTACCTGTATCTCATTTTCTA
* *
104380 AACAATACTTTATAGATTTTAAATATGGATAAATATTTACGATTCGTGTAAAATTAAGTTTATAA
130 AACAATACTTTATAGATTTTAAATATGGATAAATATTTACAATACGTGTAAAATTAAGTTTATAA
* *
104445 TTGTTAGTTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGTTCGAT
195 TTGTTAGTTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCAAT
* * *
104510 TCCCACAGA-TGGTGGAGGTT-AAGGTGTATCCATTGTTATAATATAGATATGTATATGATTATT
260 TCCCACAGACAGCT-GAGGTTGAAGGTGTATCCATTGTTAT-A-ATAGAT-T-TATATGATTGTT
* * * * * *** * *
104573 TAGGTTTATATTGTCTTAAAATAGCTAGGATGTAA-TTTTTTAGTTTTGTATTTCTTCTTTGTAG
320 TAGATTTATATTATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGGTAG
* * *
104637 TGTGCATGGCATTTAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGTGTTATTGAAAGGGA
385 TGTGCATGGCA--TAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCGTTGTTGAAAGGGT
* * * *
104702 AATTGTCGATAAGTTGTTTATCTTCTATATTTCTCCGTTGCGATAGTAAGGGGCTCATAGTGTTG
448 AATTGTCGATAACTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTG
* * * * *
104767 CTTCTCTTACCCTGTAGAAGTCCATTTTATTTATTTTGTGGAACGATTACATGCTAAAAAGATTA
513 CTTCTCTTAACCTGTACAATTCCATTTTATTTATTGTGTGTAACGATTACATGCTAAAAAGATTA
* *
104832 GCTTATTTTAAGTGTTCCAAGTTTTTTCGTGGAAAATTGGTTTA--T-TTATTGTTTTTTAAGTT
578 GCTTATTTTAAGTGTTCCAAGTTTTTTCATGGAAAATTGGTTTATTTATTATTGTTTTTCAAGTT
* * *
104894 AAAGGTGTTTTTGAGACGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCTT
643 AAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCTT
* *
104959 TAAAAATATTTTTTCTAACAAATTATTATGTTACTTTAAATTATTTGATATTTTTTACAAAGTA-
708 TAAAAATA-TTTTTCTAACAAATTGTTATGTTACTTTAAATTATTTGATATTGTTTACAAAGTAT
** ** * * * * *
105023 AATTATGAAAAATATAAATTTAGATATTTTTTATTTTACT-TTAAGGGGTTCATAGTGTTGCTTC
772 AA-TATGAAAAATATAAATTTAGA-A-AATAGAATTGA-TGTT-A---G---AAAGTG-AG---A
*** * ** * * * * *
105087 TGTTAAGATGTACAATTTCATT-TTATTTCCTGTGTGTAACGATTACATGTCGA-AAAG-ATTA-
822 AAATAAG-T-TAC-CTTAAATTATT-TTT-CTGAGTGT-A-TA-TATATATC-ATAAAGTATGAT
* * *
105148 ACTGAAATATGAAAACAATTCTTTCAACATTTCTAAAATAA-TTTTTGG-GT
878 GCTAAAAGATGAAAACAATTCTTTCAACATTTCTAAAATAATTTTTTGGAGT
* * * *
105198 GTAATTTTTATTCAAAAAGTTATAAGTTAACCTTGTTCTTTATTTCATTTAATGCC-AATGTACA
1 -TATTTTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCGTTTAATCCCAAATGTACA
*
105262 ATTAGCTTCAAATTTTGTGTGTGAAAAACATAGAGAAATATTAGTTTACCTGTATCTCATTTTCT
65 ATTAGCTTC-AATTTTTTGTGTGAAAAACATAGAGAAATATTAGTTTACCTGTATCTCATTTTCT
*** * * *
105327 AGTTAATGCTTTATAGATTTTAAATATGGATAAATATTTACAATATGTGTAAAA-TAAGTTTAAA
129 AAACAATACTTTATAGATTTTAAATATGGATAAATATTTACAATACGTGTAAAATTAAGTTTATA
* * * * * *
105391 ATTGTTAGTTTTCTTAGCTCAACTAGTAGAGCGCATTGTTTTTAACCATGTGGTCATGGGTTCAA
194 ATTGTTAGTTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCAA
* * * * *
105456 TTCCCATAGACAGTTGAGGTTGAAGTTGTATCCATCGTTATAATAGATATATATGATTGTTTAGA
259 TTCCCACAGACAGCTGAGGTTGAAGGTGTATCCATTGTTATAATAGATTTATATGATTGTTTAGA
*
105521 TTTATATTTATCTTAAAATAGTTAAGATGTATTTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTG
324 TTTATA-TTATCTTAAAATAGTTAAGATGTA-ATTTTTTTAGTTTTCTAAACCTTGTTGGTAGTG
* * * * *
105586 TGCATGGCATTTAAACATGTTGTCAAAGATTTTATTCCAATAGAAATGCGTTGTCGAAAGGGCAA
387 TGCATGGCA--TAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCGTTGTTGAAAGGGTAA
* * *
105651 TTGTCGATAAGTTGTTTATCTTCTATATTTCTCCGGTGCAATAGTAAGGGGTTCATAGTGTTGCT
450 TTGTCGATAACTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCT
* * *
105716 TCTCTTACCCTGTAGAATTCCATTTTATTTATTTTGTGTAACGATTACATGCTAAAAAGATTAGC
515 TCTCTTAACCTGTACAATTCCATTTTATTTATTGTGTGTAACGATTACATGCTAAAAAGATTAGC
*
105781 TTATTTTAAGTGTTCCAAGTTTTTTCATGTAAAATTGGTTTATTTATATATTGTTTTTCAAGTTA
580 TTATTTTAAGTGTTCCAAGTTTTTTCATGGAAAATTGGTTTATTTAT-TATTGTTTTTCAAGTTA
* * * *
105846 AAGGTGTTTTTGAGATCTTCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCTTT
644 AAAGTGTTGTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCTTT
* *
105911 AAAAATATTTTTTTTTCTAACAAATTGTTATGTTACTTTAAATCATTTGATATTTTTTACAAAGT
709 AAAAATA----TTTTTCTAACAAATTGTTATGTTACTTTAAATTATTTGATATTGTTTACAAAGT
* * * *
105976 ATATTATGAAAAATATAAATTTAGATAATAGAATTGACGTTAGGAAGTGAGAAAATAAGTTACCT
770 ATAATATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCT
* *
106041 TAAAATATTTTTCTGAGTATATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCT
835 TAAATTATTTTTCTGAGTGTATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCT
*
106106 TTCAACATTTCCAAAATAATTTTTTGGAGT
900 TTCAACATTTCTAAAATAATTTTTTGGAGT
* **
106136 TATTTTTTATTC--AAAA--AT---TT----TTGTTCTTTATTTCATTTAATCCCAAACATACAA
1 TATTTTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCGTTTAATCCCAAATGTACAA
* *
106190 TTAGCTTCAATTTTTGTGTGTGTAAAACATTGAGAAATATTAGTTTACCTGTATCTCATTTTCTA
66 TTAGCTTCAATTTTT-TGTGTGAAAAACATAGAGAAATATTAGTTTACCTGTATCTCATTTTCTA
* * * * * * **
106255 AACAACACATTACATATTTTAAATTTGGATAAATATTTACGATAAATGTAAAATTAAGTTTATAA
130 AACAATACTTTATAGATTTTAAATATGGATAAATATTTACAATACGTGTAAAATTAAGTTTATAA
* ** *
106320 TTGTTAGATGTCTTAGCTTGGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGTTCAAT
195 TTGTTAGTTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCAAT
* * *
106385 TCCCACAGATAGCTGAGGTTGAAGGAGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGAT
260 TCCCACAGACAGCTGAGGTTGAAGGTGTATCCATTGTTATAATAGATTTATATGATTGTTTAGAT
* * * *
106450 TTATATTATATCTTAAAATAGTTAAGATGTAATATTTTT-GTTTTCTAAACATTATTGGTAATGT
325 TTATA-T-TATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGT
* * * *
106514 GCAT-G-A-CAACTTGTTCTCTAAGATTTTATTCCCAA-AGAT-GGTGTTGTTGAAAGGGTAATT
388 GCATGGCATAAACTTGTTGTCTAAGATTTTATT-CCAATAGATATGCGTTGTTGAAAGGGTAATT
* * * * *
106574 GTTGATACCTTTTTTATCTTCTATATTTCTCTAGTGCGATAGTAAGGAGTTCATAGTGTTGCTTC
452 GTCGATAACTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTC
* * * * * ** * *
106639 TGTTAACCTATACAATTTCATTTTATTTCTTGTGTATAACGGCTACATGCTGAAAAGATTAGATT
517 TCTTAACCTGTACAATTCCATTTTATTTATTGTGTGTAACGATTACATGCTAAAAAGATTAGCTT
* **
106704 CTTTTAAGTGTTCCAAGTTTTTTTTTTGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGTTA
582 ATTTTAAGTGTTCCAAG-TTTTTTCATGGAAAATT-GGTTTATTTATT-ATTGTTTTTCAAGTTA
* * * * *
106769 AAAGTGTTGTTGAGATGTTCCTTTAAAATAAGCGGTTCAAAAGAAGTAATTTTAGAATGAGCTTT
644 AAAGTGTTGTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCTTT
* * * * * *
106834 AAAAA-A-TATTCTATCAAATCGTTATTTTACTTTAAA-GAGTTTGATCTTGTTTACAAAGTATA
709 AAAAATATTTTTCTAACAAATTGTTATGTTACTTTAAATTA-TTTGATATTGTTTACAAAGTATA
*
106896 ATATGAAAAATATATATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAA
773 ATATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAA
*
106961 ATTATTTTTATG-G-GTATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCTTTC
838 ATTATTTTTCTGAGTGTATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCTTTC
*
107024 AACATTTCT-AAATAATTTTTTAGAGT
903 AACATTTCTAAAATAATTTTTTGGAGT
* * *
107050 TATTTTTTATTCAAAAAATTATAACTTAACCTTGTTCTTTATTTCGTTTAATCCCAAATTTATAA
1 TATTTTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCGTTTAATCCCAAATGTACAA
* * * * *
107115 TAAGCATCAAATTTTTTTTATGAAAAACATAGAGAAATA-TATGTTTACCTGTATCACATTTTCT
66 TTAGCTTC-AATTTTTTGTGTGAAAAACATAGAGAAATATTA-GTTTACCTGTATCTCATTTTCT
* *
107179 AAACAATGCTTTATAGATTTCAAATATGGATAAATATTTACAATACGTGTAAAATTAAGTTTATA
129 AAACAATACTTTATAGATTTTAAATATGGATAAATATTTACAATACGTGTAAAATTAAGTTTATA
* * **
107244 ATTGTTAGTTGTCTTAGCTCAGTTGGTCGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTTGA
194 ATTGTTAGTTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCAA
* * *
107309 TTCCCACAGACAGCAGAGGTTGAAGTTGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGA
259 TTCCCACAGACAGCTGAGGTTGAAGGTGTATCCATTGTTATAATAGATTTATATGATTGTTTAGA
*
107374 TTTATATTATCTAAAAATAGTTAAGA--TAATTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGT
324 TTTATATTATCTTAAAATAGTTAAGATGTAA-TTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGT
*
107437 GCGTGGCATTTAAA-TTCGTTGTCTAAGATTTTATTCCAATAGATATGCGTTGTCATG--AGGGT
388 GCATGGCA--TAAACTT-GTTGTCTAAGATTTTATTCCAATAGATATGCGTTGT--TGAAAGGGT
107499 AATTGTCGATAACTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTG
448 AATTGTCGATAACTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTG
* * ** **
107564 CTTCTGTTAACCTGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCCGAAAAGATTA
513 CTTCTCTTAACCTGTACAATTCCATTTTATTTATTGTGTGTAACGATTACATGCTAAAAAGATTA
* *
107629 GCTTCTTTTAAGTGTTCCAAG-TTTTTCATGGAAAAATAGG-TTATTTATTCATTGTTTTTCAAG
578 GCTTATTTTAAGTGTTCCAAGTTTTTTCATGG-AAAATTGGTTTATTTATT-ATTGTTTTTCAAG
* *
107692 TTAAAAGTGTTGTTGAGATGTGCCTTTAAATGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGC
641 TTAAAAGTGTTGTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGC
*
107757 TTTAAAAATATTTTTTTCTATCAAATTGTTATGTTACTTTAAA-TAGTTTGATATTGTTTACAAA
706 TTTAAAAATA--TTTTTCTAACAAATTGTTATGTTACTTTAAATTA-TTTGATATTGTTTACAAA
* * * *
107821 GTATATTATGAAAAATATAAATTTAGAAAATATAATTGATGTTAGAATGAGAGAAAATAAGTTAC
768 GTATAATATGAAAAATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTAC
107886 CTTAAATTATTTTTCTGA--GTATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATT
833 CTTAAATTATTTTTCTGAGTGTATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATT
*
107949 TTTTCAACATTTCTAAAATAATTTTTTGGAGT
898 CTTTCAACATTTCTAAAATAATTTTTTGGAGT
* *
107981 TATTGTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCGTTTAATCCCAAACGTACAA
1 TATTTTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCGTTTAATCCCAAATGTACAA
108046 T
66 T
108047 ACTTTACAGA
Statistics
Matches: 2509, Mismatches: 275, Indels: 144
0.86 0.09 0.05
Matches are distributed among these distances:
914 28 0.01
915 57 0.02
916 6 0.00
917 117 0.05
918 2 0.00
921 148 0.06
922 45 0.02
923 137 0.05
924 4 0.00
925 257 0.10
926 127 0.05
927 146 0.06
928 163 0.06
929 173 0.07
930 182 0.07
931 79 0.03
933 3 0.00
934 10 0.00
935 7 0.00
936 38 0.02
937 24 0.01
938 9 0.00
939 5 0.00
940 1 0.00
941 4 0.00
944 21 0.01
945 25 0.01
946 23 0.01
947 380 0.15
948 117 0.05
949 1 0.00
950 1 0.00
951 86 0.03
952 7 0.00
954 75 0.03
955 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (929 bp):
TATTTTTTATTCAAAAAATTATAAGTTAACCTTGTTCTTTATTTCGTTTAATCCCAAATGTACAA
TTAGCTTCAATTTTTTGTGTGAAAAACATAGAGAAATATTAGTTTACCTGTATCTCATTTTCTAA
ACAATACTTTATAGATTTTAAATATGGATAAATATTTACAATACGTGTAAAATTAAGTTTATAAT
TGTTAGTTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCAATT
CCCACAGACAGCTGAGGTTGAAGGTGTATCCATTGTTATAATAGATTTATATGATTGTTTAGATT
TATATTATCTTAAAATAGTTAAGATGTAATTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCA
TGGCATAAACTTGTTGTCTAAGATTTTATTCCAATAGATATGCGTTGTTGAAAGGGTAATTGTCG
ATAACTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTCTT
AACCTGTACAATTCCATTTTATTTATTGTGTGTAACGATTACATGCTAAAAAGATTAGCTTATTT
TAAGTGTTCCAAGTTTTTTCATGGAAAATTGGTTTATTTATTATTGTTTTTCAAGTTAAAAGTGT
TGTTGAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTAGTTTTAGAAAGAGCTTTAAAAATA
TTTTTCTAACAAATTGTTATGTTACTTTAAATTATTTGATATTGTTTACAAAGTATAATATGAAA
AATATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTT
TCTGAGTGTATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCTTTCAACATTTC
TAAAATAATTTTTTGGAGT
Found at i:112163 original size:18 final size:18
Alignment explanation
Indices: 112142--112176 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
112132 TACCATCCGG
*
112142 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
112160 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
112177 GTCCTTTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:113450 original size:13 final size:13
Alignment explanation
Indices: 113432--113461 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
113422 AACGGTCAAC
113432 GGTCAACAGGTCG
1 GGTCAACAGGTCG
*
113445 GGTCAACGGGTCG
1 GGTCAACAGGTCG
113458 GGTC
1 GGTC
113462 GGGTAAACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (13 bp):
GGTCAACAGGTCG
Found at i:113463 original size:18 final size:18
Alignment explanation
Indices: 113440--113484 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
113430 ACGGTCAACA
113440 GGTCGGGTCAACGGGTCG
1 GGTCGGGTCAACGGGTCG
*
113458 GGTCGGGTAAACGGGTCG
1 GGTCGGGTCAACGGGTCG
113476 GGTCGGGTC
1 GGTCGGGTC
113485 GGGTTGTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.20, G:0.51, T:0.18
Consensus pattern (18 bp):
GGTCGGGTCAACGGGTCG
Found at i:115647 original size:12 final size:12
Alignment explanation
Indices: 115620--115687 Score: 59
Period size: 12 Copynumber: 5.8 Consensus size: 12
115610 ATGGAGATAT
* *
115620 CAGAAATCAAAA
1 CAGAATTCATAA
*
115632 CAGAATTCATAT
1 CAGAATTCATAA
115644 CAG-ATATCATAA
1 CAGAAT-TCATAA
* * *
115656 CAGAATCCAGAT
1 CAGAATTCATAA
115668 CAGAA-TCATAA
1 CAGAATTCATAA
115679 CAGAATTCA
1 CAGAATTCA
115688 GGTAACGTAT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
11 10 0.23
12 31 0.72
13 2 0.05
ACGTcount: A:0.50, C:0.19, G:0.10, T:0.21
Consensus pattern (12 bp):
CAGAATTCATAA
Found at i:115652 original size:24 final size:23
Alignment explanation
Indices: 115616--115687 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 23
115606 GTAAATGGAG
*
115616 ATATCAGAAATCAAAACAGAATTC
1 ATATCAG-AATCATAACAGAATTC
*
115640 ATATCAGATATCATAACAGAATCC
1 ATATCAGA-ATCATAACAGAATTC
*
115664 AGATCAGAATCATAACAGAATTC
1 ATATCAGAATCATAACAGAATTC
115687 A
1 A
115688 GGTAACGTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 16 0.37
24 27 0.63
ACGTcount: A:0.50, C:0.18, G:0.10, T:0.22
Consensus pattern (23 bp):
ATATCAGAATCATAACAGAATTC
Found at i:115699 original size:47 final size:48
Alignment explanation
Indices: 115618--115708 Score: 107
Period size: 47 Copynumber: 1.9 Consensus size: 48
115608 AAATGGAGAT
* * *
115618 ATCAGAAATCAAAACAGAATTCATATCAGATATCATAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCATAACAGATATCAGAAAAGAATCCAG
*
115666 ATCAG-AATCATAACAGAATTCAGGTAAC-G-TATCAGAAAAGAAT
1 ATCAGAAATCAAAACAGAATTCA--TAACAGATATCAGAAAAGAAT
115709 TCAATTCGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
47 28 0.76
48 6 0.16
49 3 0.08
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.21
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCATAACAGATATCAGAAAAGAATCCAG
Found at i:117280 original size:26 final size:29
Alignment explanation
Indices: 117247--117322 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 29
117237 CAACGGTCAA
117247 CGGGTCAACGGGTCGGGTCAAC-G-GGG-
1 CGGGTCAACGGGTCGGGTCAACAGCGGGT
*
117273 CGGGTCAACAGGTCGGGTCAACAGGTCGGGT
1 CGGGTCAACGGGTCGGGTCAACA-G-CGGGT
*
117304 CGGGTAAACGGGTCGGGTC
1 CGGGTCAACGGGTCGGGTC
117323 GGGTCGAGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 21 0.50
28 1 0.02
30 3 0.07
31 17 0.40
ACGTcount: A:0.17, C:0.22, G:0.46, T:0.14
Consensus pattern (29 bp):
CGGGTCAACGGGTCGGGTCAACAGCGGGT
Found at i:117289 original size:18 final size:18
Alignment explanation
Indices: 117283--117327 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
117273 CGGGTCAACA
117283 GGTCGGGTCAACAGGTCG
1 GGTCGGGTCAACAGGTCG
* *
117301 GGTCGGGTAAACGGGTCG
1 GGTCGGGTCAACAGGTCG
117319 GGTCGGGTC
1 GGTCGGGTC
117328 GAGTTGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.20, G:0.49, T:0.18
Consensus pattern (18 bp):
GGTCGGGTCAACAGGTCG
Found at i:117321 original size:13 final size:13
Alignment explanation
Indices: 117247--117304 Score: 89
Period size: 13 Copynumber: 4.5 Consensus size: 13
117237 CAACGGTCAA
117247 CGGGTCAACGGGT
1 CGGGTCAACGGGT
*
117260 CGGGTCAACGGGG
1 CGGGTCAACGGGT
*
117273 CGGGTCAACAGGT
1 CGGGTCAACGGGT
*
117286 CGGGTCAACAGGT
1 CGGGTCAACGGGT
117299 CGGGTC
1 CGGGTC
117305 GGGTAAACGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.17, C:0.24, G:0.45, T:0.14
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:119287 original size:24 final size:24
Alignment explanation
Indices: 119266--119381 Score: 133
Period size: 24 Copynumber: 4.8 Consensus size: 24
119256 TGATTTCTAT
*
119266 TATAATACCTGACCTGGATTCTGA
1 TATAATACTTGACCTGGATTCTGA
***
119290 TCGGATACTTGACCTGGATTCTGA
1 TATAATACTTGACCTGGATTCTGA
** *
119314 TCGAATACTTGACCTGGATTTTGA
1 TATAATACTTGACCTGGATTCTGA
* * *
119338 TCTTATACTTGACCTGGATTTTGA
1 TATAATACTTGACCTGGATTCTGA
*
119362 TATGATACTTGACCTGGATT
1 TATAATACTTGACCTGGATT
119382 ATGTTTTAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 82 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (24 bp):
TATAATACTTGACCTGGATTCTGA
Found at i:119327 original size:48 final size:49
Alignment explanation
Indices: 119269--119381 Score: 158
Period size: 48 Copynumber: 2.3 Consensus size: 49
119259 TTTCTATTAT
*
119269 AATACCTGACCTGGATTCTGATCGGATACTTGACCTGGATTCTGAT-CG
1 AATACTTGACCTGGATTCTGATCGGATACTTGACCTGGATTCTGATACG
* ** * *
119317 AATACTTGACCTGGATTTTGATCTTATACTTGACCTGGATTTTGATATG
1 AATACTTGACCTGGATTCTGATCGGATACTTGACCTGGATTCTGATACG
119366 -ATACTTGACCTGGATT
1 AATACTTGACCTGGATT
119382 ATGTTTTAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 57 0.98
49 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (49 bp):
AATACTTGACCTGGATTCTGATCGGATACTTGACCTGGATTCTGATACG
Found at i:123821 original size:930 final size:937
Alignment explanation
Indices: 120167--124351 Score: 5201
Period size: 930 Copynumber: 4.5 Consensus size: 937
120157 TGGGGGTTAC
* *
120167 ATTTTAAATTTGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTAAGATGTCTTA
1 ATTTTAAATATGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTTAGATGTCTTA
* * * * **
120232 GCTCAGCTAGTAGAGCGCATGGCTTTTAACCATGCGGTCGTGGGTTCAATTCCGACAGACAGTTG
66 GCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAGCGG
** * *
120297 AGGTTGAAATTGTATCCATTGTTATAATAGATTTTTATGATTGTTTAGATTTATATTAGCTTAAA
131 AGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGATTTATATTATCTTAAA
* *
120362 ATAGTTAAGATGTAAT-TTTTTGTTT-GTTTTCTAAACCTTAATT-GTAATGTGCATGACATTTA
196 ATAGTTAAGA--TAATATTTTT-TTTAGTTTTCTAAACCTT-GTTGGTAGTGTGCATGACATTTA
* * * *
120424 AACTTGTTCTCTAAGATTTTATTCCCATAG--ATGAGTTATTGAAAGGGTAATTGTTGATACA-T
257 AACTTGTTCTCTAAGATTTTATTCCAATAGATATGCGTTGTTG-AAGGGTAATTGTCGATA-AGT
* * * * * * *
120486 TTTTTATCTTCTATGTTTTTCTAGTGCGATAGTAAGGAGTTCATAGTGTTGCTTATGTTAACCTA
320 TGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTG
* * * * * *
120551 CACAATTTCATTTTATTTCTTGTGTGTAACGGCTACATGCTGAAAAGATTATATTCTTTAAAGTG
385 TACAATTTCATTTTATTTCCTGTGTGTAACGACTACATGCCGAAAAGATTAGATTCTTTTAAGTG
* *
120616 TTCCAAGTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTATTTTCAAGTAAAAAGTGTTGTT
450 TTCCAAGTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTGTTTTCAAGTTAAAAGTGTTGTT
* * * * * *
120681 GAGATGTGCCTTTAAAAGAAGCGGTTCAAAAGATGTAATTTCAGAAACAGCTTTAAAAAAATATT
515 GAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAAATTATT
*
120746 CTATCAAATTGTTATGTTACTTTAAATAGTTTGGTATTGTTTACAAAGTATAATATGAAAAATAT
580 CTATCAAATTGTTATGTTACTTTAAATAGTTTGATATTGTTTACAAAGTATAATATGAAAAATAT
*
120811 AAATTTAG-----A-AA---A---TAG--A-TGAGAAAATAAGTTACCATAAATTATTTTTATGA
645 AAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTATGA
120861 GTATATATATATATATATATATATCATAAAGTATGAGGATAAAATATGAAAACAAATCATTT-AA
710 G---ATATATATATATATATATATCATAAAGTATGAGGATAAAATATGAAAACAAATC-TTTCAA
* *
120925 CAATTCTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGATTAACCTTGTTCTCT
771 CATTTCTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGATTAACCTTGTTCTTT
* * *
120990 ATTTCATTTAATCCTAAATGTATAATTAGCATCAAATTTTTTTGTGTGAAAAACATAGAGAAATA
836 ATTTCATTTAATCCCAAATGTACAATTAGTATC-AATTTTTTTGTGTG--AAA-ATAGAGAAATA
* ** *
121055 TTAGTTTACCTGTGTCAAATTTTCTAAACAATACTTTATAG
897 TTAGTTTACCTGTATCTCATTTTCTAAACAATACTTTATAA
* * *
121096 ATTTCAAATATGGATAAATATTTACGATACTTGTAAAATTAAGTTTATAATTGTTAGTTGTCTTA
1 ATTTTAAATATGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTTAGATGTCTTA
* *
121161 GCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCATAGACAGTGG
66 GCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAGCGG
*
121226 AGGTTGAAGGTGTATCCATTGTTATATTAGATTTGTATGATTGTTTAGATTTATATTTATCTTAA
131 AGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGATTTATA-TTATCTTAA
* * * * *
121291 AATAGTTAAGATGGA-A-TTTTTTTAGTTTTCTAAACCATGTCGGTAGTGTGCATGGCATTTTAA
195 AATAGTTAAGAT-AATATTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAA
* * *
121354 CTTGTTCTCTAAGATTTTATTACAATAGATATGCGTTGTCGTATGGGTAATTGTCGATAAGTTGT
259 CTTGTTCTCTAAGATTTTATTCCAATAGATATGCGTTGTTG-AAGGGTAATTGTCGATAAGTTGT
* * * **
121419 TTATTTTCTATATTTCTCTGGTGCGATAGTAAGGTGTTCAAAGTGTTGCTTCTGTTAACAAGTAC
323 TTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTAC
* *
121484 AATTTCATTTTATTTCCTGTGTGTAACGATTATATGCCG--AA-A--AGA-----TT-AGTGTTC
388 AATTTCATTTTATTTCCTGTGTGTAACGACTACATGCCGAAAAGATTAGATTCTTTTAAGTGTTC
*
121538 CAAG--TTTTTCATGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGTTAAAAGTGTTGTTGA
453 CAAGTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTG-TTTTCAAGTTAAAAGTGTTGTTGA
* * *
121601 GATGTGCCTTTAAATGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGTTTTAAAAATATTTTTT
517 GATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAA-A---TTA
* * *
121666 TTCTATCAAATTGTTATGTTACTTTAAAGAGTATT-ATAATGTTTACAAAGTATATTATGAAAAA
578 TTCTATCAAATTGTTATGTTACTTTAAATAGT-TTGATATTGTTTACAAAGTATAATATGAAAAA
* *
121730 TATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTCACCTTAAATTATTTTTC
642 TATAAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTA
* * * * *
121795 TAAGTATATATATATATATATATATCATAAAGTATGATGCTAAAAGATGAAAACAATTCTTTCAA
707 TGAG-ATATATATATATATATATATCATAAAGTATGAGGATAAAATATGAAAACAAATCTTTCAA
* * * * *
121860 CATTTCTAAAATAGTTTTTTTGGAGTTATTTTTTATTCAAAAAATTAT-AAGCTAACCTTGTTCT
771 CATTTCTAAAATA-ATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGA-TTAACCTTGTTCT
* *
121924 TTA-TTCATTTAATCCCAAACGTACAATTAGCT-TCAATTTGTTTGTGTGAAAAATATTGAGAAA
834 TTATTTCATTTAATCCCAAATGTACAATTAG-TATCAATTTTTTTGTGTG-AAAATA--GAGAAA
* *
121987 TATTAGTTTACCTGTATCTCATTTTCTAAACAATACTTTACAG
895 TATTAGTTTACCTGTATCTCATTTTCTAAACAATACTTTATAA
* * *
122030 ATTTTAAATTTGGATAAATATTTACAATACATGTAAAATTAAGTTTATAATAGTTAGATGTCTTA
1 ATTTTAAATATGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTTAGATGTCTTA
* * * * *
122095 GCTCAGCTGGTAGAGCGCATAGCTTTTAACCATGTGGTTGTGGGTTCAATTCCCATAGACAGCTG
66 GCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAGCGG
*
122160 AGGTTGAAGGAGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGATTTATATTATATCTTA
131 AGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGATTTATA-T-TATCTTA
* * *
122225 AAATAGTTAAGAT-ATAATTTTTTT-GTTTTCTAAACCTTATTGGTAATGTGCATGACATTTAAA
194 AAATAGTTAAGATAATATTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAA
* * * ** *
122288 CTTGTTCTCTAAGATTTTATTCCCAA-AGAT-GGTGTTGTTGAAAGGGTAATTGTTGATACCTTT
259 CTTGTTCTCTAAGATTTTATT-CCAATAGATATGCGTTGTTG-AAGGGTAATTGTCGATAAGTTG
* * **
122351 TTTATCTTCTATATTTCTCTAGTGCGATAGTAAGGGGTTCATAGTGTTGGTTCTGTTAACCAATA
322 TTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTA
** * *
122416 CAATTTCATTTTATTTATTGTGTGTAACGGCTACATGCTGAAAAGATTAGATTCTTTTAAGTGTT
387 CAATTTCATTTTATTTCCTGTGTGTAACGACTACATGCCGAAAAGATTAGATTCTTTTAAGTGTT
*
122481 CCAAGTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTTTTTTCAAGTTAAAAGTGTTGTTGA
452 CCAAGTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTGTTTTCAAGTTAAAAGTGTTGTTGA
* ** * *
122546 GATGTTCCTTTAAAAGAAATGCTTCAAAAGAAATAGTTTTAGAAAGAGCTTTAAAAAA-TATTCT
517 GATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAAATTATTCT
* *
122610 ATCAAATTGTTATGTGACTTTAAATAGTTTGATCTTGTTTACAAAGTATAATATGAAAAATATAA
582 ATCAAATTGTTATGTTACTTTAAATAGTTTGATATTGTTTACAAAGTATAATATGAAAAATATAA
122675 ATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTATGAGT
647 ATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTATGAG-
* * * *
122740 ATATATGTATATATGTATATCATACAGTATGAGGATAAAATATGAAAACAAATCTTTTAACATTT
711 ATATATATATATATATATATCATAAAGTATGAGGATAAAATATGAAAACAAATCTTTCAACATTT
*
122805 CTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGATTAACCTGGTTCTTTATTTC
776 CTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGATTAACCTTGTTCTTTATTTC
* * * *
122870 ATTTAATCCCAAATTTACAATTAGTATCAATTTCTTT-TGTG-AAA-A-A-ACATA-T-GTTTTC
841 ATTTAATCCCAAATGTACAATTAGTATCAATTTTTTTGTGTGAAAATAGAGAAATATTAGTTTAC
*
122928 TTGTAT-TACATTTTCTAAACAATACTTTATAA
906 CTGTATCT-CATTTTCTAAACAATACTTTATAA
* **
122960 ATTTTAAATATGGATAAATATTTACGATACGTGTAAAATTAAGTTTATAATTGTTATTTGTCTTA
1 ATTTTAAATATGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTTAGATGTCTTA
*
123025 GCTCAGCTGGTCGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAGCGG
66 GCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAGCGG
* * *
123090 AGGTTGAAGTTGTATCCATTGTTATAATAGAGATTTGTAGGATTGTTTAGATTTATATTATCTAA
131 AGGTTGAAGGTGTATCCATTGTTATAAT--AGATTTGTATGATTGTTTAGATTTATATTATCTTA
* * *
123155 AAATAGCTAAGATAATTTTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGGCATTTAAA
194 AAATAGTTAAGATAATATTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAA
** * * *
123220 CTCATTGTCTAAGATTTTAATCCAATAGATATGCGTTATCATG-AGGGTAATTGTCGATAAGTTG
259 CTTGTTCTCTAAGATTTTATTCCAATAGATATGCGTTGT--TGAAGGGTAATTGTCGATAAGTTG
*
123284 TTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACTTGTA
322 TTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTA
** * * *
123349 CAATTTCATTTTATTTCCCATGTGTAACGATTACATGCCGGAAAGATTAGCTTCTTTTAAGTGTT
387 CAATTTCATTTTATTTCCTGTGTGTAACGACTACATGCCGAAAAGATTAGATTCTTTTAAGTGTT
* * * *
123414 CTAAG-TTTTTTCGTGGAAAATTAGGTTTATTTATTCAATGTTTTCAAGTTAAAATTGTTGTTGA
452 CCAAGTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTGTTTTCAAGTTAAAAGTGTTGTTGA
*
123478 GATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAATATTTTTT
517 GATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAA-A-TTATT
* * *
123543 CTATCAGATTGTTATGTTACTTTAAATAGTTTGATATTGTTTACAAAGTGTATTATGAAAAATAT
580 CTATCAAATTGTTATGTTACTTTAAATAGTTTGATATTGTTTACAAAGTATAATATGAAAAATAT
* * *
123608 AAATTTAGAAAATAGAATTGATGTTAGAAAGTCAAAAAATAAGTTACCTTAAATTATTTTTCTGA
645 AAATTTAGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTATGA
* *
123673 G-T-T-TATATATATATATATCATAAAGTATGAGGCTAAAATATGAAAACAATTCTTTCAACATT
710 GATATATATATATATATATATCATAAAGTATGAGGATAAAATATGAAAACAAATCTTTCAACATT
* * * *
123735 TCTAAAATAATTTTTGGGAGTTA-TTTTTATTCAAAAAGTTAACCG-TTAACCTTGTTCATAACT
775 TCTAAAATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTT-ATCGATTAACCTTGTTCTTTATT
** * * ** * ** * *
123798 TCATTTTTTCACAAATGTACAATTACCTTTATTTATTTATTTTTTGAAAAATATAAAGAAACATT
839 TCATTTAATCCCAAATGTACAATTA---GTATCAATTT-TTTTGTGTGAAA-ATAGAGAAATATT
* * ** *
123863 AGTTTACTTGTATCTCAATTTCTAAATTATGCTTTATAA
899 AGTTTACCTGTATCTCATTTTCTAAACAATACTTTATAA
* * ** * * * *
123902 ATTATAAATACGGATAAATATTTACGATATGTGTAAAATCAATTTTATAATTGTTAGCTATCTTA
1 ATTTTAAATATGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTTAGATGTCTTA
* ** * * *
123967 GCT-ACTCTGGTAGAGCATATGACTTTTAACCATGTTGTCGTGGGTTCGATTCCCACAAAC-GAC
66 GCTCA-GCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAG-C
* * * * *
124030 GGAGGTTG-AGGTGTATCCATTGCTATAATAGATATGTATCATTGTTTTGGA-TTATATTGTCTT
129 GGAGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTATGATTG-TTTAGATTTATATTATCTT
* * * *
124093 AAAATAGTTAAGAT-GTATTTTTTTTA------TAAACCTTGTTGGTAGTGTTCATGCCCTTTAA
193 AAAATAGTTAAGATAATATTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAA
* * * ** * * * *
124151 TCTTGTTGTCTAAGAGTTTATTCCAATAGGCATGTGTTGTAGAAAGGGCAATTGCCGATAAGTTG
258 ACTTGTTCTCTAAGATTTTATTCCAATAGATATGCGTTGTTG-AAGGGTAATTGTCGATAAGTTG
* * *
124216 -TCATCTTCTAT-TTT-TATGAAGTGCAATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTG
322 TTTATCTTCTATATTTCTCTG--GTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTG
* * * * ** * * * *
124278 TACAATTCCATTTTATTTCTTCTGTGTAATGGTTTCATGCTGAAAATATTAG-TATCTTTTAGGT
385 TACAATTTCATTTTATTTCCTGTGTGTAACGACTACATGCCGAAAAGATTAGAT-TCTTTTAAGT
*
124342 TTTCCAAGTT
449 GTTCCAAGTT
124352 ATCGGTGTTT
Statistics
Matches: 2841, Mismatches: 324, Indels: 179
0.85 0.10 0.05
Matches are distributed among these distances:
917 32 0.01
918 73 0.03
919 12 0.00
920 1 0.00
922 69 0.02
923 2 0.00
925 2 0.00
927 6 0.00
928 66 0.02
929 176 0.06
930 384 0.14
931 202 0.07
932 278 0.10
933 273 0.10
934 300 0.11
935 254 0.09
936 50 0.02
937 35 0.01
938 14 0.00
939 88 0.03
940 233 0.08
941 22 0.01
942 148 0.05
943 3 0.00
944 12 0.00
945 74 0.03
946 32 0.01
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (937 bp):
ATTTTAAATATGGATAAATATTTACGATACATGTAAAATTAAGTTTATAATTGTTAGATGTCTTA
GCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGACAGCGG
AGGTTGAAGGTGTATCCATTGTTATAATAGATTTGTATGATTGTTTAGATTTATATTATCTTAAA
ATAGTTAAGATAATATTTTTTTTAGTTTTCTAAACCTTGTTGGTAGTGTGCATGACATTTAAACT
TGTTCTCTAAGATTTTATTCCAATAGATATGCGTTGTTGAAGGGTAATTGTCGATAAGTTGTTTA
TCTTCTATATTTCTCTGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAAT
TTCATTTTATTTCCTGTGTGTAACGACTACATGCCGAAAAGATTAGATTCTTTTAAGTGTTCCAA
GTTTTTTTCTTGGAAAATTAGGTTTATTTATTCATTGTTTTCAAGTTAAAAGTGTTGTTGAGATG
TGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTAAAAAATTATTCTATCA
AATTGTTATGTTACTTTAAATAGTTTGATATTGTTTACAAAGTATAATATGAAAAATATAAATTT
AGAAAATAGAATTGATGTTAGAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTATGAGATATA
TATATATATATATATCATAAAGTATGAGGATAAAATATGAAAACAAATCTTTCAACATTTCTAAA
ATAATTTTTGGGAGTTATTTTTTATTCAAAAAGTTATCGATTAACCTTGTTCTTTATTTCATTTA
ATCCCAAATGTACAATTAGTATCAATTTTTTTGTGTGAAAATAGAGAAATATTAGTTTACCTGTA
TCTCATTTTCTAAACAATACTTTATAA
Found at i:125050 original size:2 final size:2
Alignment explanation
Indices: 125043--125070 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
125033 AACCCAGAAA
125043 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125071 TTAATTGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125813 original size:18 final size:18
Alignment explanation
Indices: 125790--125828 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
125780 ACCGGTTGTA
125790 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
125808 ACCCGACCTGACCCGTTG
1 ACCCGACCCGACCCGTTG
125826 ACC
1 ACC
125829 GTTGACCGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.49, G:0.21, T:0.13
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:125911 original size:29 final size:29
Alignment explanation
Indices: 125879--126029 Score: 115
Period size: 29 Copynumber: 5.2 Consensus size: 29
125869 ACTATTATGT
* *
125879 TAATTATTTTGAAAAGGGTGTTATTTTCG
1 TAATTATTTTAAAAAGGGTGATATTTTCG
* ** *
125908 TAATTTTTTTAAAAAAAGTGATAATTTCG
1 TAATTATTTTAAAAAGGGTGATATTTTCG
* * *
125937 TAAAATT-TATTAAAAAGAGTGATATTTTAG
1 T--AATTATTTTAAAAAGGGTGATATTTTCG
* * * * *
125967 TAATTATTTTGAAAATGATGTTATTTTGG
1 TAATTATTTTAAAAAGGGTGATATTTTCG
* * * *
125996 TAATTAATTTCAAAATGGTGCTATTTTCG
1 TAATTATTTTAAAAAGGGTGATATTTTCG
126025 TAATT
1 TAATT
126030 TTAAAAAAAG
Statistics
Matches: 97, Mismatches: 22, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
28 4 0.04
29 69 0.71
30 20 0.21
31 4 0.04
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (29 bp):
TAATTATTTTAAAAAGGGTGATATTTTCG
Found at i:125952 original size:30 final size:30
Alignment explanation
Indices: 125903--125969 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
125893 AGGGTGTTAT
* *
125903 TTTCGT-AATTTTTTTAAAAAAAGTGATAA
1 TTTCGTAAAATTTATTAAAAAAAGTGATAA
* *
125932 TTTCGTAAAATTTATTAAAAAGAGTGATAT
1 TTTCGTAAAATTTATTAAAAAAAGTGATAA
*
125962 TTTAGTAA
1 TTTCGTAA
125970 TTATTTTGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.19
30 26 0.81
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.43
Consensus pattern (30 bp):
TTTCGTAAAATTTATTAAAAAAAGTGATAA
Found at i:126778 original size:24 final size:23
Alignment explanation
Indices: 126746--126849 Score: 109
Period size: 24 Copynumber: 4.3 Consensus size: 23
126736 TATCTGGTTT
*
126746 TTGACCTGGATCTTAATATGATAC
1 TTGACCTGGAT-TTTATATGATAC
*
126770 TTGACCTGGATTATTATATGATAT
1 TTGACCTGGATT-TTATATGATAC
*
126794 TTGATCTGGATTTTTATATGATAC
1 TTGACCTGGA-TTTTATATGATAC
* * * *
126818 TTGACATGGATTCTGATCTGTTAC
1 TTGACCTGGATT-TTATATGATAC
126842 TTGACCTG
1 TTGACCTG
126850 AATTATGTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
23 3 0.04
24 62 0.93
25 2 0.03
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (23 bp):
TTGACCTGGATTTTATATGATAC
Found at i:126875 original size:2 final size:2
Alignment explanation
Indices: 126868--126920 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
126858 TTTAATTTTG
126868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126910 AT AT AT AT AT A
1 AT AT AT AT AT A
126921 CACGTTATGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:127517 original size:14 final size:14
Alignment explanation
Indices: 127498--127551 Score: 99
Period size: 14 Copynumber: 3.9 Consensus size: 14
127488 GTTACAGTGC
127498 CTTTAAAAGAAGCG
1 CTTTAAAAGAAGCG
*
127512 CTTTAAAAGAAGAG
1 CTTTAAAAGAAGCG
127526 CTTTAAAAGAAGCG
1 CTTTAAAAGAAGCG
127540 CTTTAAAAGAAG
1 CTTTAAAAGAAG
127552 TAGTTTTAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.22
Consensus pattern (14 bp):
CTTTAAAAGAAGCG
Found at i:127538 original size:28 final size:29
Alignment explanation
Indices: 127498--127565 Score: 111
Period size: 28 Copynumber: 2.3 Consensus size: 29
127488 GTTACAGTGC
127498 CTTTAAAAGAAGCGCTTTAAAAGAAG-AG
1 CTTTAAAAGAAGCGCTTTAAAAGAAGTAG
127526 CTTTAAAAGAAGCGCTTTAAAAGAAGTAG
1 CTTTAAAAGAAGCGCTTTAAAAGAAGTAG
*
127555 TTTTAGAAAGA
1 CTTTA-AAAGA
127566 GCTTTAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 26 0.70
29 6 0.16
30 5 0.14
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.25
Consensus pattern (29 bp):
CTTTAAAAGAAGCGCTTTAAAAGAAGTAG
Found at i:128646 original size:2 final size:2
Alignment explanation
Indices: 128639--128692 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
128629 ATTATTTTCC
128639 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
128681 TA TA TA TA TA TA
1 TA TA TA TA TA TA
128693 GATAAACTAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:130836 original size:2 final size:2
Alignment explanation
Indices: 130829--130894 Score: 125
Period size: 2 Copynumber: 33.5 Consensus size: 2
130819 TTATTTTGAG
130829 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
130871 TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
130895 CTAAAATACG
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 62 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:131790 original size:971 final size:970
Alignment explanation
Indices: 129923--131796 Score: 2960
Period size: 971 Copynumber: 1.9 Consensus size: 970
129913 AAGTATGAGG
*
129923 CTAAAATACGAAAACAATTCTTTCAACATTTCTTAAATAATTTTTGGGAGGTATTTTTTATTCAA
1 CTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATTTTTGGGAGGTATTTTTTATTCAA
* * *
129988 AAAGTTATCAGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTATAATTAGCTTCAAATTT
66 AAAGTCATCAGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTCAAATGT
*
130053 TGTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTACGTTTTATAG
131 TGTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAAGTTTTATAG
130118 ATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATTGTTAGTTGTCTTA
196 ATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATTGTTAGTTGTCTTA
* * * * * *
130183 GCTCTGTTGGTAGAGCGCATGACTTTGAATCATGTGGTAGTGGGTTCGATTCCCAAAGACGGTGG
261 GCTCTGCTAGTAGAGCACATGACTTTGAATCATGTGGTACTAGGTTCAATTCCCAAAGACGGTGG
*
130248 AGGTTGAGGTGTATCCATTGTTAATAATATAGATATGATTGTTTAGATTTATATTTATATTAAAA
326 AGGTTGAAGTGTATCCATTGTTAATAATATAGATATGATTGTTTAGATTTATATTTATATTAAAA
* * *
130313 TAGTTAAGATGTAAATTGTTTTTTATAGTTTTCTAAACCTTGTTGGTTGTGTGCATGTCATTTAA
391 TAGTTAAGATGTAAATTGTTTTTTATAGTTTTCTAAACCTTGCTGGTAGTGTGCATGGCATTTAA
* * * * * *
130378 ACTTGTTGTCTAAGGTTTTATTCCAATAGATATGCGTTGTCATGACGGTAATTGTCGATAAGTTG
456 ACTTGATGTCTAAGATTTAATTACAATAGA-ATGCGTTATCATGACGGTAATTGTCGATAAGCTG
** * * *
130443 TTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGTTTCATAGTGTTACTTTTGTTAACATGTA
520 TTTATCTTCTATATTTCTCCAGTGCAATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACATGTA
* *
130508 CAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAAGTGGT
585 CAATTTCATTTTATTTCATATGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAAGTGGT
** * *
130573 CCAAGTTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGTTAAAAGTGTTCTTGA
650 CCAAGTTTTTTCGTGGAAAATTAGGTTTAAATATTCATTGATTTTCAAGTTAAAAGTGTTCTTCA
* * *
130638 GATGTGTCTTTAAAATAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATATTTTTC
715 GATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATATTTTTA
*
130703 TATCAAATTGTTATGTTACTTTAAATAGTTTGATATTGTTTACAAAGAATATTATGAAAATAATT
780 TATCAAATTGTTATGTTACTTTAAAGAGTTTGATATTGTTTACAAAGAATATTATGAAAATAA-T
130768 AATTAAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAGTTACTTAAATTATTTTGAGTATA
844 AATTAAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAGTTACTTAAATTATTTTGAGTATA
130833 TATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAT
909 TATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAT
130895 CTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATTTTTGGGAGGTATTTTTTATTCAA
1 CTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATTTTTGGGAGGTATTTTTTATTCAA
*
130960 AAAGTCATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTCAAAATG
66 AAAGTCATCAGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTC-AAATG
* *
131025 TT-TGTGTGAAAAA-ATAGATGAATATTAGTTTACCTTATCTCATTTTCTTAATTAAGTTTTATA
130 TTGTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAAGTTTTATA
* *
131088 GATTATAAATATGGATAAATATTTACTATACATGTAAAATCAAATTTATAATTGTTAGTTGTTTT
195 GATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATTGTTAGTTGTCTT
* * * * *
131153 AGCTCTGCTATTAGAGCACATGGCTTTGAATCATGTGGTTCTATGTTCAATTCCCACAGACGGTG
260 AGCTCTGCTAGTAGAGCACATGACTTTGAATCATGTGGTACTAGGTTCAATTCCCAAAGACGGTG
* *
131218 GAGGTTGAAGTGTATCCATTGTT-ATAATATAGACATGTATGATTTTTTAGATTTATATTATATT
325 GAGGTTGAAGTGTATCCATTGTTAATAATATAG--A--TATGATTGTTTAGATTTATATT-TATA
*
131282 TTAAAATTGTTAAGATGT-AA-T-TTTTTT-TAGTTTTCTAAACCTTGCTGGTAGTGTGCATGGC
385 TTAAAATAGTTAAGATGTAAATTGTTTTTTATAGTTTTCTAAACCTTGCTGGTAGTGTGCATGGC
* *
131343 ATTTAAACTTGATGTCTAAGATTTAATTACAATAG-ATGTGTTATCATGAGGGTAATTGTCGATA
450 ATTTAAACTTGATGTCTAAGATTTAATTACAATAGAATGCGTTATCATGACGGTAATTGTCGATA
*
131407 AGCTGTTTATCTTCTATATTTCTCCAGTGCAATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAAC
515 AGCTGTTTATCTTCTATATTTCTCCAGTGCAATAGTAAGGGGTTCATAGTGTTACTTCTGTTAAC
*
131472 CTGTACAA-TTCATTTTATTTCATATGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAA
580 ATGTACAATTTCATTTTATTTCATATGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAA
* *
131536 GTGTTCCTAATTTTTTTCGTGGAAAATTAGGTTTAAATATTCATTGATTTTCAAGTTAAAAGTGT
645 GTGGTCC-AAGTTTTTTCGTGGAAAATTAGGTTTAAATATTCATTGATTTTCAAGTTAAAAGTGT
* *
131601 TGTTCAGATGTGCCTTTAAAAGAAGCTCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATA
709 TCTTCAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATA
* * **
131666 TTTTTTATATCCAATTGTTATGTTACTTTAAAGAGTTTGGTATTGTTTACAAATTATATTATGAA
774 -TTTTTATATCAAATTGTTATGTTACTTTAAAGAGTTTGATATTGTTTACAAAGAATATTATG-A
** * *
131731 AAATAGA-AATTTTGAAAATATAATTGATTTTAGTAAA-TGAGAAAATAAGTTACCTTAAATTAT
837 AAATA-ATAATTAAGAAAATATAATTGATGTTA-CAAAGTGAGAAAATAAGTTA-CTTAAATTAT
131794 TTT
899 TTT
131797 TCTAAGTATA
Statistics
Matches: 825, Mismatches: 65, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
968 60 0.07
969 204 0.25
970 102 0.12
971 270 0.33
972 139 0.17
973 7 0.01
974 23 0.03
975 20 0.02
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (970 bp):
CTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATTTTTGGGAGGTATTTTTTATTCAA
AAAGTCATCAGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTCAAATGT
TGTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAAGTTTTATAG
ATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATTGTTAGTTGTCTTA
GCTCTGCTAGTAGAGCACATGACTTTGAATCATGTGGTACTAGGTTCAATTCCCAAAGACGGTGG
AGGTTGAAGTGTATCCATTGTTAATAATATAGATATGATTGTTTAGATTTATATTTATATTAAAA
TAGTTAAGATGTAAATTGTTTTTTATAGTTTTCTAAACCTTGCTGGTAGTGTGCATGGCATTTAA
ACTTGATGTCTAAGATTTAATTACAATAGAATGCGTTATCATGACGGTAATTGTCGATAAGCTGT
TTATCTTCTATATTTCTCCAGTGCAATAGTAAGGGGTTCATAGTGTTACTTCTGTTAACATGTAC
AATTTCATTTTATTTCATATGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAAGTGGTC
CAAGTTTTTTCGTGGAAAATTAGGTTTAAATATTCATTGATTTTCAAGTTAAAAGTGTTCTTCAG
ATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATATTTTTAT
ATCAAATTGTTATGTTACTTTAAAGAGTTTGATATTGTTTACAAAGAATATTATGAAAATAATAA
TTAAGAAAATATAATTGATGTTACAAAGTGAGAAAATAAGTTACTTAAATTATTTTGAGTATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAT
Found at i:132138 original size:930 final size:932
Alignment explanation
Indices: 129780--133122 Score: 4538
Period size: 932 Copynumber: 3.6 Consensus size: 932
129770 TCAAAAGTAG
* * *
129780 TACTTTAAACAGATAGATATTGTTTACAAAGTATATTATGAAAAATATAAATTTAGAAAATATAA
1 TACTTTAAATAGTTTGATATTGTTTACAAAGTATATTATGAAAAATA-AAATTTAGAAAATATAA
** * *
129845 TTGATGGTATAAAGTGAGAAAATAAGTTACCTTAAATTATTTTTCTGAGTGTATATATATATATC
65 TTGATTTTAGAAAATGAGAAAATAAGTTACCTTAAATTATTTTTCT-A---TATATATATATATC
* *
129910 ATAAAGTATGAGGCTAAAATACGAAAACAATTCTTTCAACATTTCTTAAATAATTTTTGGGAGGT
126 ATAAAGTATGAGGCTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATATTTGGGAGGT
* *
129975 ATTTTTTATTCAAAAAGTTATCAGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTATAAT
191 ATTTTTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAAT
*
130040 TAGCTTCAAATTTTGTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAA
256 TAGCTTCAAATATT-TGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAA
*
130105 TTACGTTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATT
320 TTAAGTTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATT
* *
130170 GTTAGTTGTCTTAGCTCTGTTGGTAGAGCGCATGACTTTGAATCATGTGGTAGTGGGTTCGATTC
385 GTTAGTTGTCTTAGCTCTGCTGGTAGAGCGCATGGCTTTGAATCATGTGGTAGTGGGTTCGATTC
*
130235 CCAAAGACGGTGGAGGTTGAGGTGTATCCATTGTTAATAATATAG--A--TATGATTGTTTAGAT
450 CCACAGACGGTGGAGGTTGAGGTGTATCCATTGTT-ATAATATAGATATGTATGATTGTTTAGAT
*
130296 TTATATTTATATTAAAATAGTTAAGATGTAAATTGTTTTTTATAGTTTTCTAAACCTTGTTGGTT
514 TTATATTTATATTAAAATAGTTAAGATGT-AA-T-TTTTTT-TAGTTTTCTAAACCTTGCTGGTT
* * * * * *
130361 GTGTGCATGTCATTTAAACTTGTTGTCTAAGGTTTTATTCCAATAGATATGCGTTGTCATGACGG
575 GTGTGCATGGCATTTAAACTTGATGTCTAAGATTTTATTACAATAGA-ATGCGTTATCATGAGGG
* *
130426 TAATTGTCGATAAGTTGTTTATCTTCTATATTTCTCTGGTGCGATAGTAAGGGTTTCATAGTGTT
639 TAATTGTCGATAAGTTGTTTATCTTCTATATTTCTCCGGTGCGATAGTAAGGGGTTCATAGTGTT
* * * * *
130491 ACTTTTGTTAACATGTACAATTTCATTTTATTTCCTGTGTGTAACGATTACATGCTGAAAAGATT
704 GCTTCTGTTAACCTGTACAA-TTCATTTTATTTCATATGTGTAACGATTACATGCTGAAAAGATT
*
130556 AGCTTCTTTTAAGTGGTCC-AAGTTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCA
768 AGCTTCTTTTAAGTGTTCCTAAGTTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCA
* * * *
130620 AGTTAAAAGTGTTCTTGAGATGTGTCTTTAAAATAAGCGCTTCAAAAGAAGTACTTTTAGAAAGA
833 AGTTAAAAGTGTTGTTAAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGA
130685 GCTTTGAAAATA-TTTTTCTATCAAATTGTTATGT
898 GCTTTGAAAATATTTTTTCTATCAAATTGTTATGT
* *
130719 TACTTTAAATAGTTTGATATTGTTTACAAAGAATATTATG-AAAATAATTAATTAAGAAAATATA
1 TACTTTAAATAGTTTGATATTGTTTACAAAGTATATTATGAAAAATAA--AATTTAGAAAATATA
* **
130783 ATTGATGTTACAAAGTGAGAAAATAAGTTACTTAAATTATTTTGAGTATATATATATATATATAT
64 ATTGAT-TT------T-AGAAAATGAG--A---AAA-TA-----AG----T-TACCT-TA-A-AT
* * * * **
130848 ATATATATATATATATATATATATATATATATATATATATATAATATCTAAAATACGAAAACAAT
102 -TAT-T-T-T-TCTATATATATATATAT-CATA-A-A-GTATGA-GGCTAAAATACGAAAACAAT
* *
130913 TCTTTCAACATTTCTAAAATAATTTTTGGGAGGTATTTTTTATTCAAAAAGTCATCGGTTAACCT
157 TCTTTCAACATTTCTAAAATAATATTTGGGAGGTATTTTTTATTCAAAAAGTTATCGGTTAACCT
*
130978 TGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTCAAAATGTTTGTGTGAAAAA-ATAG
222 TGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCTTC-AAATATTTGTGTGAAAAACATAG
* *
131042 ATGAATATTAGTTTACCTTATCTCATTTTCTTAATTAAGTTTTATAGATTATAAATATGGATAAA
286 ATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAAGTTTTATAGATTATAAATATGGATAAA
* * ** *
131107 TATTTACTATACATGTAAAATCAAATTTATAATTGTTAGTTGTTTTAGCTCTGCTATTAGAGCAC
351 TATTTACGATACATGTAAAATCAAATTTATAATTGTTAGTTGTCTTAGCTCTGCTGGTAGAGCGC
** ** * *
131172 ATGGCTTTGAATCATGTGGTTCTATGTTCAATTCCCACAGACGGTGGAGGTTGAAGTGTATCCAT
416 ATGGCTTTGAATCATGTGGTAGTGGGTTCGATTCCCACAGACGGTGGAGGTTGAGGTGTATCCAT
* * * *
131237 TGTTATAATATAGACATGTATGATTTTTTAGATTTATATTATATTTTAAAATTGTTAAGATGTAA
481 TGTTATAATATAGATATGTATGATTGTTTAGATTTATATT-TATATTAAAATAGTTAAGATGTAA
*
131302 TTTTTTTTAGTTTTCTAAACCTTGCTGGTAGTGTGCATGGCATTTAAACTTGATGTCTAAGATTT
545 TTTTTTTTAGTTTTCTAAACCTTGCTGGTTGTGTGCATGGCATTTAAACTTGATGTCTAAGATTT
* * *
131367 AATTACAATAG-ATGTGTTATCATGAGGGTAATTGTCGATAAGCTGTTTATCTTCTATATTTCTC
610 TATTACAATAGAATGCGTTATCATGAGGGTAATTGTCGATAAGTTGTTTATCTTCTATATTTCTC
* *
131431 CAGTGCAATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCATTTTATTTCATA
675 CGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAACCTGTACAATTCATTTTATTTCATA
*
131496 TGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAAGTGTTCCTAATTTTTTTCGTGGAAA
740 TGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAAGTGTTCCTAAGTTTTTTCGTGGAAA
** * *
131561 ATTAGGTTTAAATATTCATTGATTTTCAAGTTAAAAGTGTTGTTCAGATGTGCCTTTAAAAGAAG
805 ATTAGGTTTATTTATTCATTGTTTTTCAAGTTAAAAGTGTTGTTAAGATGTGCCTTTAAAAGAAG
* * *
131626 CTCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATATTTTTTATATCCAATTGTTATGT
870 CGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATATTTTTTCTATCAAATTGTTATGT
* * * *
131689 TACTTTAAAGAGTTTGGTATTGTTTACAAATTATATTATGAAAAATAGAAATTTTGAAAATATAA
1 TACTTTAAATAGTTTGATATTGTTTACAAAGTATATTATGAAAAATA-AAATTTAGAAAATATAA
* *
131754 TTGATTTTAGTAAATGAGAAAATAAGTTACCTTAAATTATTTTTCTA-A-GTATATATATCATAA
65 TTGATTTTAGAAAATGAGAAAATAAGTTACCTTAAATTATTTTTCTATATATATATATATCATAA
* **
131817 AGTATGAGGCTAAAATACGAAAACAATTCTTTCACCATTTCTAAAAT-ATATTTGGGATATATTT
130 AGTATGAGGCTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATATTTGGGAGGTATTT
*
131881 TTTATTCAAAAAGTTATTGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGC
195 TTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGC
*
131946 TTCAAATATTT-TGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTATG
260 TTCAAATATTTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAAG
* *
132010 TTTTATAGATTATAAATATGGATAAATATTTACGAGACATGTAAAATAAAATTTTATAATTGTTA
325 TTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAA-TTTATAATTGTTA
* *
132075 GTTATCTTAGCTCTGCTGGTAGAGCGCATGGCTTTGAATCATGTGGTAGTGGGTTTGATTCCCAC
389 GTTGTCTTAGCTCTGCTGGTAGAGCGCATGGCTTTGAATCATGTGGTAGTGGGTTCGATTCCCAC
* *
132140 AGACGGTGAAGGTTGAGGTGTATCCATTGTTATAATATATAGATATGTATGATTGTTTAGGTTTA
454 AGACGGTGGAGGTTGAGGTGTATCCATTGTTAT-A-ATATAGATATGTATGATTGTTTAGATTTA
* * * * * * *
132205 TA-TTGTCTTAAAATAGCTAGGATGTAATTTTTTTTAGTTTTCTAATCCTT-CTTGATTTTGTGC
517 TATTTATATTAAAATAGTTAAGATGTAATTTTTTTTAGTTTTCTAAACCTTGC-TGGTTGTGTGC
* * * * *
132268 ATGGCTTTTAAACTT-ATTGTCTAGGATTTTATTTCAATAGATATGCGTTATCGA-AAGGGAAAT
581 ATGGCATTTAAACTTGA-TGTCTAAGATTTTATTACAATAGA-ATGCGTTATC-ATGAGGGTAAT
* *
132331 TG-CGAATAAGTTGTTTATCTTCTATATTTCTGCGGTGCGATAGTAAGGGGTTCATAGTGATGCT
643 TGTCG-ATAAGTTGTTTATCTTCTATATTTCTCCGGTGCGATAGTAAGGGGTTCATAGTGTTGCT
* * * * * *
132395 TCTCTT-ACCTTATAGAATTCCATTTTATTT-ATTTTATGTAAC-AGCTACATGCTGAAAAGATT
707 TCTGTTAACC-TGTACAATT-CATTTTATTTCA-TATGTGTAACGA-TTACATGCTGAAAAGATT
132457 AGCTTCTTTTAAGTGTTCCT-AGTTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCA
768 AGCTTCTTTTAAGTGTTCCTAAGTTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCA
* * * *
132521 AGTTAAAATTGTTGTTAAGAAGTGCCTTTAAAAGAAGCGCTTTAAAAGAAATACTTTTAGAAAGA
833 AGTTAAAAGTGTTGTTAAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGA
132586 GCTTTGAAAATATTTTTTCTATCAAATTGTTATGT
898 GCTTTGAAAATATTTTTTCTATCAAATTGTTATGT
*
132621 TACTTTAAATAGTTTGATATTGTTTACAAAATATATTATGAAAAAT---A--T----AAT-T-A-
1 TACTTTAAATAGTTTGATATTGTTTACAAAGTATATTATGAAAAATAAAATTTAGAAAATATAAT
* *
132674 --ATTTTAGAAAATGAGAAAATAAGTTACCTTAAATTATTTTTC--TA-A-GTATATATCATATA
66 TGATTTTAGAAAATGAGAAAATAAGTTACCTTAAATTATTTTTCTATATATATATATATCATAAA
* * * *
132733 GTATGAGGCTAAACTACGAAAACAATTTTTTCAACATTTCTAAAATAA-ATTTTGGGATGTACTT
131 GTATGAGGCTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATA-TTTGGGAGGTATTT
*
132797 TTTATTCAAAAAGTTATCGCTTAACCTTGTTCTTTAC-TCATTTAATCCCAAATGTACAATTAGC
195 TTTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGC
* *
132861 TTCAAATATTTTGTGTGAAAAACATAAATAAATATTAGTTTACCTTATCTCTTTTTCTAAATTAA
260 TTCAAATA-TTTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAA
*
132926 GTTTTATAGATTATAAATATGGATACATATTTACGATACATGTAAAATCAAATTTATAATTGTTA
324 GTTTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATTGTTA
* *
132991 GTCGTCTTAGCTTTGCTGGTAGAGCGCATGGCTTTGAATCATGTGGTAGTGGGTTCGATTCCCAC
389 GTTGTCTTAGCTCTGCTGGTAGAGCGCATGGCTTTGAATCATGTGGTAGTGGGTTCGATTCCCAC
* * *
133056 AGATGGTGGAGGTTGAGGTGTATCCATTGTTATAATATAGATATGTATGATTATTTAGGTTTATA
454 AGACGGTGGAGGTTGAGGTGTATCCATTGTTATAATATAGATATGTATGATTGTTTAGATTTATA
133121 TT
519 TT
133123 GTCGTGAATA
Statistics
Matches: 2148, Mismatches: 187, Indels: 162
0.86 0.07 0.06
Matches are distributed among these distances:
914 30 0.01
915 93 0.04
916 157 0.07
917 139 0.06
920 1 0.00
921 1 0.00
922 3 0.00
926 1 0.00
928 10 0.00
929 97 0.05
930 261 0.12
931 44 0.02
932 293 0.14
933 57 0.03
934 1 0.00
935 3 0.00
936 9 0.00
937 2 0.00
938 9 0.00
939 57 0.03
940 1 0.00
941 1 0.00
942 3 0.00
943 2 0.00
944 1 0.00
945 2 0.00
946 4 0.00
947 8 0.00
949 1 0.00
951 2 0.00
952 3 0.00
953 2 0.00
956 2 0.00
957 3 0.00
958 2 0.00
960 1 0.00
962 9 0.00
963 4 0.00
964 2 0.00
965 1 0.00
966 2 0.00
967 16 0.01
968 64 0.03
969 208 0.10
970 87 0.04
971 260 0.12
972 139 0.06
973 7 0.00
974 23 0.01
975 20 0.01
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (932 bp):
TACTTTAAATAGTTTGATATTGTTTACAAAGTATATTATGAAAAATAAAATTTAGAAAATATAAT
TGATTTTAGAAAATGAGAAAATAAGTTACCTTAAATTATTTTTCTATATATATATATATCATAAA
GTATGAGGCTAAAATACGAAAACAATTCTTTCAACATTTCTAAAATAATATTTGGGAGGTATTTT
TTATTCAAAAAGTTATCGGTTAACCTTGTTCTTTACTTCATTTAATCCCAAATGTACAATTAGCT
TCAAATATTTGTGTGAAAAACATAGATAAATATTAGTTTACCTTATCTCATTTTCTAAATTAAGT
TTTATAGATTATAAATATGGATAAATATTTACGATACATGTAAAATCAAATTTATAATTGTTAGT
TGTCTTAGCTCTGCTGGTAGAGCGCATGGCTTTGAATCATGTGGTAGTGGGTTCGATTCCCACAG
ACGGTGGAGGTTGAGGTGTATCCATTGTTATAATATAGATATGTATGATTGTTTAGATTTATATT
TATATTAAAATAGTTAAGATGTAATTTTTTTTAGTTTTCTAAACCTTGCTGGTTGTGTGCATGGC
ATTTAAACTTGATGTCTAAGATTTTATTACAATAGAATGCGTTATCATGAGGGTAATTGTCGATA
AGTTGTTTATCTTCTATATTTCTCCGGTGCGATAGTAAGGGGTTCATAGTGTTGCTTCTGTTAAC
CTGTACAATTCATTTTATTTCATATGTGTAACGATTACATGCTGAAAAGATTAGCTTCTTTTAAG
TGTTCCTAAGTTTTTTCGTGGAAAATTAGGTTTATTTATTCATTGTTTTTCAAGTTAAAAGTGTT
GTTAAGATGTGCCTTTAAAAGAAGCGCTTCAAAAGAAGTACTTTTAGAAAGAGCTTTGAAAATAT
TTTTTCTATCAAATTGTTATGT
Found at i:149285 original size:6 final size:6
Alignment explanation
Indices: 149270--149319 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
149260 AAAAAATATT
* *
149270 ATAAAA ATAAAT ATAAAA ATAAAAA ATAAAA AT-AAA AT-AAA CTAAAA
1 ATAAAA ATAAAA ATAAAA AT-AAAA ATAAAA ATAAAA ATAAAA ATAAAA
149317 ATA
1 ATA
149320 GTTAAATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 9 0.24
6 23 0.61
7 6 0.16
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:149294 original size:19 final size:18
Alignment explanation
Indices: 149272--149310 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
149262 AAAATATTAT
*
149272 AAAAATAAATATAAAAATA
1 AAAAATAAAAAT-AAAATA
149291 AAAAATAAAAATAAAATA
1 AAAAATAAAAATAAAATA
149309 AA
1 AA
149311 CTAAAAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAAATAAAAATAAAATA
Found at i:149731 original size:134 final size:134
Alignment explanation
Indices: 149513--149868 Score: 385
Period size: 134 Copynumber: 2.7 Consensus size: 134
149503 AATCGAAATC
149513 GATTTTCTTCATTGCTCTTCAGGAAAACCAAATTTGAAAGAAGAAGAATCTGCTCCACTACTCTT
1 GATTTTCTTCATTGCTCTTCAGGAAAACCAAATTTGAAAGAAGAAGAATCTGCTCCACTACTCTT
** *
149578 TAGGGGAGATCAAACTCGAGAAAAATTTG-ATCCACTTCGTTGCTCTTCAGGGAAGATTGAATTG
66 TAGGGGAGATCAAACTCGAGAAAAATTTGTATCCACTTCACT-CTCTTCAGGAAAGATTGAATTG
149642 AACTT
130 AACTT
* * * * * * * * *
149647 GATTTTTTTCGTTTCTCTTCAGGAAGACCAAATTTGATAGATGAATAATCTGCTTCGCTACTCTT
1 GATTTTCTTCATTGCTCTTCAGGAAAACCAAATTTGAAAGAAGAAGAATCTGCTCCACTACTCTT
* * * *
149712 TAGGGGAGATCAGACTCGAGAAAAATTTGTATTCACTTCACTCTCTTCAGGAAAGATTAAATCAG
66 TAGGGGAGATCAAACTCGAGAAAAATTTGTATCCACTTCACTCTCTTCAGGAAAGATTGAAT-TG
*
149777 AA-TC
130 AACTT
* * * ** * * ** * * *
149781 AATTTGT-TTCACTGCTATTCAGGATTACCAAATCTAAAAGAAGAAGCGTATACTCCACTACTCC
1 GATTT-TCTTCATTGCTCTTCAGGAAAACCAAATTTGAAAGAAGAAGAATCTGCTCCACTACTCT
* *
149845 TTAGGAGAGATCAGACTCGAGAAA
65 TTAGGGGAGATCAAACTCGAGAAA
149869 TCTTTAATAT
Statistics
Matches: 182, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
134 169 0.93
135 13 0.07
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (134 bp):
GATTTTCTTCATTGCTCTTCAGGAAAACCAAATTTGAAAGAAGAAGAATCTGCTCCACTACTCTT
TAGGGGAGATCAAACTCGAGAAAAATTTGTATCCACTTCACTCTCTTCAGGAAAGATTGAATTGA
ACTT
Found at i:150201 original size:23 final size:23
Alignment explanation
Indices: 150172--150228 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
150162 AAATCCATAG
150172 TTTTCTTGAAATCTAGAAAATAT
1 TTTTCTTGAAATCTAGAAAATAT
150195 TTTTCTTGAAATCTAGAAAATAT
1 TTTTCTTGAAATCTAGAAAATAT
**
150218 TCATCTTGAAA
1 TTTTCTTGAAA
150229 GTGCAACGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.42
Consensus pattern (23 bp):
TTTTCTTGAAATCTAGAAAATAT
Found at i:150615 original size:45 final size:45
Alignment explanation
Indices: 150551--150775 Score: 212
Period size: 45 Copynumber: 5.1 Consensus size: 45
150541 TATTCTTTGT
* * *
150551 GAGAAAGTCAAAAAGGACAAAACTAAAAGATTGGCTTCTCTTCTC
1 GAGAAAGTCAAGAAGGACAACACTAAAAGATTGACTTCTCTTCTC
* * * *
150596 GAGAAAATCCAA-AATGACAACACTAAAAGAATGAATTCTCTT-TGC
1 GAGAAAGT-CAAGAAGGACAACACTAAAAGATTGACTTCTCTTCT-C
* *
150641 GAGAAAGTCAAGAAGGACAACACTAAAAGATTGACTCCTCTTCAC
1 GAGAAAGTCAAGAAGGACAACACTAAAAGATTGACTTCTCTTCTC
* * * *
150686 GAGAAAGTCAAG-AGTGACCATACTTAAAGATTGACTTCTCTTAAT-
1 GAGAAAGTCAAGAAG-GACAACACTAAAAGATTGACTTCTCTT-CTC
* * * *
150731 GAGAAAGTCAAG-A--ATAACACTAAAAGATTTACTCCTCTTCAC
1 GAGAAAGTCAAGAAGGACAACACTAAAAGATTGACTTCTCTTCTC
150773 GAG
1 GAG
150776 GGAGTCAATA
Statistics
Matches: 147, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
42 23 0.16
44 6 0.04
45 115 0.78
46 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (45 bp):
GAGAAAGTCAAGAAGGACAACACTAAAAGATTGACTTCTCTTCTC
Found at i:150657 original size:90 final size:90
Alignment explanation
Indices: 150544--150775 Score: 265
Period size: 90 Copynumber: 2.6 Consensus size: 90
150534 GGTTGACTAT
* * * *
150544 TCTTTGTGAGAAAGTCAAAAAGGACAAAACTAAAAGATTGGCTTCTCTTCTCGAGAAAATCCAA-
1 TCTTTGTGAGAAAGTCAAGAAGGACAAAACTAAAAGATTGACTCCTCTTCACGAGAAAAT-CAAG
150608 AATGACAACACTAAAAGAATGAATTC
65 AATGACAACACTAAAAGAATGAATTC
* * *
150634 TCTTTGCGAGAAAGTCAAGAAGGACAACACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGA
1 TCTTTGTGAGAAAGTCAAGAAGGACAAAACTAAAAGATTGACTCCTCTTCACGAGAAAATCAAGA
* * * * * *
150699 GTGACCATACTTAAAGATTGACTTC
66 ATGACAACACTAAAAGAATGAATTC
** * * *
150724 TCTTAATGAGAAAGTCAAG-A--ATAACACTAAAAGATTTACTCCTCTTCACGAG
1 TCTTTGTGAGAAAGTCAAGAAGGACAAAACTAAAAGATTGACTCCTCTTCACGAG
150776 GGAGTCAATA
Statistics
Matches: 123, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
87 30 0.24
89 4 0.03
90 89 0.72
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (90 bp):
TCTTTGTGAGAAAGTCAAGAAGGACAAAACTAAAAGATTGACTCCTCTTCACGAGAAAATCAAGA
ATGACAACACTAAAAGAATGAATTC
Found at i:150782 original size:42 final size:42
Alignment explanation
Indices: 150572--150828 Score: 164
Period size: 45 Copynumber: 6.0 Consensus size: 42
150562 AAAGGACAAA
* * * *
150572 ACTAAAAGATTGGCTTCTCTTCTCGAGAAAATCCAA-AATGACAAC
1 ACTAAAAGATTGACTCCTCTTCACGAGAAAGT-CAAGAAT---AAC
* * * ** *
150617 ACTAAAAGAATGAATTCTCTTTGCGAGAAAGTCAAGAAGGACAAC
1 ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAG-A--ATAAC
* *
150662 ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAGTGACCAT
1 ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAT-A--AC
* * * *
150707 ACTTAAAGATTGACTTCTCTTAATGAGAAAGTCAAGAATAAC
1 ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAC
* ** *
150749 ACTAAAAGATTTACTCCTCTTCACGAGGGAGTCAATAAT-A-
1 ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAC
* * ** *
150789 AC--AAATATTGACTTCTCTTCATTAGGAAGTCAAGAATAAC
1 ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAC
150829 TAAGATTGAC
Statistics
Matches: 167, Mismatches: 36, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
38 28 0.17
39 1 0.01
40 2 0.01
41 1 0.01
42 32 0.19
43 1 0.01
44 5 0.03
45 95 0.57
46 1 0.01
48 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (42 bp):
ACTAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGAATAAC
Found at i:150820 original size:38 final size:38
Alignment explanation
Indices: 150711--150845 Score: 144
Period size: 38 Copynumber: 3.4 Consensus size: 38
150701 GACCATACTT
* *
150711 AAAGATTGACTTCTCTTAATGAGAAAGTCAAGAATAACAC
1 AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAAT-A-AC
* * * * *
150751 TAAAAGATTTACTCCTCTTCACGAGGGAGTCAATAATAAC
1 --AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAAC
* *
150791 AAATATTGACTTCTCTTCATTAGGAAGTCAAGAATAAC
1 AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAAC
*
150829 TAAGATTGACTTCTCTT
1 AAAGATTGACTTCTCTT
150846 TACGATGGAG
Statistics
Matches: 77, Mismatches: 16, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
38 46 0.60
40 2 0.03
41 1 0.01
42 28 0.36
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (38 bp):
AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAAC
Found at i:150858 original size:38 final size:37
Alignment explanation
Indices: 150712--150860 Score: 127
Period size: 38 Copynumber: 3.8 Consensus size: 37
150702 ACCATACTTA
* * *
150712 AAGATTGACTTCTCTTAATGAGAAAGTCAAGAATAACACT
1 AAGATTGACTTCTCTTCACGAG-GAGTCAAGAAT-A-ACT
* * * *
150752 AAAAGATTTACTCCTCTTCACGAGGGAGTCAATAATAACA
1 --AAGATTGACTTCTCTTCACGA-GGAGTCAAGAATAACT
* **
150792 AATATTGACTTCTCTTCATTAGGAAGTCAAGAATAACT
1 AAGATTGACTTCTCTTCACGAGG-AGTCAAGAATAACT
*
150830 AAGATTGACTTCTCTTTACGATGGAGTCAAG
1 AAGATTGACTTCTCTTCACGA-GGAGTCAAG
150861 TTGAAGATTC
Statistics
Matches: 86, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
37 2 0.02
38 52 0.60
39 2 0.02
40 2 0.02
41 1 0.01
42 26 0.30
43 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.30
Consensus pattern (37 bp):
AAGATTGACTTCTCTTCACGAGGAGTCAAGAATAACT
Found at i:151979 original size:43 final size:43
Alignment explanation
Indices: 151908--152016 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
151898 CCCGGATGAA
* * * *
151908 ATGGGCCTTAAAAATGTCCTAACATTTATTATTTATTGCTGAT
1 ATGGGCCTTCAAAATGCCCCAACATTTATTATTTATTACTGAT
* *
151951 ATGGACCTTCAAAATGCCCCAACATTTATTATTTCTTACTGAT
1 ATGGGCCTTCAAAATGCCCCAACATTTATTATTTATTACTGAT
* *
151994 AAGGGTCTTCAAAAGTGCCCCAA
1 ATGGGCCTTCAAAA-TGCCCCAA
152017 TATTAATACT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
43 48 0.86
44 8 0.14
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (43 bp):
ATGGGCCTTCAAAATGCCCCAACATTTATTATTTATTACTGAT
Found at i:155234 original size:14 final size:14
Alignment explanation
Indices: 155215--155251 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
155205 TCATATTAAT
155215 ATGCAATGTGTATC
1 ATGCAATGTGTATC
155229 ATGCAATGTGTATC
1 ATGCAATGTGTATC
155243 ATGCAATGT
1 ATGCAATGT
155252 ATGACATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (14 bp):
ATGCAATGTGTATC
Found at i:160561 original size:15 final size:15
Alignment explanation
Indices: 160524--160575 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
160514 ACGTTATCTA
*
160524 TTTTTGTCTCTTTTTC
1 TTTTTCTCTC-TTTTC
* *
160540 GTGTTCTCTCTTTTC
1 TTTTTCTCTCTTTTC
*
160555 TTTTTCTTTCTTTTC
1 TTTTTCTCTCTTTTC
160570 TTTTTC
1 TTTTTC
160576 AAGTTTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 23 0.77
16 7 0.23
ACGTcount: A:0.00, C:0.21, G:0.06, T:0.73
Consensus pattern (15 bp):
TTTTTCTCTCTTTTC
Found at i:161114 original size:22 final size:22
Alignment explanation
Indices: 161088--161134 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
161078 AATTAAAAAC
* *
161088 AAAAAAAAATTAAAATTAAAATT
1 AAAAAATAATT-AAATAAAAATT
*
161111 AAAAAATAGTTAAATAAAAATT
1 AAAAAATAATTAAATAAAAATT
161133 AA
1 AA
161135 TATTAGCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAAAATAATTAAATAAAAATT
Found at i:161114 original size:23 final size:23
Alignment explanation
Indices: 161076--161134 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
161066 ATTAAAATAG
**
161076 AAAATTAAAAACAAAAAAAAATT
1 AAAATTAAAATTAAAAAAAAATT
* *
161099 AAAATTAAAATTAAAAAATAGTT
1 AAAATTAAAATTAAAAAAAAATT
*
161122 -AAATAAAAATTAA
1 AAAATTAAAATTAA
161135 TATTAGCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 12 0.39
23 19 0.61
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAATTAAAATTAAAAAAAAATT
Found at i:161768 original size:28 final size:29
Alignment explanation
Indices: 161737--161801 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
161727 TTAATTTTAA
*
161737 TTCGGTTAATAG-TTAAATTT-TTTCAAAG
1 TTCGGTTAATAGATT-AATTTGGTTCAAAG
*
161765 TTCGGTT-ATCGATTAATTTGGTTCAAAG
1 TTCGGTTAATAGATTAATTTGGTTCAAAG
161793 TT-GGTTAAT
1 TTCGGTTAAT
161802 TAACCGAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (29 bp):
TTCGGTTAATAGATTAATTTGGTTCAAAG
Found at i:164087 original size:152 final size:155
Alignment explanation
Indices: 163766--164103 Score: 439
Period size: 152 Copynumber: 2.2 Consensus size: 155
163756 TTTCTCCTTC
* * * **
163766 ATTTTAAGTCTATTTTTTTACCAAATTTGAATCATATGCTCTTAAACCATAGTAGAATACATGTG
1 ATTTTAAGTCTA-TTTTTTATCAAATTTGAATCACATACTCCAAAACCATAGTAGAATACATGTG
* *
163831 TACTTTCAATTCTTCTTTTAGATAACAATTTTTTTATTTTTCAATTTAGTCCTTCAATTTTTCAT
65 TACTTTCAATTCCTCTTTTAGAT-A-AA-TTATTTATTTTTCAATTTAGTCCTTCAATTTTTCAT
* *
163896 AATCTTCTTATTTCTTCAATTCGTCATTT
127 AATCTTCTTATTCCTTCAATTCATCATTT
* * * * *
163925 ATTTTAAGTCTGTTTTTTATCAAATTTGAGTCACATACTCCAAAATCATATTAGAATATATGTGT
1 ATTTTAAGTCTATTTTTTATCAAATTTGAATCACATACTCCAAAACCATAGTAGAATACATGTGT
* * * *
163990 ACTTTCAATTCCTCTTTTTGAT-AA-TATTT-TTTTTCAATTTAGTCTTTCAATTTTTTATATTC
66 ACTTTCAATTCCTCTTTTAGATAAATTATTTATTTTTCAATTTAGTCCTTCAATTTTTCATAATC
* *
164052 TTCTTATTCCTTCAATTTATGATTT
131 TTCTTATTCCTTCAATTCATCATTT
164077 ATTTTAAGTCTATTTTTTATCAAATTT
1 ATTTTAAGTCTATTTTTTATCAAATTT
164104 AAACCACGTG
Statistics
Matches: 158, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
152 77 0.49
153 4 0.03
155 2 0.01
158 64 0.41
159 11 0.07
ACGTcount: A:0.28, C:0.14, G:0.06, T:0.52
Consensus pattern (155 bp):
ATTTTAAGTCTATTTTTTATCAAATTTGAATCACATACTCCAAAACCATAGTAGAATACATGTGT
ACTTTCAATTCCTCTTTTAGATAAATTATTTATTTTTCAATTTAGTCCTTCAATTTTTCATAATC
TTCTTATTCCTTCAATTCATCATTT
Found at i:166484 original size:71 final size:71
Alignment explanation
Indices: 166306--166468 Score: 231
Period size: 71 Copynumber: 2.3 Consensus size: 71
166296 AAATTTACTA
**
166306 GTTTAATTACTTTTTAAGACCTTT-GACTTTTAAAATTAATGAAATCAAATTCTTAATCTCTTAA
1 GTTTAATTAC-TTTTAAGACCTTTAGA-TTTTAAAATTAATGAAATCAAACCCTTAATCTCTTAA
*
166370 TTTTTATG
64 TTCTTATG
* *
166378 GTTTAATTACTTTTAAGACCTTTAGATTTTAAAATTTATGAAATCAAACCCTTAA-CTCTTGATT
1 GTTTAATTACTTTTAAGACCTTTAGATTTTAAAATTAATGAAATCAAACCCTTAATCTCTTAATT
166442 CTTATG
66 CTTATG
*
166448 GTTTAATTACATTTTAGGACC
1 GTTTAATTAC-TTTTAAGACC
166469 CTATTTATTT
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
70 23 0.28
71 48 0.58
72 12 0.14
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.46
Consensus pattern (71 bp):
GTTTAATTACTTTTAAGACCTTTAGATTTTAAAATTAATGAAATCAAACCCTTAATCTCTTAATT
CTTATG
Found at i:169576 original size:54 final size:54
Alignment explanation
Indices: 169439--169677 Score: 180
Period size: 54 Copynumber: 4.5 Consensus size: 54
169429 GAGTTTTCTT
* * * * * * * *
169439 GGTCTTAGGAATTTGTTGTACTCCTCCAT-A-AAAGGAACGTTATAGTTTGATC
1 GGTCTTAGAAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTGACC
* * * ** * * *
169491 AGTCTTAGAAATTTACTCTACTCTTTTATAACAAATGAAGGGTAGAGCTTGACC
1 GGTCTTAGAAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTGACC
* ***
169545 GGTCTTAGAAATTTGCTCTACTCCTCCATAACAAAGGAATACTAGAGCTTGGTA
1 GGTCTTAGAAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTGACC
* * * * *
169599 GGCCTTCA-AAATTTGCTCTACTCTTCTATAATAAAGGGATGCTAGAGCTT-ACTC
1 GGTCTT-AGAAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTGAC-C
* * *
169653 GATCTTAAAAATTTGTTCTACTCCT
1 GGTCTTAGAAATTTGCTCTACTCCT
169678 TCATGTCAAA
Statistics
Matches: 143, Mismatches: 39, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
52 21 0.15
53 2 0.01
54 119 0.83
55 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (54 bp):
GGTCTTAGAAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTGACC
Found at i:169719 original size:108 final size:108
Alignment explanation
Indices: 169492--169728 Score: 246
Period size: 108 Copynumber: 2.2 Consensus size: 108
169482 AGTTTGATCA
* * * * *
169492 GTCTTAGAAATTTACTCTACTCTTTTATAACAAATGAAGGGTAGAGCTTGACCGGTCTTAGAAAT
1 GTCTTAGAAATTTACTCTACTCTTCTATAACAAAGGAAGGCTAGAGCTTGACCGATCTTAAAAAT
* * * *
169557 TTGCTCTACTCCTCCATAACAAAGGAATACTAGAGCTTGGTAG
66 TTGCTCTACTCCTCCATAACAAAAGAACACTAAAGCTAGGTAG
* * * * *
169600 GCCTTCA-AAATTTGCTCTACTCTTCTATAATAAAGGGATGCTAGAGCTT-ACTCGATCTTAAAA
1 GTCTT-AGAAATTTACTCTACTCTTCTATAACAAAGGAAGGCTAGAGCTTGAC-CGATCTTAAAA
* * ** *
169663 ATTTGTTCTACTCCTTCATGTCAAAAGAACACTAAAG-TAGGCTCG
64 ATTTGCTCTACTCCTCCATAACAAAAGAACACTAAAGCTAGG-TAG
*
169708 TTCTTAGAAATTTACTCTACT
1 GTCTTAGAAATTTACTCTACT
169729 TGTAACACCC
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
107 6 0.06
108 96 0.93
109 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (108 bp):
GTCTTAGAAATTTACTCTACTCTTCTATAACAAAGGAAGGCTAGAGCTTGACCGATCTTAAAAAT
TTGCTCTACTCCTCCATAACAAAAGAACACTAAAGCTAGGTAG
Found at i:171727 original size:64 final size:62
Alignment explanation
Indices: 171675--171828 Score: 231
Period size: 64 Copynumber: 2.4 Consensus size: 62
171665 TTCACTAAGG
*
171675 GTGCATCGATGCATAAAATGCATTCGATG-TTTCA-AACAAGCCTGAGTGCATCGATGCATGGTC
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAA-AA-CCCGAGTGCATCGATGCATGG--
*
171738 T
62 A
171739 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCGAGTGCATCGATGCATGGAA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCGAGTGCATCGATGCATGG-A
171802 GTGCATCGATGCATAAAATGCATTCGA
1 GTGCATCGATGCATAAAATGCATTCGA
171829 AATGGTGAGT
Statistics
Matches: 85, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
63 27 0.32
64 49 0.58
65 7 0.08
66 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (62 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCGAGTGCATCGATGCATGGA
Found at i:171828 original size:18 final size:18
Alignment explanation
Indices: 171785--171824 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
171775 AAAACCCGAG
* *
171785 TGCATCGATGCATGGAAG
1 TGCATCGATGCATGAAAA
171803 TGCATCGATGCAT-AAAA
1 TGCATCGATGCATGAAAA
171820 TGCAT
1 TGCAT
171825 TCGAAATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (18 bp):
TGCATCGATGCATGAAAA
Found at i:171863 original size:20 final size:20
Alignment explanation
Indices: 171834--171871 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
171824 TTCGAAATGG
*
171834 TGAGTGCATCGATGCATCTA
1 TGAGTACATCGATGCATCTA
*
171854 TGAGTACATCGGTGCATC
1 TGAGTACATCGATGCATC
171872 CCTTCACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (20 bp):
TGAGTACATCGATGCATCTA
Found at i:172904 original size:27 final size:27
Alignment explanation
Indices: 172865--172917 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
172855 AACTGGTGCC
* *
172865 GGAGGAGGTGGAGCACGAGAAGAACTA
1 GGAGCAGGAGGAGCACGAGAAGAACTA
* *
172892 GGAGCAGGAGGAGCTCGTGAAGAACT
1 GGAGCAGGAGGAGCACGAGAAGAACT
172918 GGCTCCCGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.43, T:0.09
Consensus pattern (27 bp):
GGAGCAGGAGGAGCACGAGAAGAACTA
Found at i:174536 original size:21 final size:21
Alignment explanation
Indices: 174512--174565 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
174502 GTCTTCATGA
174512 TGTATCGATGCACCATTATAG
1 TGTATCGATGCACCATTATAG
*
174533 TGTATCGATGCACCTTTATAG
1 TGTATCGATGCACCATTATAG
174554 TGTATCGATGCA
1 TGTATCGATGCA
174566 TTATGCACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (21 bp):
TGTATCGATGCACCATTATAG
Found at i:186008 original size:18 final size:18
Alignment explanation
Indices: 185985--186021 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
185975 TAAAACCCTG
185985 AGTGCATCGATGCATGGA
1 AGTGCATCGATGCATGGA
186003 AGTGCATCGATGCATGGA
1 AGTGCATCGATGCATGGA
186021 A
1 A
186022 ATGTATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.22
Consensus pattern (18 bp):
AGTGCATCGATGCATGGA
Found at i:186024 original size:65 final size:64
Alignment explanation
Indices: 185876--186031 Score: 190
Period size: 64 Copynumber: 2.4 Consensus size: 64
185866 TGCACTAAGG
* * * **
185876 GTGCATCGATGCATAAAATGCATTTGATGTTTCAAACAAGCATGAGTGTATCGATGCATGGTCT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAACAACCATGAGTGCATCGATGCATGGTAA
* *
185940 GTGCCTCGATGCATAAAATGCATTCGATGTTTTCATAA-AACCCTGAGTGCATCGATGCATGG-A
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCA-AACAACCATGAGTGCATCGATGCATGGTA
186003 A
64 A
* *
186004 GTGCATCGATGCATGGAAATGTATTCGA
1 GTGCATCGATGCAT-AAAATGCATTCGA
186032 AATGTGAGTG
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
64 40 0.51
65 37 0.47
66 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAAACAACCATGAGTGCATCGATGCATGGTAA
Found at i:186061 original size:20 final size:20
Alignment explanation
Indices: 186036--186073 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
186026 ATTCGAAATG
*
186036 TGAGTGTATCGATGCATCTA
1 TGAGTGCATCGATGCATCTA
186056 TGAGTGCATCGATGCATC
1 TGAGTGCATCGATGCATC
186074 CCTTCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
TGAGTGCATCGATGCATCTA
Found at i:197393 original size:42 final size:41
Alignment explanation
Indices: 197279--197572 Score: 163
Period size: 41 Copynumber: 7.1 Consensus size: 41
197269 TTTTTTCAAA
* * * * * *
197279 CATCATGCTCGAAGGTCTTACAGATGGCCCGAAGAACTTAT
1 CATCTTGCTCGAAAGACTTACTGATGGCCCGAAGGATTTAT
* ** * * *
197320 C-CCTCTGCTTAAAAGACATACCGA-GGACTCGAAGGATTTAAT
1 CATCT-TGCTCGAAAGACTTACTGATGG-CCCGAAGGATTT-AT
* * * * *
197362 CATCATGCTCGAAAGACTAACTGATGGCTCGAATGACTTAT
1 CATCTTGCTCGAAAGACTTACTGATGGCCCGAAGGATTTAT
* ** * * *
197403 CA-CTTTGTTAAAAAGACTTACAGATGACCCAAATGG-TTTAAT
1 CATC-TTGCTCGAAAGACTTACTGATGGCCCGAA-GGATTT-AT
* * * *
197445 CATCATGCTCGAAAGACTTACTAATGGCCCGAATGACTTAT
1 CATCTTGCTCGAAAGACTTACTGATGGCCCGAAGGATTTAT
* *
197486 CA-CTTTGCTCAAAAGACTTA-T-ATAGGACCTGAAGGATTTGAT
1 CATC-TTGCTCGAAAGACTTACTGAT-GG-CCCGAAGGATTT-AT
*
197528 CATCTTGCTCGAAAGACTTACTGATGGCCC-AGAGGACTTAT
1 CATCTTGCTCGAAAGACTTACTGATGGCCCGA-AGGATTTAT
197569 CATC
1 CATC
197573 GAGAAACCTT
Statistics
Matches: 186, Mismatches: 49, Indels: 36
0.69 0.18 0.13
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 84 0.45
42 82 0.44
43 8 0.04
44 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (41 bp):
CATCTTGCTCGAAAGACTTACTGATGGCCCGAAGGATTTAT
Found at i:197418 original size:83 final size:81
Alignment explanation
Indices: 197279--197570 Score: 320
Period size: 83 Copynumber: 3.5 Consensus size: 81
197269 TTTTTTCAAA
* * * * * * *
197279 CATCATGCTCGAAGGTCTTACAGATGGCCCGAA-GAACTTATCCCTCTGCTTAAAAGACATACCG
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAATG-ACTTATCACTTTG-TTAAAAGACTTACAG
197343 AGGACTCGAAGGATTTAAT
64 AGGAC-CGAAGGATTTAAT
* *
197362 CATCATGCTCGAAAGACTAACTGATGGCTCGAATGACTTATCACTTTGTTAAAAAGACTTACAGA
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTATCACTTTGTT-AAAAGACTTACAGA
* *
197427 TGACCCAAATGG-TTTAAT
65 GGA-CCGAA-GGATTTAAT
* * * *
197445 CATCATGCTCGAAAGACTTACTAATGGCCCGAATGACTTATCACTTTGCTCAAAAGACTTATATA
1 CATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTATCACTTTG-TTAAAAGACTTACAGA
*
197510 GGACCTGAAGGATTTGAT
65 GGACC-GAAGGATTTAAT
* *
197528 CATCTTGCTCGAAAGACTTACTGATGGCCC-AGAGGACTTATCA
1 CATCATGCTCGAAAGACTTACTGATGGCCCGA-ATGACTTATCA
197571 TCGAGAAACC
Statistics
Matches: 178, Mismatches: 23, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
82 7 0.04
83 166 0.93
84 5 0.03
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (81 bp):
CATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTATCACTTTGTTAAAAGACTTACAGAG
GACCGAAGGATTTAAT
Found at i:197690 original size:74 final size:74
Alignment explanation
Indices: 197567--198001 Score: 563
Period size: 74 Copynumber: 5.9 Consensus size: 74
197557 CAGAGGACTT
* * * *
197567 ATCATCGAGAAACCTTTGAAAATCAAACTT-GTCTTCTTCAAAAATTCATTTGAAAACATCATAT
1 ATCATCAAGAAACCTCTGAAAATCAGACTTAG-CTTCTTTAAAAATTCATTTGAAAACATCATAT
* *
197631 CAATAAATTA
65 CAATCAAGTA
*
197641 ATCATCAAGAAACCTCTGAAAATTAGACTT-GACTTCTTTAAAACA-TCATTTGAAAACATCATA
1 ATCATCAAGAAACCTCTGAAAATCAGACTTAG-CTTCTTTAAAA-ATTCATTTGAAAACATCATA
197704 TCAATCAAGTA
64 TCAATCAAGTA
* ** * * *
197715 ATCACCAAGAAACCTCAAAAAAATTAGACTTAGGTTATTTAAAAATTCATTTGAAAACATCATAT
1 ATCATCAAGAAACCTC-TGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTGAAAACATCATAT
*
197780 CAATCAATTA
65 CAATCAAGTA
* * **
197790 ATCATCAAGAAACCTCTGAAAATCATACTTAGCTTCTTTAAAAATTCATTTCAAAACATCATGCC
1 ATCATCAAGAAACCTCTGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTGAAAACATCATATC
197855 AATCAAGTA
66 AATCAAGTA
* * * *
197864 ATCATCAAGAAACCTCT-AAAACTTAGAATTAGCTTCTTTAAAAATTTATTTGAAAACATTATAT
1 ATCATCAAGAAACCTCTGAAAA-TCAGACTTAGCTTCTTTAAAAATTCATTTGAAAACATCATAT
197928 CAATCAAGTA
65 CAATCAAGTA
* * * *
197938 ATCATTAAGAAACCTCTGAAAATCATACTTAGATTCTTTAAAACTTCATTTGAAAACATCATAT
1 ATCATCAAGAAACCTCTGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTGAAAACATCATAT
198002 TAGTTGGGTA
Statistics
Matches: 314, Mismatches: 41, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
73 4 0.01
74 240 0.76
75 69 0.22
76 1 0.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (74 bp):
ATCATCAAGAAACCTCTGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTGAAAACATCATATC
AATCAAGTA
Found at i:197858 original size:149 final size:148
Alignment explanation
Indices: 197606--198000 Score: 587
Period size: 149 Copynumber: 2.7 Consensus size: 148
197596 TGTCTTCTTC
* * *
197606 AAAAATTCATTTGAAAACATCATATCAATAAATTAATCATCAAGAAACCTCTGAAAATTAGACTT
1 AAAAATTCATTTGAAAACATCATATCAATCAATTAATCATCAAGAAACCTCTGAAAATCATACTT
*
197671 -GACTTCTTTAAAACA-TCATTTGAAAACATCATATCAATCAAGTAATCACCAAGAAACCTCAAA
66 AG-CTTCTTTAAAA-ATTCATTTGAAAACATCATACCAATCAAGTAATCACCAAGAAACCTC-AA
* *
197734 AAAATTAGACTTAGGTTATTT
128 AAAATTAGAATTAGCTTATTT
197755 AAAAATTCATTTGAAAACATCATATCAATCAATTAATCATCAAGAAACCTCTGAAAATCATACTT
1 AAAAATTCATTTGAAAACATCATATCAATCAATTAATCATCAAGAAACCTCTGAAAATCATACTT
* * * *
197820 AGCTTCTTTAAAAATTCATTTCAAAACATCATGCCAATCAAGTAATCATCAAGAAACCTCTAAAA
66 AGCTTCTTTAAAAATTCATTTGAAAACATCATACCAATCAAGTAATCACCAAGAAACCTCAAAAA
* *
197885 CTTAGAATTAGCTTCTTT
131 ATTAGAATTAGCTTATTT
* * * *
197903 AAAAATTTATTTGAAAACATTATATCAATCAAGTAATCATTAAGAAACCTCTGAAAATCATACTT
1 AAAAATTCATTTGAAAACATCATATCAATCAATTAATCATCAAGAAACCTCTGAAAATCATACTT
* *
197968 AGATTCTTTAAAACTTCATTTGAAAACATCATA
66 AGCTTCTTTAAAAATTCATTTGAAAACATCATA
198001 TTAGTTGGGT
Statistics
Matches: 224, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
148 109 0.49
149 114 0.51
150 1 0.00
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.31
Consensus pattern (148 bp):
AAAAATTCATTTGAAAACATCATATCAATCAATTAATCATCAAGAAACCTCTGAAAATCATACTT
AGCTTCTTTAAAAATTCATTTGAAAACATCATACCAATCAAGTAATCACCAAGAAACCTCAAAAA
ATTAGAATTAGCTTATTT
Found at i:200742 original size:24 final size:24
Alignment explanation
Indices: 200684--200785 Score: 125
Period size: 24 Copynumber: 4.3 Consensus size: 24
200674 GAGTCGAGGG
* *
200684 TTCTACGCGGTCTTTTGGGACAAA
1 TTCTACGCGGTCCTTCGGGACAAA
* * *
200708 -TCTATGTGGTCATTCGGGACAAA
1 TTCTACGCGGTCCTTCGGGACAAA
*
200731 TTCTACGCGGTCCTTCGTGACAAA
1 TTCTACGCGGTCCTTCGGGACAAA
**
200755 TTCTACGCGGTCCTTCATGACAAA
1 TTCTACGCGGTCCTTCGGGACAAA
200779 TTCTACG
1 TTCTACG
200786 TGGCACTTCA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
23 19 0.28
24 49 0.72
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.31
Consensus pattern (24 bp):
TTCTACGCGGTCCTTCGGGACAAA
Found at i:200920 original size:19 final size:20
Alignment explanation
Indices: 200888--200926 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
200878 ATGGGCTAAA
*
200888 TAAACCAATGGATAT-GAAT
1 TAAACAAATGGATATAGAAT
*
200907 TAAACAAATTGATATAGAAT
1 TAAACAAATGGATATAGAAT
200927 GAAAAGTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (20 bp):
TAAACAAATGGATATAGAAT
Found at i:204921 original size:2 final size:2
Alignment explanation
Indices: 204914--204946 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
204904 GACATTTTTC
204914 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
204947 AAACATGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:205391 original size:55 final size:55
Alignment explanation
Indices: 205330--205850 Score: 742
Period size: 55 Copynumber: 9.5 Consensus size: 55
205320 TTCCACGGTT
* * * * * *
205330 TTGCACACATAGTGTCGATACGGTAATTCACAAACTCATTATGAATTACATGGGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* * *
205385 TTGCACACATAGCGCCAATAC-AAAATTTCATAAACTCATTATCAATTTCGTGGGG
1 TTGCACACATAGTGCCAATACGGAAA-TTCATAAACTCATTATGAATTTCGTGGGG
** *
205440 TTGCACACATAGTGCCAATACATAAATTCATAAACTCATTATGAATTTCGTGAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* *
205495 TTACACATATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* * * * *
205550 TAGCACACATAGTACCAATACAGAAATTCATAAACTCATTATGAATTTTGTGAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* * * * *
205605 ATGCACACATAGTGCCAATACGGAAATTCATGAACTCGTTATGAATTTCATGAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* *
205660 TTGCACACATAGTGCCAATATGGAAATTCATAAACTCATTATGAATTTCGCGGGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* *
205715 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATAAATTTTGTGGGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
* *
205770 TTGCACACATAGTG-CAATACGGAAATTCATAAACTCGTTATGAATTTCATGGGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
205824 TTGC-CACATAGTGCCAATACGGAAATT
1 TTGCACACATAGTGCCAATACGGAAATT
205851 TCAACATATA
Statistics
Matches: 415, Mismatches: 48, Indels: 7
0.88 0.10 0.01
Matches are distributed among these distances:
53 9 0.02
54 55 0.13
55 348 0.84
56 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (55 bp):
TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCGTGGGG
Found at i:209465 original size:21 final size:20
Alignment explanation
Indices: 209421--209503 Score: 141
Period size: 20 Copynumber: 4.2 Consensus size: 20
209411 CCGTTAGACA
209421 GGGGGGAATCGGTACCCCCT
1 GGGGGGAATCGGTACCCCCT
209441 -GGGGGAATCGGTACCCCCT
1 GGGGGGAATCGGTACCCCCT
209460 GGGGGGGAATCGGTACCCCCT
1 -GGGGGGAATCGGTACCCCCT
*
209481 GGGGGGAATCCGTACCCCCT
1 GGGGGGAATCGGTACCCCCT
209501 GGG
1 GGG
209504 CAATCTGATT
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
19 19 0.32
20 22 0.37
21 19 0.32
ACGTcount: A:0.14, C:0.30, G:0.41, T:0.14
Consensus pattern (20 bp):
GGGGGGAATCGGTACCCCCT
Found at i:211457 original size:3 final size:3
Alignment explanation
Indices: 211449--211486 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
211439 TACGTCCTCA
* *
211449 TTC TTC TTC TTC TTC TTC TTC TTG TTT TTC TTC -TC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
211487 CCTTTCTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.00, C:0.29, G:0.03, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:212940 original size:19 final size:19
Alignment explanation
Indices: 212896--212995 Score: 94
Period size: 20 Copynumber: 5.1 Consensus size: 19
212886 GTTAGACAGA
*
212896 GGGGAATCGGTATCCCCTGGG
1 GGGGAATCTGT-TCCCCT-GG
*
212917 GGGGAATCTGTTCCCCTAG
1 GGGGAATCTGTTCCCCTGG
*
212936 GGGGAATC-GATACCCCTGG
1 GGGGAATCTG-TTCCCCTGG
212955 GGGGAATCTGTTCCCCCTGG
1 GGGGAATCTGTT-CCCCTGG
* * *
212975 GAGGAATATGTACCCCCTGG
1 GGGGAATCTGT-TCCCCTGG
212995 G
1 G
212996 TAATCTGATT
Statistics
Matches: 67, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
18 1 0.01
19 25 0.37
20 31 0.46
21 10 0.15
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (19 bp):
GGGGAATCTGTTCCCCTGG
Found at i:212966 original size:38 final size:40
Alignment explanation
Indices: 212896--212970 Score: 127
Period size: 38 Copynumber: 1.9 Consensus size: 40
212886 GTTAGACAGA
*
212896 GGGGAATCGGTATCCCCTGGGGGGGAATCTGTTCCCCTAG
1 GGGGAATCGATATCCCCTGGGGGGGAATCTGTTCCCCTAG
212936 GGGGAATCGATA-CCCCT-GGGGGGAATCTGTTCCCC
1 GGGGAATCGATATCCCCTGGGGGGGAATCTGTTCCCC
212971 CTGGGAGGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 18 0.53
39 5 0.15
40 11 0.32
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (40 bp):
GGGGAATCGATATCCCCTGGGGGGGAATCTGTTCCCCTAG
Found at i:212989 original size:39 final size:39
Alignment explanation
Indices: 212896--212995 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 39
212886 GTTAGACAGA
* *
212896 GGGGAATCGGTATCCCCTGGGGGGGAATCTGTTCCCCTAG
1 GGGGAATCGATACCCCCT-GGGGGGAATCTGTTCCCCTAG
212936 GGGGAATCGATA-CCCCTGGGGGGAATCTGTTCCCCCT-G
1 GGGGAATCGATACCCCCTGGGGGGAATCTGTT-CCCCTAG
*
212974 GGAGGAATATG-TACCCCCTGGG
1 GG-GGAAT-CGATACCCCCTGGG
212996 TAATCTGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
38 17 0.31
39 17 0.31
40 20 0.37
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (39 bp):
GGGGAATCGATACCCCCTGGGGGGAATCTGTTCCCCTAG
Found at i:214817 original size:21 final size:21
Alignment explanation
Indices: 214793--214852 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
214783 ATGCCAAAGT
*
214793 AAAATGAATAGATGCAAATGC
1 AAAATGAATAAATGCAAATGC
*
214814 AAAAGGTAA-AAATGCAAATGC
1 AAAATG-AATAAATGCAAATGC
* *
214835 AAAATGCATATATGCAAA
1 AAAATGAATAAATGCAAA
214853 AGGTACTGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 29 0.91
22 2 0.06
ACGTcount: A:0.55, C:0.10, G:0.17, T:0.18
Consensus pattern (21 bp):
AAAATGAATAAATGCAAATGC
Found at i:214840 original size:13 final size:15
Alignment explanation
Indices: 214822--214853 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
214812 GCAAAAGGTA
214822 AAAATGCA-A-ATGC
1 AAAATGCATATATGC
214835 AAAATGCATATATGC
1 AAAATGCATATATGC
214850 AAAA
1 AAAA
214854 GGTACTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 1 0.06
15 8 0.47
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (15 bp):
AAAATGCATATATGC
Found at i:225958 original size:21 final size:21
Alignment explanation
Indices: 225918--225960 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
225908 AAAACAAAAT
* *
225918 ACAAGAAATTAGTAAATTAAA
1 ACAAGAAATAAATAAATTAAA
*
225939 ACAAGAAATAAATAAGTTAAA
1 ACAAGAAATAAATAAATTAAA
225960 A
1 A
225961 TTCAACTAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.65, C:0.05, G:0.09, T:0.21
Consensus pattern (21 bp):
ACAAGAAATAAATAAATTAAA
Found at i:226171 original size:19 final size:16
Alignment explanation
Indices: 226127--226160 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
226117 TATAACTCAA
226127 GAAACTCATCATAAAT
1 GAAACTCATCATAAAT
226143 GAAACTCATCATAAAT
1 GAAACTCATCATAAAT
226159 GA
1 GA
226161 GACTTACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.24
Consensus pattern (16 bp):
GAAACTCATCATAAAT
Done.