genome.fa.s174.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000174.1 Hibiscus syriacus cultivar Beakdansim tig00000305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116205

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3776--3820	22	2.0	22	82	0	54	62	2	6	28	1.33
3820--3854	5	7.2	5	90	6	54	62	0	14	22	1.31
3801--3854	19	2.8	19	76	20	51	64	0	11	24	1.25
9039--9079	21	2.0	21	100	0	82	7	24	29	39	1.82
9329--10140	417	2.0	414	92	1	1371	40	10	16	31	1.83
10478--10520	21	1.9	24	86	13	65	69	4	9	16	1.31
19652--19685	3	11.7	3	93	6	61	29	0	0	70	0.87
19646--19691	12	3.8	12	76	23	51	28	0	0	71	0.86
19732--19771	14	2.6	15	88	11	55	15	5	0	80	0.88
19781--19820	21	1.9	21	94	0	71	15	2	7	75	1.14
19837--19882	22	2.3	19	82	14	56	26	2	0	71	0.97
21730--21805	37	2.1	37	100	0	152	31	25	7	35	1.84
22627--22842	95	2.2	97	88	4	312	31	17	18	32	1.94
23882--24420	240	2.2	240	90	0	844	33	23	18	25	1.97
24259--24465	110	1.9	110	94	0	369	32	24	19	23	1.97
24553--24784	124	1.9	124	87	1	340	34	25	14	25	1.94
24865--25141	84	3.3	84	84	2	340	33	22	19	24	1.97
24880--25233	169	2.1	167	79	8	362	33	21	17	27	1.96
26836--26877	20	2.1	20	86	8	59	28	2	0	69	1.01
26930--26971	16	2.6	16	88	11	59	19	7	0	73	1.05
26948--27031	8	10.4	8	72	10	55	17	2	2	77	0.99
26982--27032	19	2.6	21	82	17	74	15	0	3	80	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26980--27069	14	5.7	15	71	17	65	18	4	2	74	1.09
27763--27831	36	1.9	36	94	2	122	33	5	11	49	1.63
28645--28699	20	2.7	20	81	13	67	36	1	0	61	1.06
28645--28698	21	2.6	22	85	8	69	35	1	0	62	1.06
30775--30810	16	2.2	16	100	0	72	41	22	19	16	1.90
31065--31114	9	5.2	9	77	13	55	2	12	6	80	0.98
34601--34641	13	3.1	13	82	6	55	56	0	2	41	1.13
36001--36083	3	27.0	3	80	4	94	59	1	0	39	1.05
36433--36561	40	3.5	36	89	9	199	19	21	10	48	1.78
36503--37238	113	6.5	113	92	0	1154	28	19	14	37	1.91
38151--38517	94	4.0	92	91	5	554	35	20	12	31	1.90
39882--39944	8	7.4	8	81	13	72	0	19	0	80	0.70
39893--39937	4	10.8	4	85	4	54	0	17	0	82	0.68
39882--39944	18	3.6	17	87	10	92	0	19	0	80	0.70
39885--39944	12	5.2	11	78	15	59	0	18	0	81	0.69
39891--39938	13	3.8	13	84	13	64	0	16	0	83	0.65
39882--39941	22	2.7	23	80	17	81	0	18	0	81	0.69
46965--46996	15	2.1	15	94	0	55	46	9	18	25	1.79
50339--50394	26	2.0	28	83	16	73	48	1	3	46	1.30
50983--51023	13	3.1	13	82	6	55	56	0	2	41	1.13
51972--52007	15	2.4	15	90	0	54	0	13	5	80	0.88
52406--52482	3	25.0	3	81	5	82	58	1	0	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60568--60597	15	2.0	15	100	0	60	60	13	13	13	1.60
61164--61215	26	2.0	26	88	3	77	48	15	15	21	1.81
61164--61216	27	2.0	27	85	7	72	49	15	15	20	1.80
61372--61400	2	14.5	2	100	0	58	48	0	0	51	1.00
61473--61525	12	4.6	11	80	13	54	20	1	0	77	0.87
61482--61525	6	7.3	6	82	10	54	20	2	0	77	0.88
67461--67549	14	6.6	14	72	16	55	41	4	2	51	1.34
67462--67704	23	10.3	23	76	16	196	40	4	4	50	1.43
67510--67848	37	9.0	37	85	8	443	40	4	5	50	1.44
67471--67837	8	49.5	8	63	22	70	40	4	4	50	1.43
67556--67750	23	8.7	23	75	14	133	39	5	5	49	1.48
67737--67837	22	4.6	22	69	16	84	40	1	4	52	1.34
67471--67879	14	31.9	13	69	17	216	40	4	5	50	1.45
70095--70454	173	2.1	173	92	1	596	37	18	4	39	1.71
70696--70779	41	2.0	41	97	0	159	16	30	20	32	1.95
70924--70967	23	1.9	23	100	0	88	25	40	25	9	1.84
71044--71128	34	2.5	34	90	0	134	35	22	24	17	1.95
71181--71237	30	1.9	30	89	7	89	31	33	21	14	1.92
72130--72161	11	2.8	12	86	13	50	40	0	0	59	0.97
72318--72390	10	7.2	10	81	9	67	63	1	0	35	1.04
72327--72364	16	2.4	16	87	12	53	68	2	0	28	1.03
72366--72393	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72985--73041	24	2.4	24	82	2	71	49	17	22	10	1.77
73377--73432	2	29.5	2	89	10	91	48	0	0	51	1.00
94930--94971	22	2.0	21	85	4	57	26	9	7	57	1.56
94927--94978	22	2.5	19	81	12	50	26	9	7	55	1.59
97795--98106	49	6.4	49	82	2	367	25	13	22	38	1.91
97795--98106	98	3.2	98	85	0	437	25	13	22	38	1.91
97795--98125	147	2.2	147	85	1	428	25	13	22	38	1.91
101099--101150	23	2.3	23	80	12	63	51	0	1	46	1.12
112112--112141	2	15.0	2	100	0	60	50	0	0	50	1.00
115457--115487	16	1.9	16	100	0	62	19	25	12	41	1.87
115523--115553	16	1.9	16	93	0	53	29	16	6	48	1.70
115646--115684	20	2.0	20	84	0	51	48	0	2	48	1.15

Tables:   1

The End!