Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001740.1 Hibiscus syriacus cultivar Beakdansim tig00003523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62261
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:4140 original size:17 final size:19
Alignment explanation
Indices: 4107--4145 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
4097 TTATATAACT
4107 TATAGAACATTAAATA-TAA
1 TATAGAACA-TAAATATTAA
4126 TATAGAACA-AAATATTAA
1 TATAGAACATAAATATTAA
4144 TA
1 TA
4146 ATACATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 5 0.26
19 9 0.47
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
TATAGAACATAAATATTAA
Found at i:4689 original size:24 final size:23
Alignment explanation
Indices: 4644--4695 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
4634 CATAATTCAA
* *
4644 GTCAAGTACAAATCAGAGTCCAT
1 GTCAAGTACAAATCAGAATCCAG
*
4667 GTCAAGTATCATATCAGAATCCAG
1 GTCAAGTA-CAAATCAGAATCCAG
4691 GTCAA
1 GTCAA
4696 AAATCAGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (23 bp):
GTCAAGTACAAATCAGAATCCAG
Found at i:4701 original size:24 final size:24
Alignment explanation
Indices: 4655--4701 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
4645 TCAAGTACAA
* * **
4655 ATCAGAGTCCATGTCAAGTATCAT
1 ATCAGAATCCAGGTCAAAAATCAT
4679 ATCAGAATCCAGGTCAAAAATCA
1 ATCAGAATCCAGGTCAAAAATCA
4702 GATAAACTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (24 bp):
ATCAGAATCCAGGTCAAAAATCAT
Found at i:5474 original size:29 final size:29
Alignment explanation
Indices: 5442--5523 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
5432 CACCTTTTTC
* *
5442 TGAATAAATTCCCAAAATATCACCAAAAT
1 TGAATTAATTCCCAGAATATCACCAAAAT
5471 TGAATTAATTCCCAGAATATCACCAAAAT
1 TGAATTAATTCCCAGAATATCACCAAAAT
*
5500 CGAATTAATTCCCAGAATATCACC
1 TGAATTAATTCCCAGAATATCACC
5524 GATCAACGGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (29 bp):
TGAATTAATTCCCAGAATATCACCAAAAT
Found at i:11496 original size:14 final size:15
Alignment explanation
Indices: 11476--11556 Score: 75
Period size: 14 Copynumber: 5.7 Consensus size: 15
11466 CCGGTCTGAA
11476 CTGAGTCAACTCGAT
1 CTGAGTCAACTCGAT
11491 -TGAGTCAACTC-AT
1 CTGAGTCAACTCGAT
* *
11504 CTTAGTTAAC-CTGAAT
1 CTGAGTCAACTC-G-AT
11520 -TGAGTCAACTCG-T
1 CTGAGTCAACTCGAT
*
11533 CTGAGTCAAATCG-T
1 CTGAGTCAACTCGAT
11547 CTGAGTCAAC
1 CTGAGTCAAC
11557 CAATTGACTT
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
13 4 0.07
14 39 0.72
15 8 0.15
16 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (15 bp):
CTGAGTCAACTCGAT
Found at i:24772 original size:29 final size:29
Alignment explanation
Indices: 24708--24765 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
24698 CAATAGAATG
24708 AAATAAATACAACATACAAATTAGAAACC
1 AAATAAATACAACATACAAATTAGAAACC
*
24737 AAATAAATACAAGATACAAATTAGAAACC
1 AAATAAATACAACATACAAATTAGAAACC
24766 GATTAAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.62, C:0.16, G:0.05, T:0.17
Consensus pattern (29 bp):
AAATAAATACAACATACAAATTAGAAACC
Found at i:26372 original size:32 final size:32
Alignment explanation
Indices: 26315--26403 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
26305 GCCGGAACTC
** *
26315 GGAAGGGGAAGATCGGCCATAGAAGTCACTAG
1 GGAAGGGGAAGATCGGCCGGAGAAGTCACGAG
* **
26347 GGAAGGGGAAGATCGGCCGGCGAAGTGGCGAG
1 GGAAGGGGAAGATCGGCCGGAGAAGTCACGAG
* * *
26379 GGAA-AGGAAGATCGGCAGGTGAAGT
1 GGAAGGGGAAGATCGGCCGGAGAAGT
26404 GAAGTCACCA
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
31 18 0.38
32 30 0.62
ACGTcount: A:0.31, C:0.13, G:0.45, T:0.10
Consensus pattern (32 bp):
GGAAGGGGAAGATCGGCCGGAGAAGTCACGAG
Found at i:29653 original size:2 final size:2
Alignment explanation
Indices: 29646--29676 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
29636 TCTTTGAACT
29646 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29677 AGAAGTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:52350 original size:2 final size:2
Alignment explanation
Indices: 52343--52383 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
52333 CTTATTTTCT
52343 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
52384 CGATAAAGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:52591 original size:23 final size:23
Alignment explanation
Indices: 52565--52610 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
52555 TCTCATTCAT
52565 TTATTTATATTTATTATT-TTTAA
1 TTATTTATATTTA-TATTGTTTAA
52588 TTATTTATATTTATATTGTTTAA
1 TTATTTATATTTATATTGTTTAA
52611 AATTAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
TTATTTATATTTATATTGTTTAA
Found at i:56226 original size:20 final size:19
Alignment explanation
Indices: 56203--56260 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
56193 GAACTCTAAT
56203 TTCGCAATACAGTTTCCAAA
1 TTCGCAAT-CAGTTTCCAAA
* *
56223 TTCGCAACGCGATTTTCCCAAA
1 TTCGCAA-TC-AGTTT-CCAAA
56245 TTCGCAACTCAGTTTC
1 TTCGCAA-TCAGTTTC
56261 TGCAATCGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
20 9 0.29
21 8 0.26
22 14 0.45
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (19 bp):
TTCGCAATCAGTTTCCAAA
Found at i:56324 original size:20 final size:20
Alignment explanation
Indices: 56289--56480 Score: 138
Period size: 20 Copynumber: 9.4 Consensus size: 20
56279 TTCTTTCTCG
56289 CACGATTTTCCAAATTCGCAA
1 CACGATTTT-CAAATTCGCAA
*
56310 CGCGATTTTCAAATTCGCAA
1 CACGATTTTCAAATTCGCAA
*
56330 CACGTAATTTCAAATTCGCAA
1 CACG-ATTTTCAAATTCGCAA
* *
56351 CTCGA-TTTCTGAATTCGCAA
1 CACGATTTTC-AAATTCGCAA
* * ***
56371 CGCGAATTTCTTTTTCGCAA
1 CACGATTTTCAAATTCGCAA
* * ***
56391 CACAAGTTTCCTTTTCGCAA
1 CACGATTTTCAAATTCGCAA
*
56411 CAAGATTTTCTAAA-TCGCAA
1 CACGATTTTC-AAATTCGCAA
***
56431 CACGAATTTT-GTTTTCGCAA
1 CACG-ATTTTCAAATTCGCAA
*
56451 CTCGATTTTCAAATTCGCAA
1 CACGATTTTCAAATTCGCAA
56471 CACGAATTTT
1 CACG-ATTTT
56481 AATTTCACAA
Statistics
Matches: 135, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
19 9 0.07
20 86 0.64
21 40 0.30
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (20 bp):
CACGATTTTCAAATTCGCAA
Found at i:56328 original size:38 final size:40
Alignment explanation
Indices: 56215--56358 Score: 104
Period size: 38 Copynumber: 3.6 Consensus size: 40
56205 CGCAATACAG
56215 TTTCCAAATTCGCAACGCGATTTTCCCAAATTCGCAACTCAGT
1 TTTCCAAATTCGCAACGCGATTTT--CAAATTCGC-ACTCAGT
* * ** *
56258 TTCTGC-AA-TCGCAACGCGAATTTC-TTTCTCGCAC-GA-T
1 TT-TCCAAATTCGCAACGCGATTTTCAAAT-TCGCACTCAGT
*
56295 TTTCCAAATTCGCAACGCGATTTTCAAATTCGCA-ACACGT
1 TTTCCAAATTCGCAACGCGATTTTCAAATTCGCACTCA-GT
*
56335 AATTT-CAAATTCGCAACTCGATTT
1 --TTTCCAAATTCGCAACGCGATTT
56359 CTGAATTCGC
Statistics
Matches: 80, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
36 2 0.03
37 5 0.06
38 22 0.28
39 4 0.05
40 6 0.08
41 18 0.22
42 17 0.21
43 4 0.05
44 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (40 bp):
TTTCCAAATTCGCAACGCGATTTTCAAATTCGCACTCAGT
Found at i:56357 original size:41 final size:40
Alignment explanation
Indices: 56179--56380 Score: 123
Period size: 41 Copynumber: 5.0 Consensus size: 40
56169 CGAAAATGAC
* ** * * *
56179 CAAATTCGCAATGCGAACTCTAATTTCGCAATAC-AGTTT
1 CAAATTCGCAACGCGATTTCTAAATTCGCAACACGAATTT
* * *
56218 CCAAATTCGCAACGCGATTTTCCCAAATTCGCAACTC-AGTTT
1 -CAAATTCGCAACGCGA-TTT-CTAAATTCGCAACACGAATTT
* * * *
56260 CTGCAA-TCGCAACGCGAATTTCT---TTCTC-GCACGATTTT
1 C--AAATTCGCAACGCG-ATTTCTAAATTCGCAACACGAATTT
56298 CCAAATTCGCAACGCGATTT-TCAAATTCGCAACACGTAATTT
1 -CAAATTCGCAACGCGATTTCT-AAATTCGCAACACG-AATTT
* * *
56340 CAAATTCGCAACTCGATTTCTGAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGATTTCTAAATTCGCAACACGAATTT
56380 C
1 C
56381 TTTTTCGCAA
Statistics
Matches: 127, Mismatches: 20, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
36 1 0.01
37 8 0.06
38 18 0.14
39 1 0.01
40 25 0.20
41 37 0.29
42 34 0.27
43 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.30
Consensus pattern (40 bp):
CAAATTCGCAACGCGATTTCTAAATTCGCAACACGAATTT
Found at i:56381 original size:21 final size:21
Alignment explanation
Indices: 56180--56479 Score: 116
Period size: 20 Copynumber: 14.9 Consensus size: 21
56170 GAAAATGACC
* *
56180 AAATTCGCAATGCGAA-CTCT
1 AAATTCGCAACGCGAATTTCT
* ** * *
56200 AATTTCGCAATAC-AGTTTCC
1 AAATTCGCAACGCGAATTTCT
* *
56220 AAATTCGCAACGCGATTTTCCC
1 AAATTCGCAACGCGAATTT-CT
* *
56242 AAATTCGCAACTC-AGTTTCT
1 AAATTCGCAACGCGAATTTCT
*
56262 GCAA-TCGCAACGCGAATTTCT
1 -AAATTCGCAACGCGAATTTCT
* * *
56283 --TTCTCGC-A--CGATTTTCC
1 AAAT-TCGCAACGCGAATTTCT
*
56300 AAATTCGCAACGCGATTTTC-
1 AAATTCGCAACGCGAATTTCT
*
56320 AAATTCGCAACACGTAATTTC-
1 AAATTCGCAACGCG-AATTTCT
*
56341 AAATTCGCAACTCG-ATTTCT
1 AAATTCGCAACGCGAATTTCT
*
56361 GAATTCGCAACGCGAATTTCT
1 AAATTCGCAACGCGAATTTCT
** *
56382 -TTTTCGCAACAC-AAGTTTCCT
1 AAATTCGCAACGCGAA-TTT-CT
* ** *
56403 --TTTCGCAACAAGATTTTCT
1 AAATTCGCAACGCGAATTTCT
*
56422 AAA-TCGCAACACGAATTT-T
1 AAATTCGCAACGCGAATTTCT
*** * *
56441 GTTTTCGCAACTCGATTTTC-
1 AAATTCGCAACGCGAATTTCT
*
56461 AAATTCGCAACACGAATTT
1 AAATTCGCAACGCGAATTT
56480 TAATTTCACA
Statistics
Matches: 216, Mismatches: 42, Indels: 44
0.72 0.14 0.15
Matches are distributed among these distances:
17 7 0.03
18 4 0.02
19 14 0.06
20 126 0.58
21 51 0.24
22 14 0.06
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (21 bp):
AAATTCGCAACGCGAATTTCT
Found at i:56429 original size:40 final size:40
Alignment explanation
Indices: 56266--56479 Score: 129
Period size: 40 Copynumber: 5.4 Consensus size: 40
56256 GTTTCTGCAA
*
56266 TCGCAACGCGAATTT-CTTTCTCGC-AC--GATTTTCCAAAT
1 TCGCAACACGAATTTCCTTT-TCGCAACAAGATTTT-CAAAT
* * *** * *
56304 TCGCAACGCGATTTTCAAATTCGCAACACGTAATTTCAAAT
1 TCGCAACACGAATTTCCTTTTCGCAACAAG-ATTTTCAAAT
* * ** * ***
56345 TCGCAACTCG-ATTT-CTGAATTCGCAACGCGAATTTCTTTT
1 TCGCAACACGAATTTCCT--TTTCGCAACAAGATTTTCAAAT
56385 TCGCAACAC-AAGTTTCCTTTTCGCAACAAGATTTTCTAAA-
1 TCGCAACACGAA-TTTCCTTTTCGCAACAAGATTTTC-AAAT
** **
56425 TCGCAACACGAATTTTGTTTTCGCAACTCGATTTTCAAAT
1 TCGCAACACGAATTTCCTTTTCGCAACAAGATTTTCAAAT
56465 TCGCAACACGAATTT
1 TCGCAACACGAATTT
56480 TAATTTCACA
Statistics
Matches: 138, Mismatches: 25, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
38 18 0.13
39 6 0.04
40 77 0.56
41 31 0.22
42 6 0.04
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (40 bp):
TCGCAACACGAATTTCCTTTTCGCAACAAGATTTTCAAAT
Found at i:56492 original size:60 final size:59
Alignment explanation
Indices: 56323--56510 Score: 170
Period size: 60 Copynumber: 3.2 Consensus size: 59
56313 GATTTTCAAA
* *
56323 TTCGCAACACGTAATTTCAAATTCGCAACTCG-ATTTCTGAATTCGCAACGCGAATTTCTTT
1 TTCGCAACACG-AATTTCAAATTCGCAACACGAATTTCT-AATTCGCAACACGAATTT-TTT
*** * * *
56384 TTCGCAACAC-AAGTTTCCTTTTCGCAACAAGATTTTCTAAATCGCAACACGAATTTTGTT
1 TTCGCAACACGAA-TTTCAAATTCGCAACACGAATTTCTAATTCGCAACACGAATTTT-TT
* * * *
56444 TTCGCAACTCGATTTTCAAATTCGCAACACGAATTT-TAATTTCACAACA-G-CTTTTATT
1 TTCGCAACACGAATTTCAAATTCGCAACACGAATTTCTAA-TTCGCAACACGAATTTT-TT
56502 TTCGCAACA
1 TTCGCAACA
56511 TAAATGTTTT
Statistics
Matches: 102, Mismatches: 20, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
58 14 0.14
59 7 0.07
60 65 0.64
61 16 0.16
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (59 bp):
TTCGCAACACGAATTTCAAATTCGCAACACGAATTTCTAATTCGCAACACGAATTTTTT
Found at i:57305 original size:12 final size:12
Alignment explanation
Indices: 57284--57317 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
57274 ACCACATTTT
*
57284 CAATACCAAACA
1 CAATATCAAACA
57296 CAATATCAAACA
1 CAATATCAAACA
*
57308 CAATCTCAAA
1 CAATATCAAA
57318 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:57494 original size:24 final size:24
Alignment explanation
Indices: 57443--57496 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
57433 GTATTCGAAA
*
57443 TTTGATATTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCAGAC
* * *
57467 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATATTGGTCAATACCCAGAC
57491 TTTGAT
1 TTTGAT
57497 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCAGAC
Found at i:59784 original size:18 final size:18
Alignment explanation
Indices: 59761--59801 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
59751 AAGCAAAAGG
59761 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
59779 AAATCAAAATCTCAATCA
1 AAATCAAAATCGCAATCA
*
59797 CAATC
1 AAATC
59802 GGCTTCATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:60179 original size:16 final size:16
Alignment explanation
Indices: 60158--60193 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
60148 TGCATATTGA
* *
60158 AATTAAACAACAAATC
1 AATTAAACAAAAAAAC
60174 AATTAAACAAAAAAAC
1 AATTAAACAAAAAAAC
60190 AATT
1 AATT
60194 CTTATTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (16 bp):
AATTAAACAAAAAAAC
Found at i:61598 original size:20 final size:21
Alignment explanation
Indices: 61573--61647 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
61563 GTGAATCGAG
*
61573 CTCTTGAACGGTGGGA-GGGC
1 CTCTTGAACGATGGGAGGGGC
**
61593 CTCTTGAACGATGATAGGGGC
1 CTCTTGAACGATGGGAGGGGC
* *
61614 ATCTTGAACGATAGGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
*
61635 CTCTTGAATGATG
1 CTCTTGAACGATG
61648 ACAGGTGAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 13 0.30
21 31 0.70
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGATGGGAGGGGC
Found at i:61824 original size:4 final size:4
Alignment explanation
Indices: 61792--61845 Score: 72
Period size: 4 Copynumber: 13.5 Consensus size: 4
61782 GGGCCGCTAA
* * * *
61792 AAAT AAAT TAAT ACAT AAAT CAGT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
61840 AAAT AA
1 AAAT AA
61846 TAATGCCGAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (4 bp):
AAAT
Done.