Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001741.1 Hibiscus syriacus cultivar Beakdansim tig00003525_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118030

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2931--2960
15
2.0
15
93
0
51
53
6
3
36
1.44
4222--4268
3
15.7
3
82
8
60
63
0
0
36
0.94
13066--13325
125
2.1
125
83
1
333
33
10
12
44
1.75
13854--13906
21
2.5
21
96
0
97
39
9
15
35
1.79
14459--14875
125
3.4
126
87
3
578
38
15
15
30
1.88
15269--15323
28
1.9
29
82
10
69
34
10
20
34
1.87
15648--15721
31
2.5
31
86
4
98
52
5
2
39
1.38
28875--28913
15
2.5
16
87
4
53
46
0
0
53
1.00
29604--29650
23
2.0
25
84
16
64
25
10
2
61
1.39
35141--35196
29
1.9
29
100
0
112
33
7
30
28
1.84
35709--35833
66
1.9
66
89
0
196
35
26
28
10
1.89
54355--54530
92
1.9
92
82
10
220
38
20
18
22
1.93
56521--56665
60
2.4
62
78
11
151
31
24
4
39
1.76
56857--56915
20
3.0
20
97
0
109
10
22
23
44
1.83
56907--56970
22
3.0
22
68
13
71
18
21
23
35
1.95
57051--57130
6
13.3
6
100
0
160
33
50
16
0
1.45
57745--57797
22
2.4
22
90
0
88
39
28
15
16
1.89
58037--58063
12
2.2
12
100
0
54
40
0
25
33
1.56
78082--78115
15
2.2
16
89
5
52
52
5
5
35
1.50
86489--86513
3
8.3
3
100
0
50
68
0
0
32
0.90
105210--105255
20
2.3
20
85
3
58
32
2
2
63
1.19

Tables:   1

The End!