genome.fa.s1742.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001742.1 Hibiscus syriacus cultivar Beakdansim tig00003529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111450

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1246--1282	2	19.0	2	88	5	58	48	0	0	51	1.00
4096--4165	33	2.1	34	89	7	108	47	24	0	28	1.52
4094--4168	35	2.2	34	86	11	109	46	24	0	29	1.53
4164--4237	35	2.1	35	90	2	123	41	0	14	43	1.46
6552--6582	2	15.0	2	93	6	53	48	0	3	48	1.17
7191--7378	83	2.3	83	81	1	207	42	11	4	41	1.61
9600--9629	3	10.0	3	92	0	51	0	30	0	70	0.88
11720--11750	16	1.9	16	93	0	53	51	12	0	35	1.40
14106--14138	9	3.6	9	95	4	57	60	0	39	0	0.97
19767--19801	14	2.5	14	85	0	52	25	0	25	48	1.51
19850--19912	11	5.9	11	69	14	51	38	1	3	57	1.24
22508--22575	30	2.3	30	100	0	136	39	10	13	36	1.78
23380--23434	8	7.0	8	74	10	51	38	0	1	60	1.08
24528--24589	29	2.1	29	90	0	97	16	30	33	19	1.94
24652--24707	29	1.9	29	88	0	85	14	33	30	21	1.93
24723--24787	33	2.0	33	90	0	103	10	36	27	24	1.89
26682--26727	2	23.0	2	90	0	74	4	50	0	45	1.21
27064--27124	32	1.9	32	82	0	77	13	34	26	26	1.93
29894--29936	8	5.2	8	78	15	52	34	0	0	65	0.93
29893--29937	9	5.3	9	79	15	51	33	0	0	66	0.92
34364--34419	28	1.9	29	82	7	69	28	17	17	35	1.93
39842--39912	20	3.5	20	96	0	124	35	25	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40488--40578	20	4.6	20	81	9	105	50	18	17	13	1.78
40503--40579	19	3.9	19	80	8	91	49	19	19	11	1.78
40503--40582	40	2.0	41	90	2	126	50	18	20	11	1.77
40605--40675	20	3.6	19	86	5	88	14	23	22	39	1.91
42379--42593	94	2.3	94	95	1	378	21	13	18	46	1.83
44431--44466	14	2.6	14	95	0	63	33	0	22	44	1.53
44573--44623	14	3.1	17	72	21	54	45	17	23	13	1.84
44573--44666	33	2.8	33	87	3	127	46	21	19	12	1.82
44636--44682	19	2.5	19	92	0	76	48	25	12	12	1.77
44677--44848	19	9.7	19	68	20	104	15	22	17	44	1.86
44681--44861	33	5.3	33	78	9	146	15	22	17	44	1.86
44747--44819	20	3.7	19	81	5	83	16	20	20	42	1.89
44806--44833	14	2.0	14	100	0	56	14	21	21	42	1.88
44683--44881	33	5.8	33	76	10	130	15	22	18	43	1.87
48301--48346	21	2.2	21	88	0	65	36	17	28	17	1.92
51172--51219	24	2.0	25	84	12	64	70	4	10	14	1.29
58482--58520	20	2.0	20	94	0	69	15	41	30	12	1.85
59485--59529	21	2.1	21	87	0	63	22	24	17	35	1.95
59519--59612	20	4.7	20	79	7	100	38	21	20	20	1.94
59599--59662	20	3.2	20	95	0	110	29	26	20	23	1.99
60411--60464	24	2.2	24	90	0	81	22	16	20	40	1.91
60639--60663	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62875--62902	14	2.0	14	100	0	56	42	28	21	7	1.79
62886--63034	20	7.9	19	79	10	119	42	20	21	15	1.89
63045--63140	33	2.9	34	88	3	140	12	22	20	43	1.86
64642--64744	21	4.9	22	72	11	56	23	19	35	21	1.96
64656--64748	42	2.2	42	79	7	100	23	17	38	20	1.93
65237--65316	20	4.0	20	93	0	133	37	23	20	18	1.94
65228--65316	40	2.2	40	89	0	133	37	23	19	20	1.94
65323--65554	20	12.7	19	73	15	107	17	19	19	43	1.89
65361--65556	20	10.5	20	77	14	161	17	19	19	42	1.89
65323--65556	40	6.4	40	70	19	161	17	19	19	43	1.89
67425--67492	20	3.4	20	83	0	73	42	25	14	17	1.87
67465--67534	33	2.1	34	84	7	90	40	25	20	14	1.90
67862--67937	22	3.5	22	85	0	98	21	17	36	25	1.94
68132--68257	20	6.3	20	94	0	216	18	19	19	42	1.89
68255--68294	21	1.9	21	94	0	71	45	17	20	17	1.86
71694--72066	189	2.0	189	87	1	534	34	13	13	38	1.85
72072--72096	2	12.5	2	100	0	50	48	0	0	52	1.00
73536--73564	2	15.0	2	92	7	51	51	0	0	48	1.00
74595--74686	46	2.0	45	93	4	159	29	5	14	51	1.64
77763--77803	21	2.0	21	90	0	64	26	2	0	70	0.99
78479--78511	13	2.5	14	90	9	52	60	0	3	36	1.12
78667--78843	17	10.2	16	65	21	56	72	2	5	19	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78713--78776	31	2.1	29	83	11	76	75	0	3	21	0.95
78726--78775	24	2.2	22	82	13	57	76	0	2	22	0.89
79786--79848	29	2.2	29	85	8	92	4	7	30	57	1.48
80317--80356	2	20.0	2	100	0	80	50	0	0	50	1.00
80340--80666	38	8.7	36	71	15	173	42	7	3	45	1.52
80338--80620	40	7.4	37	73	16	168	42	7	3	46	1.50
87453--87478	10	2.6	10	100	0	52	61	19	11	7	1.53
87621--87667	10	4.7	10	81	0	58	57	17	12	12	1.65
87855--87917	24	2.6	24	79	0	72	60	14	11	14	1.59
93818--93851	17	2.0	17	100	0	68	5	23	17	52	1.66
94192--94239	25	1.9	25	87	8	71	33	4	6	56	1.44
94215--94322	41	2.6	41	95	0	189	37	4	6	50	1.49
94389--94440	24	2.2	24	82	6	61	26	17	13	42	1.86
94631--94688	22	2.6	23	86	2	82	43	10	15	31	1.80
99062--99088	3	9.0	3	100	0	54	66	0	0	33	0.92
99377--99421	23	2.0	23	90	0	72	44	0	6	48	1.29
100718--101054	143	2.4	143	86	3	498	35	9	18	36	1.83
106137--106167	15	2.1	15	93	0	53	77	0	22	0	0.77

Tables:   1

The End!