Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001743.1 Hibiscus syriacus cultivar Beakdansim tig00003530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110181
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:349 original size:23 final size:23
Alignment explanation
Indices: 322--402 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
312 TATTGAATCT
*
322 TTTTGAACACATTGTTCTTG-AAG
1 TTTTGAA-ACATTGATCTTGAAAG
*
345 TTTTGAAACTTTGATCTTGAAAG
1 TTTTGAAACATTGATCTTGAAAG
*
368 TTTTGAAACTTTGA---TGAAAG
1 TTTTGAAACATTGATCTTGAAAG
*
388 TTTTGAAACTTTGAT
1 TTTTGAAACATTGAT
403 GAGTGAAACC
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
20 20 0.37
22 10 0.19
23 24 0.44
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (23 bp):
TTTTGAAACATTGATCTTGAAAG
Found at i:387 original size:20 final size:20
Alignment explanation
Indices: 342--404 Score: 99
Period size: 20 Copynumber: 3.0 Consensus size: 20
332 ATTGTTCTTG
342 AAGTTTTGAAACTTTGATCTTGA
1 AAGTTTTGAAACTTTGA---TGA
365 AAGTTTTGAAACTTTGATGA
1 AAGTTTTGAAACTTTGATGA
385 AAGTTTTGAAACTTTGATGA
1 AAGTTTTGAAACTTTGATGA
405 GTGAAACCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
20 23 0.57
23 17 0.43
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.41
Consensus pattern (20 bp):
AAGTTTTGAAACTTTGATGA
Found at i:1400 original size:17 final size:17
Alignment explanation
Indices: 1380--1427 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
1370 TTTAGGGAAG
1380 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
* *
1397 TAGTTCATTCATCAAAC
1 TAGTTCATTAATTAAAC
*
1414 TAGTTCATTTATTA
1 TAGTTCATTAATTA
1428 TTAACTCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:2858 original size:13 final size:14
Alignment explanation
Indices: 2840--2872 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
2830 CCGGGTTAGT
2840 AAAAAAA-TCAAAA
1 AAAAAAATTCAAAA
2853 AAAAAAATTCAAAA
1 AAAAAAATTCAAAA
2867 AAAAAA
1 AAAAAA
2873 TTAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (14 bp):
AAAAAAATTCAAAA
Found at i:2873 original size:13 final size:13
Alignment explanation
Indices: 2840--2878 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
2830 CCGGGTTAGT
2840 AAAAAAA-TCAAAA
1 AAAAAAATTC-AAA
2853 AAAAAAATTCAAA
1 AAAAAAATTCAAA
2866 AAAAAAATT-AAA
1 AAAAAAATTCAAA
2878 A
1 A
2879 GAAAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 4 0.16
13 19 0.76
14 2 0.08
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAAAATTCAAA
Found at i:29791 original size:21 final size:21
Alignment explanation
Indices: 29766--29821 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
29756 TACATATATC
* *
29766 ATCATCTATTTTCTTAGCATT
1 ATCATCTATATTATTAGCATT
* *
29787 ATCATATATATTATTATCATT
1 ATCATCTATATTATTAGCATT
29808 ATC-TCTATCATTAT
1 ATCATCTAT-ATTAT
29822 CATCAAATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.30, C:0.16, G:0.02, T:0.52
Consensus pattern (21 bp):
ATCATCTATATTATTAGCATT
Found at i:29826 original size:21 final size:21
Alignment explanation
Indices: 29783--29826 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
29773 ATTTTCTTAG
*
29783 CATTATCATATATATTATTAT
1 CATTATCATATATATTATCAT
*
29804 CATTATC-TCTATCATTATCAT
1 CATTATCATATAT-ATTATCAT
29825 CA
1 CA
29827 AATTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.48
Consensus pattern (21 bp):
CATTATCATATATATTATCAT
Found at i:30008 original size:22 final size:22
Alignment explanation
Indices: 29980--30025 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
29970 ATATGTGAGT
29980 CTATAGAGGTTGTGCACTAATG
1 CTATAGAGGTTGTGCACTAATG
30002 CTATAGAGGTTGTGCACTAATG
1 CTATAGAGGTTGTGCACTAATG
30024 CT
1 CT
30026 GTCACCACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (22 bp):
CTATAGAGGTTGTGCACTAATG
Found at i:30430 original size:151 final size:149
Alignment explanation
Indices: 30060--30513 Score: 730
Period size: 149 Copynumber: 3.0 Consensus size: 149
30050 CCGAAGTGCA
* *
30060 CGTAGAATTACACCGTAGTGCCATATAATAATGTTCATAAGGACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
30125 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
30190 TATATATCCCGAAGGACCG
131 TATATATCCCGAAGGACCG
*
30209 TGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
* *
30274 CATATACAAATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAG-A-ATA
30339 TATATATATCCCGAAGGACCG
129 TATATATATCCCGAAGGACCG
* *
30360 CGTAGAATTGCACCGTAGTGTCATATAATAATGTCCATAAGAACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
* * * * * * * *
30425 CATATACATATGCTAAGGACCAAGTATGTGCCTCA-AAGACCTCATAAATGTTCCAAAGAATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
* *
30489 CATATGTCCCGAAGGACCG
131 TATATATCCCGAAGGACCG
30508 CGTAGA
1 CGTAGA
30514 CCCTCGACTC
Statistics
Matches: 283, Mismatches: 20, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
148 28 0.10
149 120 0.42
150 20 0.07
151 115 0.41
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
TATATATCCCGAAGGACCG
Found at i:31995 original size:64 final size:62
Alignment explanation
Indices: 31862--32022 Score: 189
Period size: 64 Copynumber: 2.5 Consensus size: 62
31852 TAATGAAGGT
* * *
31862 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGA
* *
31927 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TA
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGA
* *
31991 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACT-CCTATGCATCGATGCA
32023 CCTTAAACAA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
63 1 0.01
64 58 0.68
65 23 0.27
66 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (62 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGA
Found at i:34890 original size:21 final size:21
Alignment explanation
Indices: 34865--34920 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
34855 TACATATATC
* *
34865 ATCATCTATTTTGTTAGCATT
1 ATCATCTATATTATTAGCATT
* *
34886 ATCATATATATTATTATCATT
1 ATCATCTATATTATTAGCATT
34907 ATC-TCTATCATTAT
1 ATCATCTAT-ATTAT
34921 CATCAAATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.30, C:0.14, G:0.04, T:0.52
Consensus pattern (21 bp):
ATCATCTATATTATTAGCATT
Found at i:34925 original size:21 final size:21
Alignment explanation
Indices: 34882--34925 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34872 ATTTTGTTAG
*
34882 CATTATCATATATATTATTAT
1 CATTATCATATATATTATCAT
*
34903 CATTATC-TCTATCATTATCAT
1 CATTATCATATAT-ATTATCAT
34924 CA
1 CA
34926 AATTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.48
Consensus pattern (21 bp):
CATTATCATATATATTATCAT
Found at i:35510 original size:149 final size:149
Alignment explanation
Indices: 35137--35590 Score: 739
Period size: 151 Copynumber: 3.0 Consensus size: 149
35127 CCGAAGTGCA
* * *
35137 CGTAGAATTACACCGTAGTGCCATATAATAATGTTCATGAGGACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
35202 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAG-A-ATA
*
35267 TATATATATCCCGAAGGACAG
129 TATATATATCCCGAAGGACCG
35288 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
* *
35353 CATATACATATACTATGGATCAAGTATGCGTCTTACAAGACTTCACACATGTTCCACAGAATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
35418 TATATATCCCGAAGGACCG
131 TATATATCCCGAAGGACCG
*
35437 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGAACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
* * * * * * *
35502 CATATACATATACTAAGGACCAAGTATGTGCCTCA-AAGACCTCATAAATGTTCCAAAGAATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
* *
35566 CATATGTCCCGAAGGACCG
131 TATATATCCCGAAGGACCG
35585 CGTAGA
1 CGTAGA
35591 CCCTCGACTC
Statistics
Matches: 285, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
148 48 0.17
149 117 0.41
150 1 0.00
151 119 0.42
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
CATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
TATATATCCCGAAGGACCG
Found at i:37072 original size:64 final size:63
Alignment explanation
Indices: 36939--37099 Score: 191
Period size: 64 Copynumber: 2.5 Consensus size: 63
36929 TAATGAAGGT
* *
36939 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGAG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGAG
* * *
37004 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGTTGTTTTCTTTTTAAAT-TA
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGA
37068 -
63 G
* *
37068 ATGCATCGATGCACATGCTGTGCATCGATGCA
1 ATGCATCGATGCAC-TCCTATGCATCGATGCA
37100 CCTTAAACAA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
63 1 0.01
64 56 0.66
65 25 0.29
66 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (63 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGAG
Found at i:40594 original size:29 final size:30
Alignment explanation
Indices: 40542--40614 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
40532 ATAATATTTT
* * *
40542 ATTAAAATTTAATT-TTTATTTTTAATAGA
1 ATTATAATTTATTTATTTATTTTTAATAAA
*
40571 ATTATAATTTATTTATTTA-TTTTATTAAA
1 ATTATAATTTATTTATTTATTTTTAATAAA
* *
40600 ATAATAATTAATTTA
1 ATTATAATTTATTTA
40615 AGTAGTCTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 33 0.89
30 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (30 bp):
ATTATAATTTATTTATTTATTTTTAATAAA
Found at i:41422 original size:20 final size:20
Alignment explanation
Indices: 41380--41422 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
41370 ATAATATTTT
* *
41380 ATTTGTATTAATTTTATATC
1 ATTTGTATTAATTGTATACC
41400 ATTTGATATTAATTGT-TACC
1 ATTTG-TATTAATTGTATACC
41420 ATT
1 ATT
41423 AATTTTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTTGTATTAATTGTATACC
Found at i:42277 original size:20 final size:18
Alignment explanation
Indices: 42254--42318 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
42244 TTTTTATTAG
*
42254 TATTAATTTTAA-TTTAA
1 TATTAATTTTAATTTTAT
*
42271 TATT-ATTTGTGATAATTTAT
1 TATTAATTT-T-A-ATTTTAT
*
42291 TATTAATTTTGATTTTAT
1 TATTAATTTTAATTTTAT
42309 TATTAATTTT
1 TATTAATTTT
42319 GATACGTAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
16 4 0.10
17 5 0.12
18 17 0.43
19 1 0.03
20 9 0.22
21 4 0.10
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (18 bp):
TATTAATTTTAATTTTAT
Found at i:49798 original size:8 final size:8
Alignment explanation
Indices: 49785--49809 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
49775 TTTTTATATG
49785 TATGCGAA
1 TATGCGAA
49793 TATGCGAA
1 TATGCGAA
49801 TATGCGAA
1 TATGCGAA
49809 T
1 T
49810 GATTAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (8 bp):
TATGCGAA
Found at i:51232 original size:14 final size:14
Alignment explanation
Indices: 51213--51239 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51203 TATTTACAAG
51213 AGAATGGAAAACTA
1 AGAATGGAAAACTA
51227 AGAATGGAAAACT
1 AGAATGGAAAACT
51240 CTTATCTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.15
Consensus pattern (14 bp):
AGAATGGAAAACTA
Found at i:51512 original size:20 final size:20
Alignment explanation
Indices: 51487--51528 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
51477 ATTACTGTAG
* *
51487 CAGTATCGGTACTATTCATA
1 CAGTATCAGTACTATACATA
51507 CAGTATCAGTACTATACATA
1 CAGTATCAGTACTATACATA
51527 CA
1 CA
51529 ATACAATACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (20 bp):
CAGTATCAGTACTATACATA
Found at i:52763 original size:14 final size:14
Alignment explanation
Indices: 52744--52770 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
52734 TATTTACAAG
52744 AGAATGGAAAACTA
1 AGAATGGAAAACTA
52758 AGAATGGAAAACT
1 AGAATGGAAAACT
52771 CTTATCTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.15
Consensus pattern (14 bp):
AGAATGGAAAACTA
Found at i:53041 original size:20 final size:19
Alignment explanation
Indices: 53018--53076 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
53008 ATTACTGTAG
53018 CAGTATCGATACTATTCATA
1 CAGTATC-ATACTATTCATA
*
53038 CAGTATCAGTACTATACATA
1 CAGTATCA-TACTATTCATA
*
53058 CAATA-CAATACTATTCATA
1 CAGTATC-ATACTATTCATA
53077 AAAAAATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 12 0.35
20 22 0.65
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (19 bp):
CAGTATCATACTATTCATA
Found at i:57427 original size:21 final size:23
Alignment explanation
Indices: 57387--57428 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
57377 GAGCATTGAA
*
57387 TTGAATTTGCAACTTGAATTTCT
1 TTGAATGTGCAACTTGAATTTCT
57410 TTGAATGT-CAAC-TGAATTT
1 TTGAATGTGCAACTTGAATTT
57429 AAAACTCTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 4 0.22
23 7 0.39
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (23 bp):
TTGAATGTGCAACTTGAATTTCT
Found at i:60444 original size:37 final size:37
Alignment explanation
Indices: 60388--60484 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
60378 TTGAAATAAG
* *
60388 TCAATATTAAGCATTCACGAAAGAATAATGAAGCAAGA
1 TCAATATTAAGCCTTCACGAAAGAATAATAAAGCAA-A
* * *
60426 -CAATTTTAAGCCTTCACGAAAGAGTAGTAAAGCAAA
1 TCAATATTAAGCCTTCACGAAAGAATAATAAAGCAAA
* *
60462 TCAATCTT-AGCCTTCAAGAAAGA
1 TCAATATTAAGCCTTCACGAAAGA
60485 GTAGCGAAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
36 15 0.29
37 36 0.71
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.23
Consensus pattern (37 bp):
TCAATATTAAGCCTTCACGAAAGAATAATAAAGCAAA
Found at i:60483 original size:36 final size:36
Alignment explanation
Indices: 60434--60505 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
60424 GACAATTTTA
* *
60434 AGCCTTCACGAAAGAGTAG-TAAAGCAAATCAATCTT
1 AGCCTTCAAGAAAGAGTAGCGAAA-CAAATCAATCTT
60470 AGCCTTCAAGAAAGAGTAGCGAAACAAATCAATCTT
1 AGCCTTCAAGAAAGAGTAGCGAAACAAATCAATCTT
60506 GAGTCTGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 30 0.91
37 3 0.09
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (36 bp):
AGCCTTCAAGAAAGAGTAGCGAAACAAATCAATCTT
Found at i:60602 original size:55 final size:55
Alignment explanation
Indices: 60541--60983 Score: 482
Period size: 55 Copynumber: 8.0 Consensus size: 55
60531 GTGGAGCATG
* *
60541 CCCATTTTTTGAAGATTGTTCAAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
1 CCCATTTTTCGAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
*
60596 CCCA-TTTTCTGAAGATAT-TTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGA
1 CCCATTTTTC-GAAGAT-TGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
* * ** *
60651 CCTATTTTCCGAAGATTGTTTAAGTCCTATACTCCCTGAAAGAAGAGGGAGTTGA
1 CCCATTTTTCGAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
* * * * * * ***
60706 CCTATTTTTCCGAAGATTGTTCAAATACTATACTCCTTAAAAGAAGAGGGAGCAAA
1 CCCATTTTT-CGAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
* * *
60762 TCCAATTTTCGAAGATTGTTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGTGGA
1 CCCATTTTTCGAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
* *
60817 ACCATTTTTCGAAGATTGCTT-GAGTCCTATACTCCCTGAAAGAATAGGGAGTGGA
1 CCCATTTTTCGAAGATTG-TTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
* * * * * **
60872 CCCATCTTTCGAAGATTTTTTGAGTCTTAT-CTCCCTGAAAGAAGAATGGAGCAGA
1 CCCATTTTTCGAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAG-AGGGAGTGGA
* * * * *
60927 CGCATTTTATC-AAGTTTTTTTCGAGTCATATACTCCCTGAAAGAAGAGTGAGTGGA
1 CCCATTTT-TCGAAG-ATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
60983 C
1 C
60984 ACGTCTTCCA
Statistics
Matches: 328, Mismatches: 49, Indels: 21
0.82 0.12 0.05
Matches are distributed among these distances:
54 20 0.06
55 221 0.67
56 73 0.22
57 14 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (55 bp):
CCCATTTTTCGAAGATTGTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
Found at i:60952 original size:166 final size:167
Alignment explanation
Indices: 60551--60982 Score: 484
Period size: 166 Copynumber: 2.6 Consensus size: 167
60541 CCCATTTTTT
* * * *** * *
60551 GAAGATTGTTCAAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA-CCCATTTTCTGAAGATATT
1 GAAGATTGTTCAAATACTATACTCCCTAAAAGAAGAGGGAGCAAATCCAATTTTC-GAAGATTTT
* *
60615 TCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGG-ACCTATTTTCCGAAGATTGTTTAAGTCCT
65 TCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGAACCTATTTTCCGAAGATTGCTTAAGTCCT
* * *
60679 ATACTCCCTGAAAGAAGAGGGAGTTGACCTATTTTTCC
130 ATACTCCCTGAAAGAAGAGGGAGTGGACCCATCTTTCC
* *
60717 GAAGATTGTTCAAATACTATACTCCTTAAAAGAAGAGGGAGCAAATCCAATTTTCGAAGATTGTT
1 GAAGATTGTTCAAATACTATACTCCCTAAAAGAAGAGGGAGCAAATCCAATTTTCGAAGATTTTT
* * *
60782 CGAGTCCTATACTCCCTAAAAGAAGAGGGAGTGGAACC-ATTTTTCGAAGATTGCTTGAGTCCTA
66 CGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGAACCTATTTTCCGAAGATTGCTTAAGTCCTA
*
60846 TACTCCCTGAAAGAATAGGGAGTGGACCCATCTTT-C
131 TACTCCCTGAAAGAAGAGGGAGTGGACCCATCTTTCC
* ** * * * * * *
60882 GAAGATTTTTTGAGT-CT-TATCTCCCTGAAAGAAGAATGGAGCAGA-CGCATTTTATC-AAGTT
1 GAAGATTGTTCAAATACTATA-CTCCCTAAAAGAAG-AGGGAGCAAATC-CAATTT-TCGAAG-A
* *
60943 TTTTTCGAGTCATATACTCCCTGAAAGAAGAGTGAGTGGA
61 TTTTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGA
60983 CACGTCTTCC
Statistics
Matches: 226, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
163 2 0.01
164 15 0.07
165 28 0.12
166 170 0.75
167 11 0.05
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (167 bp):
GAAGATTGTTCAAATACTATACTCCCTAAAAGAAGAGGGAGCAAATCCAATTTTCGAAGATTTTT
CGAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGAACCTATTTTCCGAAGATTGCTTAAGTCCTA
TACTCCCTGAAAGAAGAGGGAGTGGACCCATCTTTCC
Found at i:60980 original size:111 final size:108
Alignment explanation
Indices: 60546--60983 Score: 418
Period size: 111 Copynumber: 4.0 Consensus size: 108
60536 GCATGCCCAT
* ** *
60546 TTTTTGAAGATTGTTCAAGTCCTATACTCCCTGAAAGAAGAGGGAGTGGACCCA-TTTTCTGAAG
1 TTTTCGAAGATTGTTTGAGTCCTATACTCCCTGAAAGAAGAGGGAGTAGA-CCATTTTTC-GAAG
* * * *
60610 ATATTTCGAGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCTA
64 TTTTTTCGAGTCATATACTCCCTGAAAGAAGAGGGAGCGGACCAA
* *
60655 TTTTCCGAAGATTGTTTAAGTCCTATACTCCCTGAAAGAAGAGGGAGTTGACCTATTTTTCCGAA
1 TTTT-CGAAGATTGTTTGAGTCCTATACTCCCTGAAAGAAGAGGGAGTAGACC-ATTTTT-CGAA
* * * * * * **
60720 GATTGTTCAAAT-ACTATACTCCTTAAAAGAAGAGGGAGCAAATCCAA
63 GTTTTTTCGAGTCA-TATACTCCCTGAAAGAAGAGGGAGCGGA-CCAA
* * *
60767 TTTTCGAAGATTGTTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGTGGAACCATTTTTCGAAGA
1 TTTTCGAAGATTGTTTGAGTCCTATACTCCCTGAAAGAAGAGGGAGTAG-ACCATTTTTCGAAG-
** * * * *
60832 TTGCTT-GAGTCCTATACTCCCTGAAAGAATAGGGAGTGGACCCA
64 TTTTTTCGAGTCATATACTCCCTGAAAGAAGAGGGAGCGGACCAA
* * * *
60876 TCTTTCGAAGATTTTTTGAGTCTTAT-CTCCCTGAAAGAAGAATGGAGCAGACGCATTTTATC-A
1 T-TTTCGAAGATTGTTTGAGTCCTATACTCCCTGAAAGAAG-AGGGAGTAGAC-CATTTT-TCGA
* *
60939 AGTTTTTTTCGAGTCATATACTCCCTGAAAGAAGAGTGAGTGGAC
62 AG-TTTTTTCGAGTCATATACTCCCTGAAAGAAGAGGGAGCGGAC
60984 ACGTCTTCCA
Statistics
Matches: 272, Mismatches: 43, Indels: 26
0.80 0.13 0.08
Matches are distributed among these distances:
109 25 0.09
110 113 0.42
111 123 0.45
112 11 0.04
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (108 bp):
TTTTCGAAGATTGTTTGAGTCCTATACTCCCTGAAAGAAGAGGGAGTAGACCATTTTTCGAAGTT
TTTTCGAGTCATATACTCCCTGAAAGAAGAGGGAGCGGACCAA
Found at i:61186 original size:82 final size:82
Alignment explanation
Indices: 60981--61281 Score: 347
Period size: 82 Copynumber: 3.7 Consensus size: 82
60971 AGAGTGAGTG
* * * *
60981 GACACGTCTTCCAAAATAGATCTATCTACCTG-AAAAGAGGCACATATCAAGTTTGATTTCCCCT
1 GACACGTCTTCCAAAATAGATCTGTCTACCCGAAAAAAAGGCACATATCAAGTCTGATTTCCCCT
* * *
61045 GAAAGAAGAG-GGAACA
66 GAATGAACAGTGGAGCA
* * * * * * * *
61061 AACACGTCTTCCAAAATATATTTGTCTACTCGAAGAAGAGGCACAGATCAAGTCTGATTCCCCCT
1 GACACGTCTTCCAAAATAGATCTGTCTACCCGAAAAAAAGGCACATATCAAGTCTGATTTCCCCT
* *
61126 GAATGAATAGTCGAGCA
66 GAATGAACAGTGGAGCA
* *
61143 GACACATCTTCCAAAATAGATCTGTCTACCCGAAAAAAAGGCACATATCAAGTTTGATTTCCCCT
1 GACACGTCTTCCAAAATAGATCTGTCTACCCGAAAAAAAGGCACATATCAAGTCTGATTTCCCCT
*
61208 GAATGAACAGTGGAGTA
66 GAATGAACAGTGGAGCA
* * * * *
61225 GACACGTCTTCTAAAATAGATTTGTCTACCC-AAAAAAGTGGAACAAATCAAGTCTGA
1 GACACGTCTTCCAAAATAGATCTGTCTACCCGAAAAAA-AGGCACATATCAAGTCTGA
61282 CCACCATGAA
Statistics
Matches: 184, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
80 26 0.14
81 42 0.23
82 116 0.63
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.24
Consensus pattern (82 bp):
GACACGTCTTCCAAAATAGATCTGTCTACCCGAAAAAAAGGCACATATCAAGTCTGATTTCCCCT
GAATGAACAGTGGAGCA
Found at i:61280 original size:164 final size:162
Alignment explanation
Indices: 60981--61281 Score: 431
Period size: 164 Copynumber: 1.8 Consensus size: 162
60971 AGAGTGAGTG
* * *
60981 GACACGTCTTCCAAAATAGATCTATCTACCTGAAAAGAGGCACATATCAAGTTTGATTTCCCCTG
1 GACACATCTTCCAAAATAGATCTATCTACCCGAAAAAAGGCACATATCAAGTTTGATTTCCCCTG
* * * * * * *
61046 AAAGAAGAGGGAACAAACACGTCTTCCAAAATATATTTGTCTACTCGAAGAAGAGGCACAGATCA
66 AAAGAACAGGGAACAAACACGTCTTCCAAAATAGATTTGTCTACCCAAAAAAGAGGAACAAATCA
61111 AGTCTGATTCCCCCTGAATGAATAGTCGAGCA
131 AGTCTGATTCCCCCTGAATGAATAGTCGAGCA
*
61143 GACACATCTTCCAAAATAGATCTGTCTACCCGAAAAAAAGGCACATATCAAGTTTGATTTCCCCT
1 GACACATCTTCCAAAATAGATCTATCTACCCG-AAAAAAGGCACATATCAAGTTTGATTTCCCCT
* ** * * *
61208 GAATGAACAGTGGAGTAGACACGTCTTCTAAAATAGATTTGTCTACCCAAAAAAGTGGAACAAAT
65 GAAAGAACAG-GGAACAAACACGTCTTCCAAAATAGATTTGTCTACCCAAAAAAGAGGAACAAAT
61273 CAAGTCTGA
129 CAAGTCTGA
61282 CCACCATGAA
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
162 29 0.24
163 39 0.32
164 52 0.43
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.24
Consensus pattern (162 bp):
GACACATCTTCCAAAATAGATCTATCTACCCGAAAAAAGGCACATATCAAGTTTGATTTCCCCTG
AAAGAACAGGGAACAAACACGTCTTCCAAAATAGATTTGTCTACCCAAAAAAGAGGAACAAATCA
AGTCTGATTCCCCCTGAATGAATAGTCGAGCA
Found at i:62983 original size:17 final size:18
Alignment explanation
Indices: 62961--62995 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
62951 TAGGTTCAGT
*
62961 TTAGG-TTTATGTTAAAA
1 TTAGGTTTTATATTAAAA
62978 TTAGGTTTTATATTAAAA
1 TTAGGTTTTATATTAAAA
62996 CGTTTGGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (18 bp):
TTAGGTTTTATATTAAAA
Found at i:66571 original size:39 final size:39
Alignment explanation
Indices: 66514--66609 Score: 156
Period size: 39 Copynumber: 2.5 Consensus size: 39
66504 CATTAACTAA
* *
66514 GCATCAAAATTAAAATTAATGATCAATATTCAAACTTGT
1 GCATCAAAATTAATATTAATGATCAATATTCAAACTTGC
*
66553 GCATCAAAATTAATATTAATGATCAATATTCAAATTTGC
1 GCATCAAAATTAATATTAATGATCAATATTCAAACTTGC
*
66592 GTATCAAAATTAATATTA
1 GCATCAAAATTAATATTA
66610 TCGTGACTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.35
Consensus pattern (39 bp):
GCATCAAAATTAATATTAATGATCAATATTCAAACTTGC
Found at i:67209 original size:2 final size:2
Alignment explanation
Indices: 67202--67254 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
67192 AGTCCTTCAT
67202 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67244 TA TA TA TA TA T
1 TA TA TA TA TA T
67255 GAAGCATGAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68572 original size:18 final size:17
Alignment explanation
Indices: 68550--68613 Score: 64
Period size: 16 Copynumber: 3.8 Consensus size: 17
68540 TGTCCATTTT
68550 TATTATTA-ATTATATTA
1 TATTATTATATTA-ATTA
68567 TTATTATTATATTACA-TA
1 -TATTATTATATTA-ATTA
68585 T-TTATTATATATAA-TA
1 TATTATTATAT-TAATTA
68601 TATTATTATATTA
1 TATTATTATATTA
68614 TATTTGCATT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
16 15 0.36
17 12 0.29
18 10 0.24
19 5 0.12
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTATTATATTAATTA
Found at i:68592 original size:30 final size:33
Alignment explanation
Indices: 68553--68613 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
68543 CCATTTTTAT
68553 TATTAATTATAT-T-AT-TATTATTATATTACA
1 TATTAATTATATATAATATATTATTATATTACA
*
68583 TATTTATTATATATAATATATTATTATATTA
1 TATTAATTATATATAATATATTATTATATTA
68614 TATTTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.41
31 1 0.04
32 2 0.07
33 13 0.48
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (33 bp):
TATTAATTATATATAATATATTATTATATTACA
Found at i:68615 original size:18 final size:18
Alignment explanation
Indices: 68550--68615 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
68540 TGTCCATTTT
*
68550 TATTATTA-ATTATATTA
1 TATTATTATATTATAATA
*
68567 TTATTATTATATTA-CATA
1 -TATTATTATATTATAATA
68585 T-TTATTATA-TATAATA
1 TATTATTATATTATAATA
68601 TATTATTATATTATA
1 TATTATTATATTATA
68616 TTTGCATTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.05
16 12 0.29
17 9 0.22
18 14 0.34
19 4 0.10
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATTATATTATAATA
Found at i:69398 original size:22 final size:22
Alignment explanation
Indices: 69373--69438 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
69363 TCGGCCACCA
*
69373 GAATAGTGACCGGCGATTGCCG
1 GAATAGTGACCGGCGATGGCCG
* * *
69395 GAATAGTGACTGGCGGTGGCCA
1 GAATAGTGACCGGCGATGGCCG
* *
69417 GAATACTGATCGGCGATGGCCG
1 GAATAGTGACCGGCGATGGCCG
69439 AGGAGGGAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.18
Consensus pattern (22 bp):
GAATAGTGACCGGCGATGGCCG
Found at i:70000 original size:26 final size:27
Alignment explanation
Indices: 69951--70002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
69941 TTAATAACCT
* *
69951 ATTATTTTGATATTTTTATTTTTAATC
1 ATTATTTTGATATATTTATATTTAATC
*
69978 ATTATTTT-ATATATTTGTATTTAAT
1 ATTATTTTGATATATTTATATTTAAT
70003 TTATATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (27 bp):
ATTATTTTGATATATTTATATTTAATC
Found at i:77198 original size:41 final size:42
Alignment explanation
Indices: 77092--77198 Score: 135
Period size: 42 Copynumber: 2.6 Consensus size: 42
77082 CACGAATTTG
* * * *
77092 TAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCATGATGTT
1 TAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATGTA
*
77134 TAAACCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATG-A
1 TAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATGTA
* * *
77175 TAAGTCCTTAGGGCCATCCGTCAG
1 TAAATCCTTAGGGTCATCTGTCAG
77199 ACCTTTGGGC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
41 20 0.36
42 36 0.64
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (42 bp):
TAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATGTA
Found at i:77205 original size:249 final size:249
Alignment explanation
Indices: 76758--77220 Score: 739
Period size: 249 Copynumber: 1.9 Consensus size: 249
76748 GAAAAATGAG
* * * **
76758 AAAGTTTCTCATTTAATTTTCTAAAAAATGAAATTCTTGAAAAGTAAGAAGGTTTTTTACCCAGT
1 AAAGTTTCTCATTTAATGTTCTAAAAAATCAAATTCTTGAAAAGTAAGAAGGTCTCATACCCAGT
76823 AAAATATTTTCACGAATTTCTAAATCCTTCGGGTCATCTGTAAGTCCTTCGAGCATGATGCTTAA
66 AAAATATTTTCACGAATTTCTAAATCCTTCGGGTCATCTGTAAGTCCTTCGAGCATGATGCTTAA
* *
76888 AACCATCGGGTCATCTGTTAGCCTTTCGAGCAAGATGATAAGTCATTAGGGCCATCCATCAAACC
131 AACCATAGGGTCATCTGTCAGCCTTTCGAGCAAGATGATAAGTCATTAGGGCCATCCATCAAACC
*
76953 TTTGGGTAGGATGTTTACATATGATTTTCGCATGAAAATGAGATAGAGATTTTC
196 TTTGGGCAGGATGTTTACATATGATTTTCGCATGAAAATGAGATAGAGATTTTC
* *
77007 AAAGTTTCTCATTTAATGTTCTAGAAAATCAAATTTTTGAAAAGTAAGAA-GTCTCATACCCAGT
1 AAAGTTTCTCATTTAATGTTCTAAAAAATCAAATTCTTGAAAAGTAAGAAGGTCTCATACCCAGT
* * *
77071 AAAATATTTCTCACGAATTTGTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCATGATGTTTA
66 AAAATATTT-TCACGAATTTCTAAATCCTTCGGGTCATCTGTAAGTCCTTCGAGCATGATGCTTA
* * * * * *
77136 AACCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCCGTCAGAC
130 AAACCATAGGGTCATCTGTCAGCCTTTCGAGCAAGATGATAAGTCATTAGGGCCATCCATCAAAC
77201 CTTTGGGCAGGATGTTTACA
195 CTTTGGGCAGGATGTTTACA
77221 CTTTTTAATT
Statistics
Matches: 194, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
248 20 0.10
249 174 0.90
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (249 bp):
AAAGTTTCTCATTTAATGTTCTAAAAAATCAAATTCTTGAAAAGTAAGAAGGTCTCATACCCAGT
AAAATATTTTCACGAATTTCTAAATCCTTCGGGTCATCTGTAAGTCCTTCGAGCATGATGCTTAA
AACCATAGGGTCATCTGTCAGCCTTTCGAGCAAGATGATAAGTCATTAGGGCCATCCATCAAACC
TTTGGGCAGGATGTTTACATATGATTTTCGCATGAAAATGAGATAGAGATTTTC
Found at i:77400 original size:12 final size:13
Alignment explanation
Indices: 77383--77452 Score: 65
Period size: 13 Copynumber: 5.5 Consensus size: 13
77373 TGTCCGTTTT
77383 TATTATTA-ATTA
1 TATTATTATATTA
77395 TATTATTATTATTA
1 TATTATTA-TATTA
*
77409 TATTA-CATATT-
1 TATTATTATATTA
*
77420 TATTATATATAATA
1 TATTAT-TATATTA
* *
77434 TAATATAATATTA
1 TATTATTATATTA
77447 TATTAT
1 TATTAT
77453 ATTTGCATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
11 5 0.11
12 12 0.26
13 15 0.33
14 14 0.30
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTATATTA
Found at i:77419 original size:18 final size:17
Alignment explanation
Indices: 77382--77455 Score: 55
Period size: 19 Copynumber: 4.1 Consensus size: 17
77372 TTGTCCGTTT
77382 TTATTATTA-ATTATATTA
1 TTATTATTATATTA-A-TA
77400 TTATTATTATATTACATA
1 TTATTATTATATTA-ATA
77418 TTTATTATATATAATATAATA
1 -TTATTAT-TAT-AT-TAATA
*
77439 -TAATATTATATT-ATA
1 TTATTATTATATTAATA
77454 TT
1 TT
77456 TGCATTTACA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
15 3 0.06
16 2 0.04
17 2 0.04
18 14 0.29
19 17 0.35
20 3 0.06
21 5 0.10
22 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATTATTATATTAATA
Found at i:77434 original size:16 final size:15
Alignment explanation
Indices: 77386--77434 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
77376 CCGTTTTTAT
* *
77386 TATTAATTATATTAT
1 TATTTATTATATTAA
77401 TA-TTATTATATTACA
1 TATTTATTATATTA-A
77416 TATTTATTATATATAA
1 TATTTATTATAT-TAA
77432 TAT
1 TAT
77435 AATATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 10 0.34
15 4 0.14
16 13 0.45
17 2 0.07
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTTATTATATTAA
Found at i:78133 original size:22 final size:22
Alignment explanation
Indices: 78105--78166 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
78095 TTTTCCACTG
* *
78105 GAATAGTGACCGGCGGTTGCCA
1 GAATAGTGACCGACGGTGGCCA
*
78127 GAATAGTGACCGATGGTGGCCA
1 GAATAGTGACCGACGGTGGCCA
*
78149 GAATAGTGATCGACGGTG
1 GAATAGTGACCGACGGTG
78167 ACTGAGCGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.26, C:0.18, G:0.37, T:0.19
Consensus pattern (22 bp):
GAATAGTGACCGACGGTGGCCA
Found at i:78255 original size:30 final size:30
Alignment explanation
Indices: 78220--78285 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
78210 GGAGTTTAGA
*
78220 GAGAAGGGAGAGTTTTTCTCTCCTTAGAGG
1 GAGAAGGGAGAGCTTTTCTCTCCTTAGAGG
*
78250 GAGAAGGGAGAGCTTTTCTCTCTTTAGAGG
1 GAGAAGGGAGAGCTTTTCTCTCCTTAGAGG
78280 GAGAAG
1 GAGAAG
78286 TAAATTGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.26, C:0.12, G:0.35, T:0.27
Consensus pattern (30 bp):
GAGAAGGGAGAGCTTTTCTCTCCTTAGAGG
Found at i:78801 original size:13 final size:13
Alignment explanation
Indices: 78785--78832 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
78775 TTTTGATTTT
78785 TTATTTTTAATCA
1 TTATTTTTAATCA
**
78798 TTATTTTATATATTT
1 TTATTTT-TA-ATCA
78813 TTATTTTTAATCA
1 TTATTTTTAATCA
78826 TTATTTT
1 TTATTTT
78833 ATATATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 16 0.55
14 4 0.14
15 9 0.31
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (13 bp):
TTATTTTTAATCA
Found at i:78818 original size:15 final size:15
Alignment explanation
Indices: 78798--78846 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
78788 TTTTTAATCA
78798 TTATTTTATATATTT
1 TTATTTTATATATTT
**
78813 TTATTTT-TA-ATCA
1 TTATTTTATATATTT
78826 TTATTTTATATATTT
1 TTATTTTATATATTT
78841 TTATTT
1 TTATTT
78847 AAGTTATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 9 0.32
14 4 0.14
15 15 0.54
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TTATTTTATATATTT
Found at i:78819 original size:28 final size:28
Alignment explanation
Indices: 78782--78846 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
78772 TTATTTTGAT
78782 TTTTTATTTTTAATCATTATTTTATATA
1 TTTTTATTTTTAATCATTATTTTATATA
78810 TTTTTATTTTTAATCATTATTTTATATA
1 TTTTTATTTTTAATCATTATTTTATATA
78838 TTTTTATTT
1 TTTTTATTT
78847 AAGTTATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (28 bp):
TTTTTATTTTTAATCATTATTTTATATA
Found at i:78819 original size:35 final size:33
Alignment explanation
Indices: 78773--78846 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 33
78763 AATAAACTAT
*
78773 TATTTTGATTTTTTATTTTTAATCATTATTTTA
1 TATTTTTATTTTTTATTTTTAATCATTATTTTA
78806 TA----TA-TTTTTATTTTTAATCATTATTTTATA
1 TATTTTTATTTTTTATTTTTAATCATTA-TTT-TA
78836 TATTTTTATTT
1 TATTTTTATTT
78847 AAGTTATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
28 19 0.58
29 4 0.12
30 4 0.12
33 2 0.06
34 2 0.06
35 2 0.06
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (33 bp):
TATTTTTATTTTTTATTTTTAATCATTATTTTA
Found at i:81365 original size:28 final size:29
Alignment explanation
Indices: 81333--81403 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 29
81323 AAAAAAATTA
81333 ATTAAATAAAATATAA-AAAA-ATTAAAT
1 ATTAAATAAAATATAACAAAATATTAAAT
* *
81360 ACTTAAATAAATTAAAAACAAAATATTAAAT
1 A-TTAAATAAAAT-ATAACAAAATATTAAAT
81391 A-T-AATAAAATATA
1 ATTAAATAAAATATA
81404 CCTTAAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
27 3 0.08
28 17 0.47
29 4 0.11
30 4 0.11
31 8 0.22
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (29 bp):
ATTAAATAAAATATAACAAAATATTAAAT
Found at i:81367 original size:23 final size:22
Alignment explanation
Indices: 81332--81400 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 22
81322 CAAAAAAATT
81332 AATTAAATA--AAATATAAAAA
1 AATTAAATATTAAATATAAAAA
81352 AATTAAATACTTAAATA-AATTAAA
1 AATTAAATA-TTAAATATAA--AAA
** *
81376 AACAAAATATTAAATATAATAA
1 AATTAAATATTAAATATAAAAA
81398 AAT
1 AAT
81401 ATACCTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
20 9 0.23
22 6 0.15
23 12 0.31
24 12 0.31
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (22 bp):
AATTAAATATTAAATATAAAAA
Found at i:81376 original size:24 final size:23
Alignment explanation
Indices: 81341--81399 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
81331 TAATTAAATA
**
81341 AAATATAA-AAAAATTAAATACTT
1 AAATATAATAAAAACAAAATA-TT
81364 AAATA-AATTAAAAACAAAATATT
1 AAATATAA-TAAAAACAAAATATT
81387 AAATATAATAAAA
1 AAATATAATAAAA
81400 TATACCTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 2 0.06
23 17 0.55
24 12 0.39
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (23 bp):
AAATATAATAAAAACAAAATATT
Found at i:83392 original size:12 final size:12
Alignment explanation
Indices: 83375--83413 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
83365 TCATGCGTAC
83375 AATAT-ATATAAT
1 AATATAATAT-AT
83387 AATATAATATAT
1 AATATAATATAT
83399 AATATAATTATAT
1 AATATAA-TATAT
83412 AA
1 AA
83414 AAAGTTACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATATAATATAT
Found at i:86656 original size:14 final size:14
Alignment explanation
Indices: 86627--86667 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
86617 CTTGAAAAAA
*
86627 AATAACAAATATAAT
1 AATAATAAA-ATAAT
86642 AATAATAAAATAAT
1 AATAATAAAATAAT
*
86656 AAAAATAAAATA
1 AATAATAAAATA
86668 TCAGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
AATAATAAAATAAT
Found at i:86663 original size:23 final size:22
Alignment explanation
Indices: 86625--86667 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
86615 AACTTGAAAA
*
86625 AAAATAACAAATATAATAATAAT
1 AAAATAACAAAAATAA-AATAAT
*
86648 AAAATAATAAAAATAAAATA
1 AAAATAACAAAAATAAAATA
86668 TCAGGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (22 bp):
AAAATAACAAAAATAAAATAAT
Found at i:86917 original size:20 final size:20
Alignment explanation
Indices: 86889--86933 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
86879 TAGGTAAGAA
* *
86889 ACTTAGGGAATCATTTTCTT
1 ACTTTGGGAAACATTTTCTT
86909 ACTTTGGGAAACATTTTCTT
1 ACTTTGGGAAACATTTTCTT
86929 ACTTT
1 ACTTT
86934 TCAAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.47
Consensus pattern (20 bp):
ACTTTGGGAAACATTTTCTT
Found at i:87234 original size:244 final size:244
Alignment explanation
Indices: 86909--87528 Score: 843
Period size: 244 Copynumber: 2.5 Consensus size: 244
86899 TCATTTTCTT
* * *
86909 ACTTTGGGAAA-CATTTTCTTACTTTTCAAAAATTTCAATTTTTACTTTTAAATGAGAAACTTTT
1 ACTTT-GGAAATCATTTTCTTACTTTTCAAAATTTTCAATTTTAACATTTAAATGAGAAACTTTT
* * * * *
86973 CTAATTTTTCAAGAAACATGTGAAAACATCATGCTCGAAGGTCTTGTGGATGGCCTGGAGGATTT
65 CTAATTTTTCGAGAAACATGTGAAAACATCCTGCTCGAAGGTCTTGTGGATGGCCCGAAGGACTT
** *
87038 ATCATCTT-ATTCGAAAGGCTTGCAAATAACCCGAAAGATTTAATCATCATGCTTGAAATACTTA
130 ATCATCTTGATT-GAAAGGCTTGCAAATAACCCGAAAGATTTAATCATCATGCTCAAAAAACTTA
87102 CTGATGGCCCGAAGGACTTACAAATTTTGGAAATAGTTTACT-AGATAAGAA
194 CTGATGGCCCGAAGGACTTACAAATTTTGGAAATAGTTTACTAAG-TAAGAA
* *
87153 ACTTTGGAAATCATTTTCTTACTTTTCAAAATTTTCAATTTTAAGATTTAAATGAGAAAGTTTTC
1 ACTTTGGAAATCATTTTCTTACTTTTCAAAATTTTCAATTTTAACATTTAAATGAGAAACTTTTC
* * * *
87218 TCATTTTTCGAGAAACATGTAAAAACATCCTACCCGAAGGTCTTGTGGATGGCCCGAAGGACTTA
66 TAATTTTTCGAGAAACATGTGAAAACATCCTGCTCGAAGGTCTTGTGGATGGCCCGAAGGACTTA
* * * * * *
87283 TCATCTTGCTTGAAAGGCTTGTAGATGACCTGAAGGATTTAATCATCATGCTCAAAAAACTTACT
131 TCATCTTGATTGAAAGGCTTGCAAATAACCCGAAAGATTTAATCATCATGCTCAAAAAACTTACT
**
87348 GATGGCCCGAAGGACTTACCGATTTTGGAAATAGTTTACTAAGTAAGAA
196 GATGGCCCGAAGGACTTACAAATTTTGGAAATAGTTTACTAAGTAAGAA
* * *
87397 ACTTTGGAAATCATTTTTTTAACTTTTCAAAAATTTT-AATTTTAATATTTAAATGTGAAACTTT
1 ACTTTGGAAATCATTTTCTT-ACTTTTC-AAAATTTTCAATTTTAACATTTAAATGAGAAACTTT
* * * * * * * *
87461 TCTTATTTTTCGAGAAATATGTGAAAAAATCCTGCTTGAAAGTCTTATGAATGACCCGAAGGACT
64 TCTAATTTTTCGAGAAACATGTGAAAACATCCTGCTCGAAGGTCTTGTGGATGGCCCGAAGGACT
87526 TAT
129 TAT
87529 TAGCTTGCTC
Statistics
Matches: 331, Mismatches: 40, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
243 5 0.02
244 226 0.68
245 92 0.28
246 8 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (244 bp):
ACTTTGGAAATCATTTTCTTACTTTTCAAAATTTTCAATTTTAACATTTAAATGAGAAACTTTTC
TAATTTTTCGAGAAACATGTGAAAACATCCTGCTCGAAGGTCTTGTGGATGGCCCGAAGGACTTA
TCATCTTGATTGAAAGGCTTGCAAATAACCCGAAAGATTTAATCATCATGCTCAAAAAACTTACT
GATGGCCCGAAGGACTTACAAATTTTGGAAATAGTTTACTAAGTAAGAA
Found at i:87318 original size:41 final size:43
Alignment explanation
Indices: 87254--87334 Score: 103
Period size: 41 Copynumber: 1.9 Consensus size: 43
87244 ATCCTACCCG
* * *
87254 AAGGTCTTGTGGATGGCCCGAAGGACTT-ATCATCTTGCTTGA
1 AAGGTCTTGTAGATGACCCGAAGGACTTAATCATCATGCTTGA
* *
87296 AAGG-CTTGTAGATGACCTGAAGGATTTAATCATCATGCT
1 AAGGTCTTGTAGATGACCCGAAGGACTTAATCATCATGCT
87335 CAAAAAACTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 19 0.58
42 14 0.42
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
AAGGTCTTGTAGATGACCCGAAGGACTTAATCATCATGCTTGA
Found at i:95547 original size:131 final size:131
Alignment explanation
Indices: 95370--95627 Score: 419
Period size: 131 Copynumber: 2.0 Consensus size: 131
95360 TTTTAAGAAT
* * *
95370 GAAAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTCTCATGCCTTAAAGTAGT-C
1 GAAAACAATAATATCTAATTATTTCCAATCGAGAATAAATAACCTCTCATGCCTTAAAGTA-TAC
*
95434 ATTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAATTCAATATTGATTCGA
65 ATTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAAATCAATATTGATTCGA
95499 GA
130 GA
* * *
95501 GAAAACAATAATATCTAATTATTTCCAATTGAGAATAAATAACCTCTCATGTCTTAAAGTATATA
1 GAAAACAATAATATCTAATTATTTCCAATCGAGAATAAATAACCTCTCATGCCTTAAAGTATACA
* *
95566 TTTATTACTCTAATCGAAATGAAGAGATATCACTATTTCGTCTTAAAAATCAATATTGATTC
66 TTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAAATCAATATTGATTC
95628 AAGTGTTATT
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
130 1 0.01
131 116 0.99
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (131 bp):
GAAAACAATAATATCTAATTATTTCCAATCGAGAATAAATAACCTCTCATGCCTTAAAGTATACA
TTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAAATCAATATTGATTCGAG
A
Found at i:103672 original size:81 final size:81
Alignment explanation
Indices: 103565--104070 Score: 728
Period size: 81 Copynumber: 6.2 Consensus size: 81
103555 AAAATACAAT
* * * *
103565 ATTAAGCATTTAGTC-TTTCCTCTAAAGGCATTTAGCCTTTCATCCAACTTGAATGATTGGCACC
1 ATTAGGCATTTAATCTTTTACTC-AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACC
*
103629 TTTCTGGCAAATGCACA
65 TTTCTGCCAAATGCACA
* * * * *
103646 ATTAGGCATTTAATCTTTTACTTAAAGGTATTTATCCTTTCATCCAACTTGCATGATTAGCACAT
1 ATTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCT
*
103711 TTCTGCAAAATGCACA
66 TTCTGCCAAATGCACA
* *
103727 TTTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCGAACTTGCATGATTGGCACCT
1 ATTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCT
103792 TTCTGCCAAATGCACA
66 TTCTGCCAAATGCACA
* * ** *
103808 GTTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCGAACTTGCATGATTGTTACGT
1 ATTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCT
103873 TTCTGCCAAATGCACA
66 TTCTGCCAAATGCACA
* * * **
103889 GTTAGGTATTTAATCTTTTACTCACAGGCATTTAGCCTTTCATCCAACTTGCACAATTGGCACCT
1 ATTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCT
103954 TAT-TGCCAAATGCACA
66 T-TCTGCCAAATGCACA
* * *
103970 ATTAGGCATTTAATATTTTACTCAAAGGCATTTAGCTTTTCATCCAACTTGCATGATTGGCACAT
1 ATTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCT
*
104035 TTCTGCCTAATGCACA
66 TTCTGCCAAATGCACA
*
104051 ATTAAGCATTTAATCTTTTA
1 ATTAGGCATTTAATCTTTTA
104071 TTTTAAAACA
Statistics
Matches: 380, Mismatches: 42, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
80 1 0.00
81 373 0.98
82 6 0.02
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.37
Consensus pattern (81 bp):
ATTAGGCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCT
TTCTGCCAAATGCACA
Done.