genome.fa.s1744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001744.1 Hibiscus syriacus cultivar Beakdansim tig00003531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87192

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3548--3574	6	4.5	6	100	0	54	0	51	0	48	1.00
5323--5373	25	2.0	25	100	0	102	23	7	15	52	1.68
5523--5547	2	12.5	2	100	0	50	0	0	48	52	1.00
17051--17117	23	2.9	22	80	8	62	23	28	22	25	1.99
25197--25221	6	4.2	6	100	0	50	36	16	16	32	1.90
32026--32071	22	2.1	22	84	8	58	69	2	4	23	1.17
33794--33932	20	6.8	21	72	4	122	17	18	25	38	1.93
33791--33932	41	3.5	41	98	0	266	18	19	24	38	1.93
33921--33992	22	3.4	22	73	11	87	18	19	25	37	1.94
33942--34007	19	3.3	19	72	12	69	18	19	21	40	1.91
33820--34014	41	4.7	41	91	6	197	17	18	23	39	1.92
33798--33998	82	2.4	81	85	8	248	18	19	23	38	1.93
33791--34015	123	1.8	121	80	11	269	18	18	23	39	1.93
34574--34634	6	10.5	6	98	1	108	0	16	52	31	1.44
34719--34756	20	1.9	20	88	0	58	44	23	23	7	1.79
34724--34785	21	3.0	21	69	2	54	40	27	17	14	1.89
34814--34919	20	5.2	20	67	12	63	35	26	19	17	1.95
34821--34923	41	2.5	41	93	0	170	37	26	19	16	1.92
34821--34927	21	5.2	21	69	4	92	38	27	18	15	1.91
37490--37580	32	2.9	31	82	9	112	35	23	17	24	1.95
37490--37580	31	2.9	32	86	3	121	35	23	17	24	1.95
37653--37712	21	2.9	21	84	0	84	41	20	6	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38530--38580	19	2.7	19	96	0	93	33	25	9	31	1.88
40868--41028	64	2.5	65	86	7	204	33	18	21	26	1.96
41520--41554	18	1.9	18	88	11	54	54	5	17	22	1.64
42446--42760	149	2.1	149	94	2	553	26	17	21	34	1.96
42728--42772	23	2.0	23	90	0	72	22	26	26	24	2.00
45901--46061	64	2.5	65	84	7	186	33	18	20	27	1.96
46551--46585	18	1.9	18	88	11	54	54	5	17	22	1.64
47649--47682	17	2.0	17	94	0	59	32	11	14	41	1.82
47499--47808	166	1.9	167	93	3	536	28	16	20	34	1.94
47776--47820	23	2.0	23	90	0	72	22	26	26	24	2.00
54354--54506	45	3.4	45	92	0	252	41	5	20	31	1.76
56017--56056	2	20.0	2	94	0	71	50	2	0	47	1.14
56326--56391	29	2.2	30	89	2	98	31	28	19	19	1.97
56380--56477	31	3.2	30	78	13	117	32	18	19	29	1.96
57245--57289	21	2.1	21	87	0	63	15	24	28	31	1.96
60807--60876	2	35.0	2	94	0	122	50	1	1	47	1.19
61144--61209	29	2.2	30	89	2	98	31	28	19	19	1.97
61201--61297	31	3.1	31	76	8	115	34	18	17	29	1.94
62061--62105	21	2.1	21	87	0	63	15	24	28	31	1.96
62997--63037	14	2.9	14	88	0	64	56	21	12	9	1.65
63006--63058	24	2.2	24	79	0	61	49	26	15	9	1.74
64118--64221	36	2.9	36	89	4	156	51	13	3	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69181--69221	21	2.0	20	85	4	55	39	0	4	56	1.21
74517--74578	32	1.9	32	90	0	97	16	32	19	32	1.94
80488--80523	14	2.6	14	95	0	63	52	8	8	30	1.61
83056--83201	21	7.0	21	72	16	115	21	20	22	34	1.96
83062--83201	42	3.3	42	95	0	244	22	20	22	35	1.96
83285--83324	6	7.2	6	91	8	59	32	50	17	0	1.47
83949--84022	21	3.6	21	72	17	64	33	24	18	22	1.97
84031--84076	21	2.2	21	96	0	83	21	21	26	30	1.99

Tables:   1

The End!