genome.fa.s1745.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001745.1 Hibiscus syriacus cultivar Beakdansim tig00003532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68395

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372--1665	41	7.1	41	68	12	163	32	22	18	26	1.97
1372--1663	83	3.5	81	82	6	327	32	21	18	26	1.97
1660--2094	74	5.9	74	86	3	563	44	17	6	31	1.75
1699--2093	149	2.7	148	89	2	587	45	17	6	30	1.73
4773--4874	24	4.3	24	86	2	125	22	24	21	31	1.98
4977--5015	19	2.0	20	85	5	53	51	7	12	28	1.67
9006--9033	2	14.0	2	100	0	56	50	0	0	50	1.00
9418--9938	55	9.5	55	88	1	742	34	18	17	29	1.94
13507--13589	20	4.2	20	92	6	141	14	30	40	14	1.86
15537--15574	3	13.0	3	86	5	51	0	28	2	68	1.03
16982--17078	19	5.1	20	77	16	98	17	23	37	21	1.94
16982--17054	37	1.9	39	91	5	123	16	24	36	21	1.94
16982--17078	38	2.5	36	84	14	115	17	23	37	21	1.94
18880--18939	21	2.9	21	78	9	68	55	10	16	18	1.69
18909--18940	13	2.3	15	89	10	50	56	12	12	18	1.67
34201--34243	21	2.0	21	86	0	59	65	4	9	20	1.40
35876--36067	94	2.0	96	86	4	271	49	26	11	12	1.75
36404--36465	12	5.3	12	82	7	65	1	8	46	43	1.42
36404--36465	6	10.7	6	87	3	56	1	8	46	43	1.42
36426--36465	6	6.7	6	88	0	62	2	12	47	37	1.55
36410--36462	18	3.1	17	84	7	63	1	9	47	41	1.47
37509--37655	46	3.2	46	82	5	167	24	20	6	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37676--37881	68	3.0	68	83	5	272	29	23	15	31	1.95
38232--38640	59	6.9	59	93	0	640	30	20	15	33	1.93
38972--39171	94	2.1	94	83	2	251	23	23	16	36	1.94
39041--39117	22	3.8	21	79	11	65	23	31	15	29	1.95
40269--40307	20	2.0	20	100	0	78	51	2	0	46	1.14
40325--40492	30	5.8	30	71	17	97	48	3	4	42	1.41
40325--40392	29	2.3	29	87	10	93	51	2	1	44	1.25
40480--40558	36	2.2	36	86	4	106	44	8	5	41	1.57
40537--40587	15	3.3	15	71	15	50	49	1	5	43	1.38
40604--40654	21	2.4	21	93	0	84	45	1	5	47	1.38
40728--40806	24	3.4	23	76	10	63	44	6	7	41	1.58
40777--40855	20	4.1	20	71	22	62	41	8	7	41	1.64
40784--40824	15	2.6	16	92	7	75	41	4	9	43	1.59
40838--40898	16	3.5	16	71	26	52	40	11	6	40	1.67
40826--40899	37	2.1	36	87	5	105	40	10	6	41	1.66
40758--40883	57	2.2	58	80	11	141	42	9	7	40	1.67
41026--41067	13	3.1	14	82	3	50	35	4	11	47	1.61
40996--41128	54	2.5	54	87	2	189	42	6	6	45	1.55
41215--41463	13	17.9	13	69	19	105	39	4	7	48	1.52
41254--41453	31	6.6	31	82	8	186	40	4	6	49	1.47
41266--41463	18	12.8	16	69	24	99	39	4	6	50	1.46
41318--41550	111	2.1	111	77	13	239	40	6	5	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41573--41625	24	2.2	25	86	3	72	41	5	3	49	1.44
41682--41733	13	3.8	13	78	9	50	42	7	7	42	1.62
41531--41706	83	2.1	82	89	5	266	43	6	3	46	1.47
41688--41721	15	2.3	15	94	0	59	44	8	5	41	1.60
41682--41763	28	2.9	29	80	10	89	42	4	6	46	1.50
41720--41763	18	2.3	20	88	7	65	43	2	4	50	1.35
41749--41805	26	2.2	26	100	0	114	45	3	0	50	1.18
41761--41820	15	3.9	15	72	20	52	48	3	0	48	1.18
41815--41849	17	2.0	18	88	5	54	34	2	2	60	1.26
41978--42024	21	2.3	21	82	10	53	46	2	2	48	1.25
46034--46065	15	2.1	15	94	0	55	6	15	68	9	1.36
53523--53710	32	6.1	30	78	11	175	31	18	19	30	1.96
53523--53710	63	3.0	63	92	3	294	31	18	19	30	1.96
53526--53711	31	6.0	30	76	8	167	31	18	19	30	1.96
56945--57000	21	2.7	21	100	0	112	23	19	21	35	1.96
58390--58555	32	5.3	31	78	12	162	31	18	18	31	1.95
58390--58555	63	2.7	63	96	0	298	31	18	18	31	1.95
58393--58561	31	5.4	31	76	12	175	30	18	18	31	1.95
58567--58638	30	2.4	30	92	0	117	22	19	23	34	1.96

Tables:   1

The End!