Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001746.1 Hibiscus syriacus cultivar Beakdansim tig00003535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81191

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1789--1954
61
2.8
58
79
13
169
46
15
6
31
1.71
5267--5309
21
2.0
21
90
0
68
39
13
4
41
1.66
9721--9760
3
13.3
3
100
0
80
67
0
0
32
0.91
11654--11926
54
5.1
54
89
0
395
32
21
19
25
1.97
12882--12906
11
2.3
11
100
0
50
92
0
0
8
0.40
17398--17431
18
1.9
17
88
5
50
67
32
0
0
0.91
21063--21110
15
3.4
14
80
11
53
66
2
0
31
1.03
22513--22592
3
27.3
3
75
9
76
56
0
0
43
0.99
22502--22580
18
4.2
18
81
15
90
55
0
0
44
0.99
22502--22594
12
8.0
12
78
16
81
53
0
0
46
1.00
22747--23156
76
5.4
76
98
0
784
34
21
19
23
1.96
23831--23907
22
3.5
22
94
0
136
38
14
12
33
1.84
26441--26660
114
1.9
114
92
1
370
30
21
15
32
1.94
33243--33287
21
2.1
21
84
8
56
75
2
0
22
0.91
34001--34048
15
3.4
14
80
11
53
66
2
0
31
1.03
35330--35359
15
2.1
14
93
6
51
23
16
46
13
1.82
35454--35523
3
23.3
3
80
8
72
57
0
0
42
0.99
35454--35511
22
2.4
26
77
19
79
58
0
0
41
0.98
35443--35523
18
4.2
18
79
20
85
55
0
0
44
0.99
36998--37026
15
1.9
15
100
0
58
20
10
34
34
1.87
43128--43159
2
16.0
2
100
0
64
50
0
0
50
1.00
44400--44424
7
3.6
7
100
0
50
72
0
0
28
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44892--44952
12
5.3
12
74
18
51
32
0
1
65
1.02
44933--45050
36
3.4
36
71
17
124
42
0
0
55
1.11
44918--45074
65
2.5
64
92
5
257
40
0
1
56
1.15
45574--45633
31
1.9
31
89
0
93
43
11
5
40
1.63
52704--52811
36
3.0
36
93
0
180
38
21
24
15
1.92
55852--55885
2
16.5
2
93
6
59
2
50
0
47
1.16
66422--66462
12
3.5
12
80
16
50
80
0
2
17
0.82
66397--66475
22
3.6
21
81
8
79
74
2
3
18
1.08
66399--66462
9
7.2
9
75
18
55
76
0
4
18
0.95
66507--66906
38
10.3
38
75
17
321
44
7
3
44
1.49
66497--66863
73
4.8
76
78
14
337
43
7
3
44
1.50
66497--66799
40
7.9
39
79
16
291
43
6
3
45
1.47
67392--67563
85
2.0
85
86
0
236
27
20
19
31
1.97
67498--67627
64
2.0
64
90
0
206
22
18
20
39
1.93
67562--67868
85
3.6
85
88
2
434
24
15
21
38
1.92
69140--69294
83
1.9
84
88
1
240
30
21
18
29
1.97
74343--74463
40
3.0
40
85
2
172
24
15
26
33
1.95

Tables:   1

The End!