genome.fa.s1749.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001749.1 Hibiscus syriacus cultivar Beakdansim tig00003540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174337

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7022--7061	21	1.9	21	90	10	64	50	5	0	45	1.23
30566--30722	20	7.8	20	73	6	93	38	24	17	19	1.92
30625--30722	41	2.4	41	77	6	110	37	22	18	21	1.94
30565--30741	61	2.9	61	76	6	182	39	24	16	18	1.91
30689--30882	20	9.6	20	78	5	194	36	24	19	19	1.95
30689--30882	60	3.2	60	82	0	235	36	24	19	19	1.95
31260--31330	33	2.2	33	94	0	124	11	23	16	47	1.79
31408--31485	41	1.9	41	97	0	147	44	16	25	12	1.83
31409--31484	21	3.7	21	83	3	109	46	17	25	11	1.82
31469--31558	14	5.7	14	72	23	72	44	20	24	11	1.83
31483--31542	19	3.4	19	73	21	76	46	18	21	13	1.83
31464--31561	33	3.0	33	98	0	187	44	19	24	11	1.83
31570--31653	19	4.7	19	81	14	115	10	22	21	45	1.82
31611--31667	14	3.7	14	75	20	60	8	24	22	43	1.81
31592--31675	33	2.5	33	100	0	168	9	23	20	46	1.80
33152--33227	37	2.1	37	97	0	143	26	17	32	23	1.96
33406--33781	93	4.1	93	99	0	736	22	12	19	46	1.83
33829--33957	19	7.3	19	73	17	116	45	27	17	9	1.78
33865--33957	33	2.8	32	90	4	141	46	26	18	8	1.78
33829--33957	52	2.5	52	74	12	138	45	27	17	9	1.78
33953--34087	19	7.6	19	75	16	128	11	19	23	45	1.82
33975--34031	14	3.7	14	77	20	60	10	21	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33958--34050	33	2.8	33	95	0	168	10	20	21	47	1.80
36010--36045	14	2.6	14	95	0	63	33	0	22	44	1.53
36151--36248	19	5.4	19	84	13	143	45	17	22	14	1.84
36151--36266	53	2.2	53	98	1	225	43	18	24	13	1.86
36273--36425	33	4.5	33	74	16	159	13	22	17	45	1.84
36295--36511	19	12.4	19	77	19	240	13	21	18	46	1.83
36273--36483	52	4.0	52	99	0	413	13	23	17	45	1.83
36314--36511	33	5.8	33	76	14	197	13	21	18	46	1.83
38792--38816	12	2.1	12	100	0	50	0	28	0	72	0.86
39719--39928	20	10.5	20	84	2	206	19	18	24	37	1.94
39895--39992	20	4.8	20	77	3	79	21	18	23	36	1.95
39895--40051	61	2.6	60	80	7	176	19	17	25	38	1.93
39895--40051	41	3.9	41	70	14	110	19	17	25	38	1.93
40804--40864	28	2.2	28	88	5	88	39	1	6	52	1.37
46417--46457	2	20.5	2	100	0	82	51	0	0	48	1.00
48841--48871	2	16.0	2	93	6	55	48	0	0	51	1.00
51930--51956	2	13.5	2	100	0	54	51	0	0	48	1.00
53310--53358	21	2.3	21	100	0	98	32	26	18	22	1.97
54144--54179	3	12.0	3	100	0	72	66	0	0	33	0.92
58208--58253	22	2.0	24	83	8	60	15	28	4	52	1.61
60321--60353	12	2.8	12	82	17	50	75	0	0	24	0.80
68925--68955	15	2.1	15	100	0	62	32	0	38	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71135--71171	18	2.1	18	94	0	65	24	16	5	54	1.63
72872--72915	22	2.0	22	95	0	79	27	6	13	52	1.66
76418--76447	13	2.2	14	94	5	53	40	13	26	20	1.89
86816--86872	29	2.0	29	96	3	107	35	14	10	40	1.80
88910--88934	2	12.5	2	100	0	50	52	0	0	48	1.00
90026--90054	14	2.1	14	100	0	58	20	20	13	44	1.85
94778--94802	11	2.3	11	100	0	50	80	0	0	20	0.72
100396--100428	15	2.1	16	88	5	50	45	15	27	12	1.81
100412--100479	31	2.2	31	86	2	93	41	11	25	22	1.87
104428--104477	14	3.3	16	74	23	54	62	4	0	34	1.14
105251--105334	33	2.6	32	75	7	80	53	7	2	36	1.41
105320--105382	31	2.1	30	85	8	83	46	4	0	49	1.23
107376--107442	18	3.9	18	86	5	77	56	0	0	43	0.99
112769--112884	15	7.5	15	66	5	52	22	23	25	29	1.99
112771--112845	30	2.5	30	88	0	114	24	24	24	28	2.00
112826--112863	18	2.1	18	90	0	58	26	18	26	28	1.98
112855--113041	63	2.9	63	84	5	214	21	26	26	25	2.00
115836--116013	89	2.0	89	93	0	302	38	10	17	33	1.84
116899--116942	22	2.0	22	100	0	88	27	27	13	31	1.94
127151--127209	31	1.9	31	89	0	91	50	3	13	32	1.58
134371--134402	15	2.1	16	94	5	57	12	28	6	53	1.62
136832--136881	25	2.0	25	92	7	84	24	10	26	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146618--146659	21	2.0	21	85	0	57	14	23	19	42	1.87
149862--149907	23	1.9	25	86	8	69	56	0	2	41	1.11
170076--170123	15	3.2	15	83	13	55	75	4	0	20	0.97
173359--173394	15	2.5	15	90	4	56	16	22	8	52	1.70

Tables:   1

The End!