genome.fa.s175.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000175.1 Hibiscus syriacus cultivar Beakdansim tig00000306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129333

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4768--4810	17	2.6	17	86	13	56	37	0	0	62	0.95
6403--6458	21	2.7	21	97	0	103	44	8	14	32	1.76
7825--7881	25	2.4	23	79	5	60	45	3	17	33	1.65
7963--8051	30	2.9	30	90	6	135	24	19	21	34	1.96
11024--11072	22	2.2	22	89	7	73	24	20	20	34	1.96
11037--11085	22	2.2	22	85	0	71	28	18	20	32	1.96
17732--17791	24	2.5	24	89	5	95	38	15	20	26	1.91
20668--20695	2	14.0	2	100	0	56	50	0	0	50	1.00
21989--22049	32	1.9	32	96	0	113	52	18	4	24	1.65
22152--22334	63	2.8	64	78	9	192	50	10	10	28	1.70
22689--22853	75	2.2	77	79	8	176	42	9	4	44	1.55
23068--23111	21	2.1	21	87	4	63	40	4	0	54	1.21
24223--24263	21	2.0	21	85	9	57	53	2	43	0	1.13
26921--26962	19	2.2	19	100	0	84	30	7	16	45	1.74
31600--31631	7	4.9	7	88	11	50	15	43	0	40	1.47
31601--31631	13	2.4	13	100	0	62	16	45	0	38	1.47
34267--34551	43	6.7	43	85	2	367	30	18	25	24	1.98
37914--38296	41	9.2	41	82	2	383	34	18	19	28	1.95
37914--38236	124	2.6	124	87	4	445	34	18	19	27	1.95
37931--38296	83	4.4	82	83	4	382	34	18	18	28	1.95
38355--38452	43	2.3	44	80	5	110	32	22	18	26	1.97
39702--39818	41	2.8	43	83	5	134	34	19	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39828--39960	42	3.2	41	78	17	166	25	18	21	34	1.96
39849--39980	40	3.2	40	80	16	164	23	20	21	34	1.96
40249--40287	17	2.2	18	86	13	55	64	0	0	35	0.94
47100--47191	21	4.4	21	83	0	121	21	43	16	18	1.88
47100--47187	42	2.1	42	93	0	149	21	43	17	18	1.88
47105--47226	63	1.9	63	83	0	154	22	41	16	19	1.90
47267--47331	21	3.1	21	93	0	103	21	49	10	18	1.78
47276--47421	42	3.5	42	79	5	134	24	45	8	21	1.79
47276--47376	21	4.8	21	90	4	125	23	43	9	22	1.83
47303--47391	21	4.2	21	84	8	92	24	42	8	23	1.83
47366--47520	21	7.4	21	82	0	175	21	49	7	20	1.74
47384--47520	42	3.3	42	89	0	202	21	49	8	20	1.74
47366--47526	63	2.6	63	84	0	196	21	49	7	21	1.73
47320--47544	63	3.6	63	77	0	189	22	46	8	22	1.78
47555--47616	21	3.0	21	80	4	72	29	35	9	25	1.88
47909--47954	21	2.2	21	84	0	56	19	39	4	36	1.72
50877--50915	20	2.0	20	100	0	78	41	23	15	20	1.90
58014--58078	33	2.0	33	84	0	85	43	18	10	27	1.83
61180--61235	18	3.1	18	89	0	85	23	7	42	26	1.79
61988--62107	35	3.3	36	86	5	163	31	4	19	45	1.69
61968--62107	35	4.0	36	81	10	157	31	4	18	45	1.69
62510--62548	16	2.4	16	91	4	60	33	7	23	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62510--62543	16	2.1	17	94	5	61	35	5	23	35	1.79
66624--66687	21	3.4	20	66	29	59	31	4	18	45	1.70
66616--66734	35	3.3	36	89	5	179	32	5	18	43	1.72
67423--67502	3	25.7	3	84	5	97	38	0	0	61	0.96
67937--67978	15	2.8	15	89	7	59	73	2	21	2	1.06
67937--67978	20	2.1	20	83	16	52	73	2	21	2	1.06
80261--80313	16	3.2	16	92	5	88	84	0	15	0	0.61
80258--80324	26	2.6	25	86	9	82	85	0	14	0	0.61
80255--80325	17	4.2	16	89	8	97	83	0	16	0	0.66
81463--81897	83	5.2	83	92	1	710	27	13	22	36	1.92
82714--82981	113	2.4	113	94	0	455	39	13	20	26	1.89
82879--83374	99	5.1	99	97	1	810	34	14	20	30	1.93
83443--83498	17	3.2	17	69	18	51	51	8	19	19	1.73
83268--83529	116	2.3	113	80	10	306	35	15	18	30	1.92
83481--83664	84	2.2	82	79	3	181	38	15	17	28	1.91
83828--83915	3	28.7	3	83	4	86	43	0	0	56	0.99
84340--84381	15	2.8	15	89	7	59	76	2	21	0	0.90
84340--84381	20	2.1	20	86	8	59	76	2	21	0	0.90
89680--89855	49	3.6	49	74	6	183	38	24	16	21	1.93
89657--89810	51	3.1	51	73	7	179	39	21	16	22	1.92
89657--89854	100	2.0	100	93	0	342	38	22	16	22	1.92
93675--93762	23	3.8	23	71	14	81	30	23	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93876--93942	23	2.9	23	97	0	125	28	26	26	17	1.98
94018--94101	31	2.8	31	87	7	111	30	23	3	41	1.71
102805--102906	29	3.5	29	85	5	143	29	4	8	56	1.50
103857--104218	188	2.0	181	95	4	645	36	7	11	44	1.69
107461--107501	8	5.2	8	82	5	57	34	0	29	36	1.58
107582--108177	128	4.7	127	92	5	1025	20	25	20	33	1.97
108568--108656	32	2.7	34	86	5	121	37	3	4	55	1.37
109197--109280	21	4.0	20	90	3	96	21	26	33	19	1.97
111020--111070	22	2.3	23	74	16	54	64	3	1	29	1.22
122136--122290	55	2.8	56	66	19	126	45	4	23	27	1.72

Tables:   1

The End!