genome.fa.s1750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001750.1 Hibiscus syriacus cultivar Beakdansim tig00003541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146409

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6597--6657	31	2.0	31	93	0	104	34	14	26	24	1.94
6604--6674	31	2.3	31	87	0	97	36	11	23	28	1.89
7729--7789	31	2.1	30	82	11	74	34	14	24	26	1.94
7738--7818	31	2.6	30	84	5	99	30	12	29	27	1.93
10057--10124	35	1.9	35	93	0	118	45	17	14	22	1.85
19650--19685	2	18.0	2	100	0	72	50	0	0	50	1.00
21574--21666	12	7.8	12	70	9	64	51	18	11	18	1.75
21579--21666	24	3.7	24	80	6	97	51	18	11	19	1.76
21572--21680	48	2.3	48	82	3	130	51	17	12	18	1.76
21621--21686	24	2.8	24	76	2	71	50	15	13	21	1.78
23373--23445	36	2.0	36	94	0	128	28	19	9	42	1.82
24097--24143	13	3.3	13	78	21	58	12	21	46	19	1.82
24080--24143	30	2.1	29	83	11	76	15	23	42	18	1.89
24103--24147	17	2.6	18	85	7	74	8	20	51	20	1.73
27274--27317	23	1.9	23	85	0	61	27	9	18	45	1.79
27206--27809	148	4.1	148	88	0	861	28	11	22	37	1.88
27682--27907	116	1.9	116	90	1	355	24	13	20	41	1.88
29739--29816	23	3.3	23	81	1	84	33	21	17	26	1.96
29826--30040	103	2.1	103	97	0	403	36	23	13	26	1.92
32902--32927	12	2.2	12	100	0	52	19	7	0	73	1.07
36573--36650	23	3.3	23	81	1	84	33	20	19	26	1.96
36660--36868	103	2.1	97	91	5	328	36	23	12	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42006--42050	23	2.0	23	90	0	72	24	26	26	22	2.00
42018--42332	149	2.1	149	98	1	605	34	21	17	26	1.95
43213--43247	18	1.9	18	88	11	54	22	17	5	54	1.64
43734--43858	64	1.9	66	88	6	193	27	21	16	34	1.95
43734--43877	64	2.2	64	85	8	186	27	22	16	34	1.95
43734--43894	64	2.5	61	80	12	171	26	22	17	32	1.96
45666--45707	2	21.0	2	100	0	84	50	0	0	50	1.00
47281--47325	23	2.0	23	86	0	63	24	24	26	24	2.00
47301--47605	149	2.1	147	97	1	574	35	21	16	26	1.95
48152--48179	2	14.0	2	100	0	56	50	0	0	50	1.00
48510--48544	18	1.9	18	88	11	54	22	17	5	54	1.64
49036--49196	64	2.5	63	85	8	200	26	21	18	33	1.96
51383--51430	3	16.0	3	100	0	96	66	0	0	33	0.92
51845--51872	13	2.2	13	100	0	56	39	7	7	46	1.59
53654--53694	21	2.0	21	85	9	57	58	0	9	31	1.31
54792--55065	144	1.9	144	95	0	494	33	10	17	38	1.85
60798--60843	18	2.6	18	89	3	67	36	6	28	28	1.82
63088--63122	17	2.1	17	100	0	70	31	5	22	40	1.78
63266--63325	14	4.1	14	73	12	57	71	0	1	26	0.95
64470--64503	15	2.2	16	89	5	52	64	0	2	32	1.08
65918--65963	18	2.6	18	85	0	65	23	26	15	34	1.94
69531--69587	29	1.9	29	86	10	80	26	19	7	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69672--69863	93	2.1	92	89	4	287	23	21	5	49	1.70
69554--70019	44	10.6	44	77	9	384	24	19	6	48	1.73
70804--70841	19	2.1	18	90	5	58	76	0	5	18	0.97
70967--71020	27	2.0	27	82	7	65	38	9	14	37	1.79
72376--72642	92	2.9	91	98	1	509	35	13	17	32	1.89
72376--72666	90	3.2	90	94	2	474	36	13	17	33	1.88
72743--72772	3	10.3	3	92	7	53	70	0	0	30	0.88
73020--73058	2	19.0	2	89	5	60	46	2	0	51	1.14
80462--80552	42	2.2	42	95	0	164	27	18	24	29	1.98
80566--80698	41	3.3	40	72	13	119	33	15	21	30	1.94
82733--82774	21	2.0	21	86	9	59	38	16	35	9	1.81
82749--82807	30	2.0	30	86	0	82	35	23	28	11	1.91
83592--83616	8	3.1	8	100	0	50	36	24	24	16	1.94
89934--90065	21	6.3	21	81	1	113	38	18	38	3	1.69
89942--90061	42	2.9	42	83	5	136	37	19	39	4	1.71
90511--90592	43	1.9	43	89	0	128	34	25	19	20	1.96
90555--90679	43	2.9	44	86	3	173	26	26	16	30	1.97
90516--90679	86	1.9	86	80	0	193	28	25	18	28	1.98
90661--90710	27	1.9	25	84	8	64	10	18	24	48	1.78
105699--105768	27	2.6	27	100	0	140	17	38	8	35	1.80
107052--107096	23	2.0	23	90	0	72	24	26	26	22	2.00
107064--107378	149	2.1	149	95	1	569	33	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108278--108322	23	2.0	23	86	0	63	26	28	24	20	1.99
108301--108753	149	3.0	149	97	0	852	34	19	17	28	1.94
108859--108916	31	1.9	30	82	3	71	32	22	6	37	1.81
109453--109487	18	1.9	18	88	11	54	22	17	5	54	1.64
110068--110112	21	2.1	21	87	0	63	15	24	28	31	1.96
113241--113284	22	2.0	22	86	0	61	27	27	25	20	1.99
113263--113711	149	3.0	148	97	1	832	34	19	17	28	1.94
113817--113874	31	1.9	30	82	3	71	32	22	6	37	1.81
114408--114442	18	1.9	18	88	11	54	22	17	5	54	1.64
115019--115063	21	2.1	21	87	0	63	15	24	28	31	1.96
116933--116977	21	2.1	21	87	0	63	15	24	28	31	1.96
118122--118191	27	2.6	27	100	0	140	17	38	8	35	1.80
120251--120989	378	2.0	376	81	5	877	25	23	16	33	1.96
120629--122049	399	3.6	392	75	9	1251	26	23	17	32	1.96
129202--129230	3	9.7	3	100	0	58	34	0	0	65	0.93
142737--142885	66	2.2	67	96	3	282	30	14	16	38	1.88
146230--146262	17	2.0	17	88	5	50	39	15	6	39	1.72

Tables:   1

The End!