Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001752.1 Hibiscus syriacus cultivar Beakdansim tig00003543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66782

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
673--699
14
1.9
14
100
0
54
37
3
0
59
1.15
1620--1652
15
2.1
16
88
5
50
36
0
0
63
0.95
3978--4058
35
2.3
32
77
20
83
25
8
9
55
1.61
7483--7523
16
2.6
16
88
7
57
68
2
4
24
1.22
8820--8855
17
2.1
17
100
0
72
27
22
11
38
1.88
14631--14679
20
2.5
20
89
0
80
48
4
38
8
1.52
27807--28248
134
3.3
133
83
3
503
32
19
17
30
1.95
28253--28303
22
2.3
22
100
0
102
25
27
21
25
1.99
33492--33550
29
2.0
29
100
0
118
44
18
10
27
1.82
35014--35042
2
14.5
2
100
0
58
51
0
0
48
1.00
36116--36142
2
13.5
2
100
0
54
48
0
0
51
1.00
36214--36241
4
7.0
4
100
0
56
75
0
25
0
0.81
38850--38884
16
2.2
16
95
5
63
74
0
8
17
1.06
38856--38888
16
2.1
16
88
11
50
69
0
12
18
1.18
39762--39813
17
3.0
17
77
2
50
59
9
3
26
1.46
39835--39909
39
1.9
39
100
0
150
40
16
6
37
1.74
40135--40238
17
6.1
17
66
18
63
37
0
13
48
1.49
40179--40310
60
2.1
63
85
9
184
43
0
7
49
1.31
40216--40310
22
4.5
22
76
12
83
43
0
7
49
1.30
40209--40270
22
2.7
23
82
14
74
43
0
4
51
1.23
40253--40326
2
38.0
2
75
20
50
47
0
5
47
1.25
40232--40323
39
2.3
40
83
9
118
46
0
5
47
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40178--40326
60
2.6
59
82
11
166
44
0
6
48
1.29
40332--40373
10
4.6
9
80
16
50
16
0
7
76
1.00
40332--40377
19
2.7
17
77
16
51
17
0
6
76
1.00
44853--44891
20
2.0
20
85
10
53
30
23
17
28
1.97
46158--46199
6
7.0
6
97
0
75
47
16
19
16
1.83
49654--49693
21
1.9
21
89
0
62
10
25
40
25
1.86
53543--53582
21
1.9
21
85
10
55
35
10
2
52
1.48
63180--63223
21
2.1
21
86
0
61
27
15
18
38
1.91

Tables:   1

The End!