Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001753.1 Hibiscus syriacus cultivar Beakdansim tig00003547_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39948

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5626--5696
13
5.0
14
79
16
58
33
5
2
57
1.37
5626--5757
43
3.1
43
74
9
119
34
10
2
53
1.48
5688--5758
28
2.5
28
80
13
74
32
15
1
50
1.53
5638--5757
7
16.9
7
70
19
63
33
11
1
53
1.47
5769--6705
473
2.0
470
90
4
1485
50
5
11
31
1.63
6754--6790
2
19.0
2
94
5
67
48
0
0
51
1.00
7195--7234
20
1.9
21
85
10
55
37
30
10
22
1.87
7450--7519
34
2.1
32
86
5
95
32
15
30
21
1.94
7914--8274
2
183.0
2
67
23
135
51
2
3
42
1.34
7907--8241
145
2.3
141
75
11
311
51
2
4
41
1.36
8346--8474
8
17.1
8
74
20
127
53
0
9
36
1.39
8350--8485
43
3.1
41
72
26
120
53
1
8
36
1.40
8349--8488
41
3.2
43
84
11
144
52
1
8
37
1.41
8575--8648
18
4.2
17
78
16
71
55
2
8
33
1.44
8005--8620
16
38.4
16
68
22
104
52
1
7
38
1.40
8753--9294
24
23.9
23
70
21
214
36
7
2
53
1.43
8755--9293
6
81.8
6
69
20
107
36
7
2
53
1.43
8910--9043
2
66.0
2
66
21
57
41
8
0
49
1.38
8752--9277
8
73.1
7
67
26
99
36
7
2
53
1.43
8998--9209
21
10.6
18
72
22
78
35
8
1
54
1.40
8852--9285
157
2.7
154
82
13
470
37
8
2
52
1.43
8903--9294
101
3.8
101
75
18
259
37
7
1
52
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9400--9455
20
2.8
21
81
15
73
48
1
0
50
1.11
9752--9916
73
2.3
73
86
5
235
29
25
20
24
1.99
11683--11725
21
2.0
21
100
0
86
27
9
34
27
1.88
14270--14312
17
2.5
17
92
0
59
44
4
13
37
1.65
14270--14306
17
2.2
17
100
0
74
51
5
10
32
1.60
15569--15629
21
3.0
21
85
2
79
19
27
18
34
1.95
18061--18222
73
2.2
72
86
5
229
29
24
20
25
1.99
18903--18970
9
7.8
9
73
15
54
52
2
0
44
1.16
18921--18962
11
3.9
11
84
6
59
57
0
0
42
0.99
18896--19015
20
5.7
21
69
21
81
48
4
2
45
1.35
21263--21301
2
19.5
2
94
0
69
48
0
2
48
1.15
25839--25890
7
8.0
7
76
20
51
55
0
0
44
0.99
25839--25890
17
3.5
15
80
14
63
55
0
0
44
0.99
25851--25892
17
2.3
18
92
8
68
54
0
0
45
0.99
25851--25892
6
7.0
6
78
10
50
54
0
0
45
0.99
26263--26294
14
2.3
14
94
0
55
37
9
0
53
1.34
26960--27282
160
2.0
158
88
1
477
31
17
15
34
1.92
33771--33817
2
23.5
2
100
0
94
51
0
0
48
1.00
34536--34662
46
2.8
46
91
3
213
37
7
22
33
1.81
36949--36999
11
4.6
11
87
0
75
86
1
11
0
0.66
36946--36999
18
3.2
16
80
12
63
87
1
11
0
0.63
36948--36998
6
8.8
6
81
14
54
86
1
11
0
0.66

Tables:   1

The End!