Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001755.1 Hibiscus syriacus cultivar Beakdansim tig00003551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88219

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3005--3094
3
30.7
3
81
8
105
37
2
0
60
1.09
4070--4099
2
15.0
2
100
0
60
50
0
0
50
1.00
11955--12135
83
2.2
83
91
3
294
28
13
20
37
1.91
13577--13631
22
2.5
22
87
0
83
32
12
16
38
1.86
14029--14538
113
4.5
113
95
1
905
37
14
19
28
1.91
14471--14606
68
2.0
68
100
0
272
33
19
17
29
1.95
14383--14718
181
1.9
180
96
1
620
36
14
20
28
1.91
14245--14830
294
2.0
292
97
1
1102
36
14
19
29
1.92
14539--15324
225
3.5
226
95
2
1375
37
12
20
29
1.90
14539--15324
112
6.9
113
96
1
1375
37
12
20
29
1.90
15573--15666
3
30.7
3
80
8
100
38
2
0
59
1.09
16054--16088
18
1.9
18
88
0
52
80
5
11
2
1.00
18169--18199
2
15.5
2
100
0
62
51
0
0
48
1.00
18535--18581
24
2.0
24
87
8
69
38
14
8
38
1.77
18596--18640
20
2.3
21
81
14
60
57
0
4
37
1.19
18599--18641
19
2.3
19
88
8
61
58
0
4
37
1.19
19018--19140
58
2.1
55
81
14
133
36
10
16
36
1.83
25132--25192
27
2.3
28
81
15
69
31
29
22
16
1.96
25336--25420
3
28.3
3
95
0
143
34
3
0
62
1.12
25419--25463
22
2.1
21
84
8
56
62
2
0
35
1.08
26770--26805
19
1.9
19
94
5
65
22
0
5
72
1.05
26833--26875
22
2.0
21
86
4
59
37
2
2
58
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38210--38270
5
13.0
5
81
10
51
85
0
14
0
0.60
38207--38270
7
8.9
7
78
13
58
84
0
15
0
0.63
38207--38270
6
11.0
6
83
11
64
84
0
15
0
0.63
38212--38255
1
44.0
1
81
0
52
90
0
9
0
0.44
39413--39900
84
5.8
84
97
0
922
28
14
21
35
1.93
40603--41838
113
11.0
113
91
0
1949
37
13
18
30
1.90
40603--41838
226
5.5
226
96
0
2179
37
13
18
30
1.90
40603--41838
564
2.2
564
91
1
2010
37
13
18
30
1.90
42160--42260
3
33.3
3
93
2
175
33
1
0
64
1.05
42259--42303
22
2.1
21
84
8
56
62
2
0
35
1.08
43615--43650
19
1.9
19
94
5
65
22
0
5
72
1.05
43679--43721
22
2.0
21
86
4
59
37
2
2
58
1.24
49427--49788
183
2.0
182
90
0
571
41
11
13
33
1.80
60316--60345
2
15.0
2
100
0
60
50
0
0
50
1.00
61256--61440
91
2.0
92
97
1
354
30
10
13
45
1.76
62023--62093
37
2.0
36
83
10
92
54
16
1
26
1.50
65630--65677
14
3.7
14
73
21
50
66
0
2
31
1.03
65711--65762
2
26.0
2
100
0
104
50
0
0
50
1.00
66076--66138
26
2.6
25
81
18
87
57
3
0
39
1.15
66416--66581
84
2.0
83
84
1
215
30
16
7
45
1.74
66747--66779
14
2.4
14
90
5
50
45
6
6
42
1.53
66895--66932
19
2.1
19
85
14
53
47
2
0
50
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70338--70412
18
3.9
18
80
13
87
30
33
18
17
1.94
73101--73517
224
1.9
228
87
6
627
29
13
17
40
1.87
74792--74853
29
2.1
29
82
5
72
25
4
3
66
1.27
75751--75780
13
2.3
13
94
0
51
43
0
0
56
0.99
75882--75911
16
1.9
15
93
6
51
53
10
3
33
1.51

Tables:   1

The End!