genome.fa.s1757.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001757.1 Hibiscus syriacus cultivar Beakdansim tig00003553_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64574

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--147	20	2.4	19	82	10	67	53	10	17	19	1.72
1--355	178	2.0	177	90	2	561	42	14	17	26	1.87
2412--2440	15	1.9	15	100	0	58	20	6	55	17	1.65
2525--2576	20	2.5	21	84	6	79	44	9	30	15	1.78
2525--2587	20	3.1	20	76	15	58	42	9	30	17	1.81
4426--4473	19	2.7	18	87	9	71	31	2	10	56	1.45
4760--4792	16	2.1	16	100	0	66	48	33	6	12	1.65
6246--6309	23	2.8	23	88	2	94	34	6	20	39	1.78
5874--7156	472	2.7	478	86	11	1873	41	7	10	39	1.70
6686--6758	23	3.2	23	94	0	119	34	4	21	39	1.73
7405--7467	23	2.7	23	92	0	99	38	20	4	36	1.74
7890--7951	23	2.7	23	92	2	99	38	19	4	37	1.73
7157--8294	482	2.4	480	94	4	2059	41	10	7	40	1.69
8298--8353	25	2.2	25	100	0	112	37	12	10	39	1.78
8750--9634	183	4.8	183	97	0	1662	33	16	14	35	1.90
10838--10888	3	17.0	3	83	0	66	27	31	3	37	1.75
12369--13729	200	6.9	199	94	3	2362	30	17	14	37	1.90
12369--13729	393	3.5	393	95	1	2428	30	17	14	37	1.90
12369--13729	591	2.3	587	94	3	2358	30	17	14	37	1.90
13836--13896	19	3.3	18	88	2	59	52	11	1	34	1.47
13848--13896	19	2.6	19	96	0	89	55	10	2	32	1.45
15687--15752	33	2.0	33	90	0	105	22	48	0	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15786--15850	21	3.1	21	93	0	103	16	30	10	41	1.83
17864--17916	24	2.2	24	83	6	63	26	7	13	52	1.66
18061--18119	20	3.0	19	78	9	64	22	15	6	55	1.63
18242--18287	20	2.3	19	89	10	74	17	17	8	56	1.65
18027--18500	181	2.6	182	88	1	675	26	16	13	43	1.85
19021--19062	21	2.1	21	86	8	61	52	7	16	23	1.68
19088--19634	263	2.1	264	87	1	765	37	11	16	34	1.85
19845--20104	75	3.5	75	68	12	219	40	6	13	38	1.71
19876--20180	148	2.1	148	89	0	457	39	6	16	37	1.76
21015--21174	78	2.1	78	86	2	223	35	13	12	38	1.83
21098--21313	101	2.1	101	84	0	270	38	12	10	38	1.78
23638--23666	3	9.7	3	100	0	58	34	0	0	65	0.93
32389--32569	64	2.8	63	84	3	227	27	16	26	29	1.97
32517--32567	19	2.7	19	85	8	70	25	15	35	23	1.94
32410--32569	65	2.5	65	87	3	225	28	15	26	30	1.96
37874--37913	21	1.9	21	85	10	55	35	10	2	52	1.48
39840--40020	64	2.8	65	83	2	168	28	16	25	29	1.96
39968--40018	19	2.7	19	85	8	70	25	15	35	23	1.94
39861--40020	65	2.5	65	85	3	207	28	15	25	30	1.95
39862--40069	65	3.2	63	80	11	190	28	16	24	30	1.96
40680--40728	20	2.5	20	93	0	80	20	28	16	34	1.94
40429--40983	271	2.0	271	89	2	846	31	17	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40874--40967	42	2.3	41	81	5	109	23	18	22	36	1.95
41000--41093	38	2.4	40	83	3	120	24	13	19	42	1.87
41146--41448	89	3.4	88	84	1	390	33	20	17	27	1.96
41441--41596	36	4.3	37	89	3	217	41	20	17	20	1.91
41441--41596	73	2.1	73	87	0	222	41	20	17	20	1.91
41797--41973	47	3.6	47	70	19	153	27	16	22	33	1.95
41683--42030	102	3.4	100	83	5	387	27	19	19	33	1.96
41931--42281	183	1.9	184	88	2	528	33	19	20	25	1.97
42637--42671	19	1.9	18	88	11	54	28	22	17	31	1.96
43484--43525	16	2.4	17	80	15	50	21	4	7	66	1.35
44148--44189	15	2.6	16	82	17	52	33	4	0	61	1.17
45940--46104	87	1.9	88	94	1	296	35	11	11	41	1.78
50871--50960	3	30.3	3	77	16	55	58	1	3	36	1.22
51172--51764	123	4.5	137	82	9	467	26	19	15	39	1.91
51448--51778	123	2.7	123	93	0	554	25	19	15	39	1.91
51775--51962	73	2.6	73	93	0	322	38	11	15	34	1.84
56386--56435	10	4.8	10	83	9	64	2	20	0	78	0.86
58325--58354	12	2.6	12	94	5	53	50	10	16	23	1.75
58317--58375	31	1.9	31	85	0	82	45	13	20	20	1.84
58520--58604	43	2.0	42	90	2	134	36	22	8	32	1.84
58614--58659	24	1.9	24	82	8	58	28	13	15	43	1.83
59074--59176	36	2.9	36	88	0	134	28	10	19	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60746--60786	17	2.4	17	84	12	57	46	0	2	51	1.14
62100--62131	15	2.1	15	94	0	55	31	25	18	25	1.98
62246--62325	3	26.0	3	79	14	56	58	0	3	37	1.16
62281--62318	10	3.8	10	83	10	51	65	0	5	28	1.14
62402--62430	13	2.2	13	100	0	58	48	0	0	51	1.00
62349--62653	116	2.6	116	85	9	376	50	5	4	39	1.47
62646--62683	2	19.0	2	94	0	67	47	0	2	50	1.15

Tables:   1

The End!