Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001758.1 Hibiscus syriacus cultivar Beakdansim tig00003554_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55715

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11359--11691
19
18.8
18
72
20
210
41
0
2
55
1.19
11387--11677
38
7.8
38
76
19
253
42
0
1
54
1.15
11359--11692
90
3.6
91
78
15
291
41
0
2
55
1.19
11398--11687
74
4.0
76
75
16
274
42
0
1
55
1.15
11387--11654
2
146.5
2
71
23
200
43
0
1
54
1.14
18452--18626
86
2.0
85
92
4
289
24
21
21
32
1.98
20579--20831
84
3.0
84
97
1
463
24
22
22
31
1.99
22160--22334
95
1.8
95
97
0
332
29
23
16
30
1.96
25285--25321
15
2.4
15
90
4
56
40
10
5
43
1.63
25624--26038
180
2.3
178
78
5
395
39
9
10
39
1.73
25827--26622
416
1.9
417
88
4
1221
39
8
8
43
1.66
29617--29656
21
1.9
21
94
0
71
30
15
7
47
1.72
29651--29749
33
3.0
33
94
1
164
32
7
15
45
1.73
29735--29789
13
4.2
13
75
13
58
34
3
12
49
1.59
29985--30041
21
2.7
21
91
0
96
19
26
26
28
1.99
30215--30262
16
2.9
16
75
6
51
31
14
8
45
1.74
32817--32854
17
2.2
17
100
0
76
36
10
23
28
1.88
33989--34051
22
2.9
22
83
9
76
26
19
25
28
1.98
33989--34051
21
3.0
20
84
11
74
26
19
25
28
1.98
36732--36904
95
1.8
95
97
0
328
30
22
17
30
1.97
43947--43977
14
2.2
14
100
0
62
51
6
12
29
1.65
45230--45292
22
3.0
20
83
6
72
26
20
23
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46508--46546
20
2.0
19
85
5
51
25
2
33
38
1.70
46992--47050
27
2.2
27
96
0
109
33
6
23
35
1.82
49664--49697
2
17.0
2
100
0
68
50
0
0
50
1.00
50333--50373
21
2.0
20
90
4
64
26
21
26
24
2.00
52675--52884
82
2.5
82
86
6
280
32
23
21
22
1.98

Tables:   1

The End!