genome.fa.s1759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001759.1 Hibiscus syriacus cultivar Beakdansim tig00003555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76325

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4474--4525	19	2.7	19	100	0	104	17	17	34	30	1.93
4430--4590	84	1.9	83	89	3	252	27	18	24	29	1.98
4409--4605	83	2.4	81	79	11	236	27	18	24	28	1.98
9033--9209	88	2.1	85	91	5	286	41	14	11	32	1.82
14699--14753	21	2.5	22	80	16	62	30	23	14	30	1.94
17317--17351	18	1.9	18	88	0	52	5	31	0	62	1.18
17323--17356	12	2.8	12	90	0	59	5	32	0	61	1.20
23132--23168	2	18.5	2	100	0	74	48	0	0	51	1.00
26079--26126	24	2.0	24	100	0	96	20	12	12	54	1.70
27941--28419	82	5.8	82	88	3	647	34	19	11	35	1.87
27941--28451	249	2.1	249	89	1	792	34	19	11	35	1.87
27941--28419	167	2.9	164	84	4	638	34	19	11	35	1.87
38588--38626	20	2.0	20	94	0	69	23	23	25	28	1.99
51945--52058	34	3.1	38	83	11	155	33	21	20	24	1.97
52044--52471	215	2.0	215	95	0	777	33	16	19	31	1.94
52512--52536	13	1.9	13	100	0	50	32	24	20	24	1.98
52628--52833	53	3.9	53	83	3	263	29	21	26	22	1.99
56320--56410	33	2.8	33	96	0	164	31	16	9	41	1.81
63490--63557	20	3.4	20	89	0	109	36	23	20	19	1.95
64412--64465	24	2.2	24	93	0	90	20	18	20	40	1.91
66880--66968	20	4.4	20	87	2	126	34	23	22	19	1.96
66973--67018	19	2.4	19	96	0	83	50	17	17	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66940--67045	52	2.0	54	85	7	146	45	17	20	16	1.86
67195--67231	14	2.6	14	86	0	56	48	21	0	29	1.50
68578--68686	42	2.6	42	76	5	114	22	19	36	21	1.95
69166--69319	20	8.4	20	72	18	102	41	21	18	18	1.90
69206--69299	34	2.8	33	81	3	107	42	22	19	15	1.89
69206--69286	33	2.4	33	83	2	90	43	22	19	14	1.88
69366--69504	20	7.5	20	80	14	156	20	18	20	40	1.92
71353--71438	20	4.4	20	80	2	77	45	23	16	15	1.85
71453--71499	20	2.3	20	88	0	67	21	19	23	36	1.95
72080--72148	20	3.5	20	91	0	120	20	20	23	36	1.95

Tables:   1

The End!