genome.fa.s176.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000176.1 Hibiscus syriacus cultivar Beakdansim tig00000308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117385

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2182--2216	18	1.9	18	94	0	61	54	25	2	17	1.57
2385--2569	20	9.9	19	70	17	93	34	20	18	26	1.96
2416--2510	34	2.8	34	91	0	145	38	22	17	21	1.93
2447--2569	40	3.2	40	85	6	141	34	21	20	24	1.97
2447--2618	94	1.8	93	86	1	245	34	20	19	24	1.96
2612--2665	20	2.7	21	78	16	62	12	18	25	42	1.86
4205--4291	21	4.1	21	69	0	66	22	18	35	22	1.95
4770--4835	20	3.5	19	89	6	98	36	27	19	16	1.93
4878--4925	20	2.4	20	92	0	78	18	20	27	33	1.96
5073--5122	18	2.8	18	96	0	91	44	6	18	32	1.74
6770--6837	20	3.5	20	85	2	93	50	23	14	11	1.76
7424--7557	20	6.7	20	91	0	196	24	20	26	28	1.99
20747--20810	24	2.9	22	80	13	78	32	20	18	28	1.96
20746--20816	21	3.2	22	73	22	69	33	19	19	26	1.96
23486--23621	65	2.1	64	81	6	159	33	22	14	29	1.94
27537--27597	20	3.0	21	81	11	81	9	24	37	27	1.87
37085--37124	19	2.0	20	90	4	64	85	5	10	0	0.75
37853--38307	110	4.2	110	89	3	663	34	23	17	24	1.96
39110--39178	2	35.0	2	97	2	131	50	0	0	49	1.00
40228--40302	20	3.5	20	76	16	71	21	2	1	74	1.01
40227--40305	28	2.9	28	78	10	76	24	2	1	72	1.05
40232--40305	26	2.7	27	78	13	73	22	2	1	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40414--40456	22	1.9	23	85	4	61	25	0	4	69	1.07
42910--42982	31	2.4	31	88	0	119	32	15	27	24	1.95
43325--43613	77	3.8	76	79	3	303	37	9	17	35	1.82
43314--43613	154	1.9	154	83	4	381	37	9	17	35	1.83
43853--44207	101	3.6	98	76	8	317	37	9	14	38	1.79
44777--44945	43	4.0	43	84	4	227	21	18	18	40	1.91
44785--44945	84	1.9	86	89	2	254	22	19	17	40	1.91
44878--44970	43	2.2	41	82	3	105	29	20	16	34	1.94
44792--44970	84	2.1	86	84	2	227	24	18	17	38	1.93
46312--46353	21	2.0	21	100	0	84	19	28	33	19	1.96
47696--47747	22	2.4	22	100	0	104	38	0	3	57	1.17
47708--47772	11	6.1	11	75	5	62	47	1	1	49	1.20
48181--48719	41	13.2	41	86	1	681	34	19	18	26	1.95
48181--48719	82	6.6	82	89	4	766	34	19	18	26	1.95
49094--49125	2	16.0	2	100	0	64	50	0	0	50	1.00
50064--50108	21	2.1	21	91	0	72	35	17	4	42	1.70
68697--68854	21	7.8	20	72	7	86	38	25	17	18	1.92
68821--69090	20	13.5	20	84	4	262	37	25	17	20	1.94
68860--69090	40	5.8	40	88	6	290	35	25	17	22	1.95
69765--69811	24	2.0	24	87	8	69	25	14	21	38	1.92
72159--72442	19	16.7	18	76	20	251	44	18	22	14	1.86
72159--72405	120	2.1	119	85	9	335	45	18	21	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72432--72548	53	2.2	53	95	1	209	14	24	17	43	1.86
72451--72548	19	5.4	19	82	13	134	15	22	16	45	1.84
72647--72682	13	2.6	14	82	8	56	44	22	0	33	1.53
73101--73371	137	2.0	137	97	2	510	21	26	20	30	1.98
74770--74826	14	3.7	14	77	20	60	45	22	21	10	1.82
74751--74843	33	2.8	33	95	0	168	47	21	20	10	1.80
74715--74848	19	7.6	19	76	17	128	46	23	19	10	1.81
74844--74972	19	7.3	19	75	17	125	8	17	28	45	1.77
74844--74935	33	2.8	33	93	3	150	7	18	28	45	1.76
75020--75486	93	5.1	93	97	1	879	46	19	12	21	1.83
75020--75486	185	2.5	186	97	1	879	46	19	12	21	1.83
77233--77313	33	2.5	33	91	0	135	8	20	22	48	1.77
77249--77305	14	3.7	14	70	20	51	8	22	22	45	1.80
77289--77366	41	1.9	41	97	0	147	12	25	16	44	1.83
77290--77365	21	3.7	21	83	3	109	11	25	17	46	1.82
77445--77515	33	2.2	33	92	0	115	47	18	22	11	1.80
77900--78012	20	5.7	20	81	4	120	18	18	28	34	1.95
81461--81582	31	3.9	31	88	2	165	40	22	15	22	1.91
81461--81582	62	2.0	62	88	3	183	40	22	15	22	1.91
83704--83760	29	2.0	29	82	6	71	17	21	19	42	1.90
84734--84769	17	2.0	18	89	10	56	77	0	0	22	0.76
84808--84867	29	2.1	29	84	6	77	18	20	16	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85935--85979	18	2.5	18	88	0	63	68	2	6	22	1.24
87077--87117	18	2.3	18	86	0	55	41	4	2	51	1.36
87861--87935	31	2.4	31	84	0	87	45	20	6	28	1.76
88041--88090	24	2.1	24	96	0	91	40	22	20	18	1.92
91279--91320	3	14.3	3	82	5	50	64	0	2	33	1.07
91270--91314	20	2.2	20	84	0	54	62	0	4	33	1.15
91280--91327	20	2.4	20	85	0	60	60	2	2	35	1.20
91802--91827	2	13.0	2	100	0	52	50	0	0	50	1.00
98371--98529	55	2.8	56	66	17	137	28	23	3	44	1.71
98410--98493	25	3.2	25	63	21	62	26	23	4	45	1.73
109498--109533	18	1.9	19	88	5	56	36	0	2	61	1.11
109476--109553	33	2.4	31	85	6	93	38	0	1	60	1.05
111323--111412	21	4.3	21	88	5	119	20	30	27	22	1.98
111622--111648	9	3.0	9	100	0	54	11	55	11	22	1.66
111939--112033	28	3.2	28	88	8	118	52	4	4	38	1.40
111968--112040	34	2.1	34	89	0	110	54	4	4	36	1.38
112434--113047	125	4.7	127	89	7	968	31	22	25	20	1.98
112751--112782	15	2.1	15	100	0	64	12	43	43	0	1.42
112624--112909	142	2.0	142	96	0	527	30	23	27	19	1.98
112499--113042	267	2.0	268	95	2	970	31	22	26	19	1.98
113129--113169	8	5.2	8	82	5	57	36	29	0	34	1.58
116132--116172	13	3.3	13	80	10	50	43	0	0	56	0.99

Tables:   1

The End!