genome.fa.s1760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001760.1 Hibiscus syriacus cultivar Beakdansim tig00003556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79473

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4576--4634	3	19.3	3	77	16	59	32	6	0	61	1.22
4576--4634	13	4.8	12	74	17	59	32	6	0	61	1.22
4576--4635	16	3.9	16	71	20	56	31	8	0	60	1.27
4576--4634	10	6.4	9	75	16	59	32	6	0	61	1.22
11963--12144	36	5.2	36	64	21	89	30	16	13	39	1.87
12299--12464	66	2.5	66	93	0	278	28	18	13	39	1.89
12208--12632	169	2.5	168	88	3	534	31	17	13	37	1.88
12365--12567	103	2.0	103	93	0	343	31	17	12	38	1.87
12468--12798	66	5.0	66	90	0	502	29	17	13	38	1.88
12468--12786	131	2.4	131	90	1	494	29	17	14	39	1.89
12316--12601	36	8.4	36	68	20	152	29	18	13	39	1.89
12467--12838	131	2.8	124	78	12	370	29	18	13	39	1.88
13080--13124	23	2.0	23	90	0	72	33	4	0	62	1.15
13829--13877	24	2.0	24	96	0	89	26	22	22	28	1.99
18548--18600	27	2.0	27	100	0	106	41	26	13	18	1.87
20245--20630	8	48.2	8	96	0	610	45	24	4	25	1.72
29779--30015	74	3.1	74	80	8	271	31	18	11	38	1.87
29789--29987	38	5.2	37	69	11	134	32	18	12	37	1.88
29789--29993	36	5.4	38	68	15	145	31	18	12	38	1.88
30022--30703	139	5.0	140	77	8	643	36	17	19	26	1.93
31287--31354	22	3.0	22	97	2	127	26	27	26	19	1.99
31564--31632	29	2.3	30	87	5	104	31	23	4	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31991--32140	65	2.2	67	86	6	198	18	28	26	27	1.98
31991--32140	66	2.2	65	85	8	178	18	28	26	27	1.98
38194--38261	22	3.0	22	97	2	127	26	27	26	19	1.99
38475--38533	30	2.0	30	93	0	100	32	23	3	40	1.71
38897--39048	68	2.2	68	89	3	227	17	27	27	26	1.98
38897--39070	68	2.6	67	86	6	210	17	27	27	27	1.98
39784--40800	124	7.7	138	82	6	685	37	17	19	26	1.93
39784--40304	139	3.7	139	86	1	677	37	17	19	26	1.94
39784--40304	279	1.9	279	86	2	751	37	17	19	26	1.94
40216--40968	124	6.1	124	87	0	995	38	16	18	26	1.92
40835--41168	162	2.1	162	83	2	420	37	14	18	29	1.90
49733--49801	34	2.0	34	85	0	93	28	14	4	52	1.61
50501--50592	46	2.0	46	93	4	159	32	26	10	30	1.90
57214--57388	93	1.9	93	86	0	251	28	22	16	33	1.95
57534--57634	45	2.3	45	80	1	105	16	28	28	25	1.97
66440--66498	23	2.6	23	88	0	91	18	27	27	27	1.98

Tables:   1

The End!