genome.fa.s1761.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001761.1 Hibiscus syriacus cultivar Beakdansim tig00003558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73856

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4404--4494	30	2.9	31	84	9	114	26	40	1	31	1.63
9922--10002	15	5.4	16	72	25	79	20	9	0	69	1.17
9922--10002	29	2.7	30	98	1	155	20	9	0	69	1.17
9946--9992	14	3.3	14	73	26	53	19	8	0	72	1.10
17274--17310	19	1.9	19	88	0	56	32	27	16	24	1.96
17668--17776	19	5.4	19	80	13	110	31	28	5	34	1.80
17778--17838	21	3.0	21	82	2	70	22	18	26	32	1.97
19982--20109	64	2.0	64	96	0	238	25	35	12	25	1.91
20768--20800	16	2.1	16	94	0	57	63	0	30	6	1.18
23985--24025	20	2.0	20	95	0	73	31	21	19	26	1.97
26572--26622	23	2.1	25	89	7	79	3	15	11	68	1.34
27106--27132	12	2.2	12	100	0	54	59	7	0	33	1.25
28514--28548	18	1.9	18	100	0	70	45	14	11	28	1.79
30988--31072	2	42.5	2	100	0	170	49	0	0	50	1.00
32765--32830	29	2.3	30	81	5	82	25	9	27	37	1.86
33442--33511	21	3.5	21	82	11	101	22	11	31	34	1.90
33454--33511	18	3.1	18	81	13	80	22	12	31	34	1.91
35702--35778	31	2.5	31	78	2	82	27	29	27	15	1.96
36668--36860	29	6.7	29	90	0	269	49	15	2	33	1.56
36859--36906	18	2.8	17	93	6	87	10	22	50	16	1.76
43164--43240	31	2.5	31	78	2	82	28	31	25	14	1.95
44143--44421	29	9.7	29	83	6	318	49	13	2	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44138--44422	57	5.0	56	85	7	317	48	13	2	35	1.56
44143--44422	56	4.9	57	85	7	345	48	13	2	34	1.56
44143--44423	85	3.3	84	85	5	321	49	13	2	34	1.56
44424--44469	18	2.6	18	86	3	67	15	21	43	19	1.87
47251--47379	49	2.5	51	88	3	190	44	18	13	23	1.84
52779--52803	2	12.5	2	100	0	50	48	0	0	52	1.00
54958--55060	44	2.3	44	100	0	206	42	0	1	55	1.11
54958--55075	22	5.4	22	80	12	136	45	0	1	52	1.10
55068--55093	11	2.4	11	100	0	52	65	0	7	26	1.20
59634--59701	32	2.1	32	86	0	91	23	7	33	35	1.83
66265--66309	23	2.0	23	82	8	56	42	2	8	46	1.47
69634--69768	29	4.5	29	76	7	126	23	34	25	16	1.95
70404--70447	21	2.1	21	91	0	70	29	0	15	54	1.42
73670--73856	60	3.2	59	89	8	296	41	0	13	44	1.47
73831--73856	10	2.6	10	100	0	52	42	0	19	38	1.51

Tables:   1

The End!